Array 1 1652-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAHK010000028.1 Moraxella osloensis strain 200931 NODE_28_length_1651_cov_109.490814, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1651 28 100.0 32 ............................ TTGAGTTAACAATTCTGTGGGGTCAATTAAAC 1591 28 100.0 32 ............................ TTGAGTTAACAATTCTGTGGGGTCAATTAAAC 1531 28 100.0 32 ............................ AAAACTTACAGAAGAAATGATTTTAGACAATG 1471 28 100.0 32 ............................ TTTTTTTACGGTGCAACTCACAATGGTGCTAC 1411 28 100.0 32 ............................ TTTTACCGTTTCCACATTAAACACAATGGGTC 1351 28 100.0 32 ............................ TATTGGATAATGCCAAGTCGGTATTAAATACT 1291 28 100.0 32 ............................ TTCAGGTGTCATGAATGCGCCAGCTTGGGTGT 1231 28 100.0 33 ............................ CGCAATAATTCAGCCTTTTGCGTAGGACTATAT 1170 28 100.0 32 ............................ TACGGTGAAAACGGTTGGCATCCGCATTACCA 1110 28 100.0 32 ............................ ATTTACACCAATATTGCTAATTTGAAAATTGA 1050 28 100.0 32 ............................ TTGAGTTAACAATTCTGTGGGGTCAATTAAAC 990 28 100.0 32 ............................ AAAACTTACAGAAGAAATGATTTTAGACAATG 930 28 100.0 32 ............................ TTTTTTTACGGTGCAACTCACAATGGTGCTAC 870 28 100.0 32 ............................ TTTTACCGTTTCCACATTAAACACAATGGGTC 810 28 100.0 32 ............................ TATTGGATAATGCCAAGTCGGTATTAAATACT 750 28 100.0 32 ............................ TTCAGGTGTCATGAATGCGCCAGCTTGGGTGT 690 28 100.0 33 ............................ CGCAATAATTCAGCCTTTTGCGTAGGACTATAT 629 28 100.0 32 ............................ TACGGTGAAAACGGTTGGCATCCGCATTACCA 569 28 100.0 32 ............................ ATTTACACCAATATTGCTAATTTGAAAATTGA 509 28 100.0 32 ............................ ATTGTATTTGGATAAGGGCGACATGAACCAAA 449 28 100.0 32 ............................ GTGTTATTTTCAGGGTCAAGCACCCAGTCAAC 389 28 100.0 33 ............................ CTACCCCTGCCACAATAAACGCCCCTGAGACAT 328 28 100.0 32 ............................ TATAAAATTAACAAACAAATGTTTATATTATA 268 28 100.0 32 ............................ TATCATGCGTGAGCTACTTGCTTGTCTGTCAA 208 28 100.0 32 ............................ ACTTGCACCCAGATTAAAGGTGGCTTCCATTG 148 28 100.0 32 ............................ ATTCACTATGCTCCTTAACAATATTGATGGCA 88 28 100.0 32 ............................ TTGATGGACACCAATAACCGCCTTGACTTGAT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 CTTCACCGCCACATAGGCGGCTTAGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16180-17708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAHK010000020.1 Moraxella osloensis strain 200931 NODE_20_length_18675_cov_64.217651, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16180 28 100.0 32 ............................ AAAAATCGGCTGTTTGTTTATGCGTTAACGCT 16240 28 100.0 32 ............................ GTTCTATTACCCAATGTCATCACGATATACTT 16300 28 100.0 32 ............................ TTGAATGGCTAAATCTTGGATGCGCATGGCTT 16360 28 100.0 32 ............................ TATCTTTGTCGGTGCTGGTGCTTTGTCTAGTA 16420 28 100.0 32 ............................ ATAAAAAAAGCTGGGACTTCAAAGGGGGAAAA 16480 28 100.0 32 ............................ CAAAAAGGCATTGAGATGCTGTGTGCCTTTGA 16540 28 100.0 32 ............................ ACATCCAGCGCCTTTGCTTTCTCGGTATCGTT 16600 28 100.0 32 ............................ TAAAGTAAAAAACATAAATCAAGCCATTGTAC 16660 28 100.0 32 ............................ AAAAGCGATAACATTACCAGGTATATTTTTCA 16720 28 100.0 32 ............................ TCACGCTTAACCGCCTTTATGATGAAATCTTT 16780 28 100.0 32 ............................ TATTATTTTTAGCGCGGATATGGTCAAAACTA 16840 28 100.0 33 ............................ AGTGTATCCGCCTGTGCTAAAGCCTTTACCCAT 16901 28 100.0 32 ............................ TTTTTAACATCGGGGAATTTTCCATCAATCGG 16961 28 100.0 32 ............................ AAGCAGTCATCAAAGAACACGAGCAAGGCGCA 17021 28 100.0 32 ............................ GATATCCGTATCGAAACGCTAAAGGCACAGAA 17081 28 100.0 32 ............................ AGAACTATTTGAAAAGTTAAGGGATGAAGAAG 17141 28 100.0 32 ............................ AAAACAAATAAGGCATTAGGGTGCAAAGATGA 17201 28 100.0 32 ............................ AATACCTTCTACCGCTTCAACAGTGCGGCTCA 17261 28 100.0 32 ............................ TAACAGGTGCAGCGACAGCCGCTACTACGTTT 17321 28 100.0 32 ............................ ATGTTTAAATCGCTATGGCCTGTGGTTGATTT 17381 28 100.0 32 ............................ TTAGCTATCATGTAATTTTCAGTTGTGTAAAT 17441 28 100.0 32 ............................ AAAAATGCAGCGCGTGGTTGATGAAATGGAAA 17501 28 100.0 32 ............................ TGTAAACTTGACATCAACATTACGTTCTGCGC 17561 28 100.0 32 ............................ AGTGCGGATAGCACCAGTGACCAAAATAACAT 17621 28 100.0 32 ............................ TTGAATGTTTAGCAATCTCTAAACCAGCTAAA 17681 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 CTTCACCGCCACATAGGCGGCTTAGAAA # Left flank : CGTTTGATAGATTATGTACATATCAAACGTATCCAGCCTGTACCCGAAGTGCATGGGCATGTGGTGGTGAGACGTTACCGCTACAAAAATTTTGACAAAAAAGTGGCGGAGTTTGCCAACTTTAAGGGCATCAGTGACCAAGAAGCGTTGGCGCATTGTCTTGCCCATAAGCGTGCTATCAAACACTACCCTTTTATCACCCTAAAAAGTCAAACCACCCAAAATGACTATAAACTGTCAATTTGGCAAGAATTGACGAAGGATGAAAAAAGTGGCAGCTTGAATACCTATGGGATGAATAATCAATTAGATGCGGTAACCGTTCCCCACTGGTAATCAACCTTGCCGACAAACTATAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATTAGTTATATCCAGGCAAAAAATGTAGGGTAAAAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCT # Right flank : ATTCTTTTGTTGGCTGTGGTCTAAAAAGTATGTTCACTAGACCCAGCCATAATTGACATAGTGAAACAGTAAATCAAAAGCCTTAAAATGATTAATGAGCTTCTTGGAAAAACAGCAAGTTTTTCTAAAAGCTCGCCTCATTCTGTGCCTAAAAAGATTATTATTACCTTCAATATCGACCGTATAGTATTTGCCAACATTTTTAAAATCAAAGTCAAAAGCGGTGAGAAAACTATCCCAGTTATCACAGCAAACATAGCCAAAATCAACACTCAGCTCTTCAAGCTTTGCTCTAAGCTGTTTTGCTGTTGTTAAATTACGCTTACCCCATACAAAGGTAACAATTTCATTGGTATCTGGGTCGTAAGCATAAACCAGCCACACTTTGTTTCTCTTGCAACCCACATACGTCCAAAACTCATCGACTTGCAATCGACGATAATAGCGCCTCTTTGGTTTTATCTGATAGTCAGATTGTACTAGAACACTTAGAACCTTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 188-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAHK010000043.1 Moraxella osloensis strain 200931 NODE_43_length_226_cov_42.252525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 187 29 100.0 31 ............................. TGATGGACACCAATAACCGCCTTGACTTGAT 127 29 100.0 31 ............................. TGAGTTAACAATTCTGTGGGGTCAATTAAAC 67 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 3 29 100.0 32 CTTCACCGCCACATAGGCGGCTTAGAAAT # Left flank : TTAGAAAATTCACTATGCTCCTTAACAATATTGATGGC # Right flank : TTGAGTTAACAATTCTGTGGGGTCAATTAAACCTTCACC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 118621-112469 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAHK010000008.1 Moraxella osloensis strain 200931 NODE_8_length_118659_cov_53.958610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 118620 28 100.0 32 ............................ TTGATGGACACCAATAACCGCCTTGACTTGAT 118560 28 100.0 32 ............................ AACAAGCATATAACGATACTAAAATAGCAGTT 118500 28 100.0 32 ............................ TAAACCTTAGAGACTTAGGGATTGACAGCGTA 118440 28 100.0 32 ............................ TATCGAGCCTAGTAGTGACTATGATGTGTATG 118380 28 100.0 32 ............................ TTATTCTTGGTTACCGAAAAACGCCTAACCTG 118320 28 100.0 32 ............................ TTATTATTTCATGTAGGATGACTGACGGCTTT 118260 28 100.0 33 ............................ TTACACAACTACAGTTTTACGAATCTATTTTAT 118199 28 100.0 32 ............................ ATATCCCCTTTATGCTTCGATAACAAGGTTTT 118139 28 100.0 32 ............................ AACGACGGCACAATCAAACGATCTAAACAAAA 118079 28 100.0 32 ............................ AACATGGCGATGGCGCTACTATCGCAATACAG 118019 28 100.0 32 ............................ TTGGCGATTGCAAGCTACTACCTAGTACAGGC 117959 28 100.0 32 ............................ AATTCAGCTATAAGCAAACTTTAGGCGAAAAT 117899 28 100.0 32 ............................ TCACTTCTTTGGCGTGTCGCTCGGCAAACTCT 117839 28 100.0 32 ............................ AAATTAGCGGCGCATGGTCAAATGCGTAACCA 117779 28 100.0 32 ............................ TGCAACAATAGAGGCATGTACCGTAGCGATTT 117719 28 100.0 32 ............................ ACAATATGACTGGGTAATGGTACCCGGCGGCT 117659 28 100.0 32 ............................ AAAAGTTAAACTTACTAAAACACTCATTGATA 117599 28 100.0 32 ............................ TTGCCACCAATCCTAATTTAGAAATCGGTGAC 117539 28 100.0 32 ............................ TAAATTTGACAATGAATTTAATGCACTTCTTA 117479 28 100.0 32 ............................ ATACCGATGTGATGCTAAACATCAAAGCTACC 117419 28 100.0 32 ............................ TGTCAGAACTACCTAGTAATGCAGAATGGTTG 117359 28 100.0 32 ............................ GACACAGAAGGCAAATTTGCCTTAACTAACAA 117299 28 100.0 32 ............................ AACTGGGTATCATGGGGCATACGGATGGTATG 117239 28 100.0 32 ............................ AAAGTAAGCATCGCACCGCCAGCAGTATCGAC 117179 28 100.0 32 ............................ GTCAGTTGTAACAACTGCGTCAGTTGCCAACA 117119 28 100.0 32 ............................ TAAAACGGTAAAGCTGTCCGAATGGGAACAGA 117059 28 100.0 32 ............................ ATAGCGTAGGGAATAAATCGTCATTCGACTGC 116999 28 100.0 32 ............................ TATTAATCATGTCTGATAGTGAATGTCAACAT 116939 28 100.0 32 ............................ TTTTTAAAAAATTGTTTAATCATTATTAGCCA 116879 28 100.0 32 ............................ TAGATATTGTTATTAACAATAAGCATGATTTA 116819 28 100.0 32 ............................ TAAGCGTTTGTATGCCTGTCTAACTATTGGCT 116759 28 100.0 32 ............................ AATTACTTGCTCGCTTAAAAAGTGAGTTTCAA 116699 28 100.0 32 ............................ ATGAAAAATGGCGCGTCTGCGTCTGTTGCTGT 116639 28 100.0 32 ............................ GCTTTGTCTAGTTCCCCCAGTAGCGGACTGAA 116579 28 100.0 32 ............................ AAACAAGGCAGGATAAGCAACGCCCAACTGAT 116519 28 100.0 32 ............................ TTTAAAAAACCATCTTGTTTGATACGTTTATA 116459 28 100.0 32 ............................ ACTCCAATGCGTACCAGTGCCGCAATTATGGG 116399 28 100.0 32 ............................ TTTAGAGTTGCAGTTGCTTGATAGTGCAATGC 116339 28 100.0 32 ............................ TGTTGCCCTTGGCTCTCTTTGCTTATGCTGGT 116279 28 100.0 32 ............................ TGTTCCAATAGTCACCCCAGTCCTACGACAAA 116219 28 100.0 32 ............................ AGAGATACAAATCTTGATAATCTTTAGATACT 116159 28 100.0 32 ............................ TTTATCTAGTCCTAGTATGTCCGCCAGTGCTA 116099 28 100.0 32 ............................ AACATGGGCAAAATCATGCTTGGCGAAACATC 116039 28 100.0 32 ............................ ATATTTATAAGTGTCAACGCGAAGTTGGCGAA 115979 28 100.0 32 ............................ ACCGAGCATTAAATTTGGGGAAACTGAGTAAA 115919 28 100.0 32 ............................ ATCACACACCCCCAGCACTTGCTATAGTTTGA 115859 28 100.0 32 ............................ TGTACTTGCTTACTAGCATCATAAGTTGTTGG 115799 28 100.0 32 ............................ ATTCGTGTTGAAGGTGGTGTCCCTACTGATTG 115739 28 100.0 32 ............................ GTCTTTTTATTCTTACTCAAACTATTTCTAAT 115679 28 100.0 32 ............................ ACTTGTTAAGGATGAAAAGGATTCTAGTTTTG 115619 28 100.0 32 ............................ GAAAAAATGTTATGACTATTACGACTCTGCAC 115559 28 100.0 32 ............................ TTTATCATATTCACGAGCAAACCAAGATAAAG 115499 28 100.0 32 ............................ AAACGCTACGACAAAGACGATGCCAAACACGT 115439 28 100.0 32 ............................ AAAAATCTAAGGTTAAAAAATTATGGTTACTT 115379 28 100.0 32 ............................ ATTTGAGTAGGGCGTTCATTTCGTCGCGGGTG 115319 28 100.0 33 ............................ AATCAAATCACCTGGCATATACATACCCAAATC 115258 28 100.0 32 ............................ TTGTTTAAATCATAAACAAAATGCTGAACAAG 115198 28 100.0 32 ............................ AATCCTTACAATGACGGCAAAAAAACACATTG 115138 28 100.0 33 ............................ TGTTGATGGTCGCATTACTCGCCCCTTGAGATT 115077 28 100.0 32 ............................ TCAAGCTGGTACTGGTCCAGTTTATATGTCAC 115017 28 100.0 32 ............................ ATAAACAATCGCGGGTTGGTTACCTATCGTAA 114957 28 100.0 32 ............................ TAAAAACAGTTTGGCACTGGTAAACAAGGTTT 114897 28 100.0 32 ............................ CTAATGCTTTGGCAGTATCTCGAATATTGCTA 114837 28 100.0 32 ............................ AATCGCTGTGCTGCTTAACGATATCAATAGCC 114777 28 100.0 32 ............................ TGCTATGTTTGATTTTTATAAGTCGACAAGTC 114717 28 100.0 32 ............................ TGTTAATACAAGCGGCGCGACTTGCTCACCCG 114657 28 100.0 32 ............................ GCAACGCGTACCGTAATACGATACGGATATTT 114597 28 100.0 32 ............................ CTAGCTTTACAACTATAATCGGCTACTTTTTT 114537 28 100.0 32 ............................ AGTAAAGGAAGCACCAACAGCAGAAAGGCTAC 114477 28 100.0 32 ............................ CAATCTTGCAAGTGATATGACTGCCCAACAAT 114417 28 100.0 32 ............................ AATGCGCCCGTTGCTAAAGACCCTAGCAAAAT 114357 28 100.0 32 ............................ ATAGAATCACTAAGGATTCGGGCGTTAAAGTC 114297 28 100.0 33 ............................ AAACCGAGCCACAGCGCACCAAATTCCCATAAT 114236 28 100.0 32 ............................ GTCTGCAACGACACGCGCCAAGACGATGAGTC 114176 28 100.0 32 ............................ ATAAAGCGACTGGTTAGCTCGATGGGCAATCG 114116 28 92.9 32 A............G.............. TTTGATAAACTGATTACCCATGATGTACTGAA 114056 28 92.9 32 A............G.............. ATCATTGTTTATACAAGCAGCTTTAGCCAAAT 113996 28 100.0 32 ............................ ATTTTGGCGCCCGCATTTTCAGCGGCTTTTTC 113936 28 100.0 32 ............................ CCAATAAAAAGCAAAGTGATTCCCCCGCTACG 113876 28 100.0 32 ............................ GTATCTGTCATTGTTTGCCCCCTTTACTAATC 113816 28 100.0 32 ............................ CAGTCTGACCAATTTGATTTAAAGCCCAATTT 113756 28 100.0 32 ............................ GTAAGCCCTACGATACAGGGCAACCCACAGAT 113696 28 100.0 32 ............................ ATCAAAAACAGACAAGCACCGACGAACATCGT 113636 28 100.0 32 ............................ GTTTCAATCTTATCAAGCTTAGAGACCACAAA 113576 28 100.0 32 ............................ CCAAGCCCCCCGACCAACAAAAAGCGATTAGA 113516 28 100.0 32 ............................ TTGAGTAAGTAATTCAGTGGGGTCGATTAAAC 113456 28 100.0 32 ............................ TGTGAGCATCTTCAATACGCTGCAAGGCAAAG 113396 28 100.0 32 ............................ CCACTCATAGCTTGGGTAGTAAGTTAATCTTC 113336 28 100.0 32 ............................ AAGCTATACGAGCAGTTAAAGTCGGATTATCA 113276 28 100.0 32 ............................ ACTAAAGGCAAACGCTACCGCCGTTATAAACA 113216 28 100.0 32 ............................ CAAGTGAATCAGCCAGAGAATTTACAGCCAAG 113156 28 100.0 32 ............................ GATGTTGCGCTCGATACTGCAAAAGCTGAAGC 113096 28 100.0 32 ............................ ATCAATCACACAATTAAAACGCATAACAGCCA 113036 28 100.0 32 ............................ TTACGCCAACCGAGCGCTATATCTATCGTAGC 112976 28 96.4 32 ............G............... AAGTTCGTGCGCATATTTTGCGATACTGCCAA 112916 28 96.4 32 ............G............... TTTTTGGCTTGCAAATGCGCTTTGACTTGTCA 112856 28 96.4 32 ............G............... AGTGGTCAAACGGTAGTAGCAACATTGGTCGC 112796 28 96.4 32 .............C.............. ATTACCGTCATCGTTAAGCGTGTACCATGCGC 112736 28 96.4 32 .............C.............. ACTTGATAGGAGAGCATATGACTCAAGGTAAA 112676 28 96.4 32 .............C.............. ACTAATTGTACTTGTACGCCACTAGCGACAGG 112616 28 92.9 32 A............C.............. AATACTACCGCGAATCGTCGAGCAAATAGAGT 112556 28 96.4 32 ........................A... AAAGATTTTAAGGGCTCGGCTGACCAGTTTTG 112496 28 78.6 0 .......A.....C........G..TCT | ========== ====== ====== ====== ============================ ================================= ================== 103 28 99.3 32 CTTCACCGCCACATAGGCGGCTTAGAAA # Left flank : TTAGAAAATTCACTATGCTCCTTAACAATATTGATGGC # Right flank : TAATTAGTAAAACAGTGAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTGAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCATTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTCAATCCTCGAAAAACCACGTAAACCCCTGATATCACTGCAATAAAAAAGCCCCAATCAATCGACTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATATGCCTAAAAGGGTCTAACAATCTACTTGCGTAAGTAGGAGTGCCATTTTACCAAAAAATTTTGCTTTTGCAAGTGGTTTTAATTTTTCGCTTCAATTTTTATTGCGCCATCTTCAGCTAAGTTTTCGTTAAGGTTAGGTTGTTTTAATACACTTAGCCACTCGGATATACCTCAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //