Array 1 27-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHSX01000032.1 Bifidobacterium longum subsp. longum strain MCC10106 contig0032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 27 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 91 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 156 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 220 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 284 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 349 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 413 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 477 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 541 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 605 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 669 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 11 36 98.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : CTCGCCGCCGCACGAGAACGAGTCAAC # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2667-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHSX01000033.1 Bifidobacterium longum subsp. longum strain MCC10106 contig0033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2666 36 100.0 28 .................................... TCTACCGACGTGATAGGCAACTACACGA 2602 36 100.0 28 .................................... AGGAGAGCTGTGTTTTTTGTTTCATGTT 2538 36 100.0 28 .................................... AATTATTAGGAATTCCGCCCAAAAAAAT 2474 36 100.0 29 .................................... ACCTCACCGGAGTATCTGGATTACGTTAA 2409 36 100.0 28 .................................... CGGTCACGACGTCGATTTTCGATAACCT 2345 36 100.0 28 .................................... GCCAGCGGTCGTGCTCATCGACCACGTC 2281 36 100.0 28 .................................... TGCCGACGACAACGAAGTCGGCCTGCGT 2217 36 100.0 28 .................................... TACCCATACCGACTATTATGAGGCTTAC 2153 36 100.0 28 .................................... TATCACCTGTTGACTGAACTGGCACTGA 2089 36 100.0 28 .................................... ATAATTTTCGTCGTACTTGCGTAGGAAC 2025 36 100.0 28 .................................... GGGCAAGACCGCGTATGTGCGCGACCAC 1961 36 100.0 28 .................................... CGCCGAACAATCTTATTCAGCACTGATT 1897 36 100.0 28 .................................... AGTGTTACGGGACATTAACGGGTCGCGT 1833 36 100.0 29 .................................... ATGTATGAGTTGGGTGGGATGGTTGGGTC 1768 36 100.0 28 .................................... AACGTTCGCAAGCTCTTGCAGTGCACTT 1704 36 100.0 28 .................................... GGGCGGCGTGGCCATGGGTGAAGCCATG 1640 36 100.0 28 .................................... ATGGCGTGCCTGACAAGTGGAGCGAAGG 1576 36 100.0 28 .................................... AGATTCACACGCGACGGGATCCCCGAAC 1512 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 1448 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 1384 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 1320 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 1256 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 1192 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 1128 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 1064 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 1000 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 936 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 872 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 808 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 744 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 680 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 616 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 552 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 488 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 423 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 359 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 295 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 231 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 166 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 101 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 42 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //