Array 1 31267-30462 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNC01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 197 NODE_30_length_54886_cov_1.6075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31266 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 31205 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 31144 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 31083 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 31022 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30960 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30857 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30796 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30735 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30674 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30613 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30552 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30491 29 96.6 0 A............................ | A [30464] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49563-47399 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNC01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 197 NODE_30_length_54886_cov_1.6075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49562 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 49501 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 49440 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 49379 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 49318 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 49257 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 49196 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 49135 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 49074 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 49013 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 48952 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 48891 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 48830 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 48769 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 48708 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 48647 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 48586 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 48525 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 48464 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48403 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48342 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48281 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 48220 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 48159 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 48098 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 48037 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 47976 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 47914 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 47853 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 47792 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 47731 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 47670 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 47609 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 47548 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 47487 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 47426 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //