Array 1 57808-55079 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVJ01000005.1 Ligilactobacillus salivarius strain FJLHD27M4 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 57807 36 100.0 30 .................................... AGTGTTTTTTGTAAATTATGCAAAATATTT 57741 36 100.0 30 .................................... GTTAAACCATGATATTAGATTTGTAAGCAA 57675 36 100.0 30 .................................... TTCTAAGTTGTTACCAGTAACAATTGCAAA 57609 36 100.0 30 .................................... CATTTCAGTTACATCATTAGCTGTTGCGTA 57543 36 100.0 30 .................................... ACAATTGAAGATTTCTCTACTTAGAGTATT 57477 36 100.0 30 .................................... GTTAAACCATGATATTAGATTTGTAAGCAA 57411 36 100.0 30 .................................... TTCTAAGTTGTTACCAGTAACAATTGCAAA 57345 36 100.0 30 .................................... CATTTCAGTTACATCATTAGCTGTTGCGTA 57279 36 100.0 30 .................................... ACAATTGAAGATTTCTCTACTTAGAGTACT 57213 36 100.0 31 .................................... TAAATGGGCAATTAACCCAAATGTTTCCTAA 57146 36 100.0 30 .................................... CGTTCAAAATGCTATTGATGCAGCTATCAA 57080 36 100.0 30 .................................... GACGAGCACACGTTTAACGTACCTGGCCAC 57014 36 100.0 30 .................................... TTATGCTTGATGCTTACAACACTATATTTT 56948 36 100.0 30 .................................... ACCTTAACTCGTTCTAAATCTTGTGCTTGT 56882 36 100.0 30 .................................... ATTCTCGTTGCTGTTTCCAACACTACCTCC 56816 36 100.0 30 .................................... ACTGGCAAATAGTCGTCCGTATCTCCTACA 56750 36 100.0 30 .................................... AGAGTGTATCTAAGAAAGAACACGATAGAC 56684 36 100.0 30 .................................... TCTTTAAATCGCCTTTATACAATGTTGATG 56618 36 100.0 30 .................................... TGTTGATAGTCAAAAGTTAAAGAATCCTAG 56552 36 100.0 30 .................................... CTATGGATTGTCCTACATGTTAGCTTATCA 56486 36 100.0 30 .................................... AACAGTCAAGGCAAATGTGTCTAGTATGGC 56420 36 100.0 30 .................................... GTGCGATACGTTCAGTAACATATCTGTGGT 56354 36 100.0 30 .................................... CGTTCAAAACGCAATAGATGCAGCTATTAA 56288 36 100.0 30 .................................... ATTATTTCCAGTTACTCTTTCTTTAAACAC 56222 36 100.0 30 .................................... GGCTCAAAAAGTTATCTGGGGTGCGTTCTT 56156 36 100.0 30 .................................... TAGCCGGGCAGTATAAACAAGCATTTTTCC 56090 36 100.0 30 .................................... GTAAGTCTAATAACGAACTAAACGCAACTT 56024 36 100.0 30 .................................... CAATCATAGATTTTATAAAAACATTGTTAA 55958 36 100.0 30 .................................... ATATTTTTACTTGAGTTGCGAAGGGTTGCA 55892 36 100.0 30 .................................... CCTACTTCTTTTTTATTAATCGCATTATTG 55826 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 55760 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 55694 36 100.0 30 .................................... CGATAAGATTGCAGAAATTACTAACTTGAT 55628 36 100.0 30 .................................... GAACCATTTACTTCATACGTGATGTTGGCG 55562 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 55496 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 55430 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 55364 36 86.1 29 ..........T.........T...A......G.C.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC T [55330] 55298 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 55180 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 55114 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 41 36 98.6 31 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : TAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTTAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAACT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //