Array 1 39837-38222 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSSA01000021.1 Escherichia coli strain Broiler parent113 NODE_15_length_119577_cov_3.528444, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39836 29 100.0 32 ............................. ATATCTCCCGCTAAATCAGAGACATAAATACT 39775 29 100.0 32 ............................. GATTACCCGGCATTCCTGGCGGCGTATCGGCA 39714 29 100.0 32 ............................. CACCGTTCCTCACCTCCGGTAAACGAGGTTGT 39653 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 39592 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39531 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 39470 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 39409 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 39348 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 39287 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 39226 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 39165 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 39104 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 39043 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 38982 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 38921 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 38860 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 38799 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 38738 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38677 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38616 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38555 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38494 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38433 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38372 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38311 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38250 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66175-65536 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSSA01000021.1 Escherichia coli strain Broiler parent113 NODE_15_length_119577_cov_3.528444, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66174 29 100.0 32 ............................. TTTTCGGAGACAAAGCGCGCCTCAGCAAATCA 66113 29 100.0 32 ............................. GCCAAGAACGTGAAGAAATCGAGCGTGAGGGG 66052 29 100.0 32 ............................. AAATAGCGTTTGTTGTTGGAATAATGGGTTAT 65991 29 100.0 32 ............................. ATTTTTCAAAACAGATCGCTACTGCTCGTGCA 65930 29 100.0 32 ............................. GAACTCAGGCTTCAGGGCATCAGCACAATGGA 65869 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 65808 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 65747 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 65686 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 65625 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65564 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //