Array 1 1730818-1731897 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021319.1 Clostridioides difficile strain DSM 101085 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1730818 29 100.0 36 ............................. TGATAGATAGAGATTTGAAACTAGATGATTTATCAG 1730883 29 100.0 36 ............................. TGACAGTAGGCTTAAAACTTGGGTCTGTCTTAGCTT 1730948 29 100.0 37 ............................. TTGTTATTTATTAAAATCAATTTACCTTCTTCTACAG 1731014 29 100.0 37 ............................. ATTACAAAAATGGCAAGGGAATTAAATTATGATAGAA 1731080 29 100.0 37 ............................. CACTATACTTACTTTGAATTATTTTCTCATTTGTATT 1731146 29 100.0 35 ............................. AGAAATTAATCTAAGCCTTTTTAATGGGGATACAT 1731210 29 100.0 36 ............................. ACTTGTATAGAAGATGTATTAATAGAAAGTTTAAAA 1731275 29 100.0 37 ............................. GTTTCTAATAATATTGCAAATAAAGTTTTAGATACTA 1731341 29 100.0 37 ............................. ACCTTTTTTGCTGCTCCTTTTATTATTCTTCCTGCTT 1731407 29 100.0 36 ............................. ATCATAGTTTATTAACACAGGAAACGAGGTTAGTTC 1731472 29 100.0 37 ............................. AACTCTTTTAAAAAAGAATATACGATTTTCAGAGAAG 1731538 29 100.0 37 ............................. TATTAATTGCTTATCTATTAATTCTTTTAATTTTTCA 1731604 29 100.0 37 ............................. TCTTTATATTGATATCCAAGAATAAGCGCACGTTCTT 1731670 29 100.0 38 ............................. TTGCTTAGCGCAATAACTTTTGAAAATACTACAGGAGT 1731737 29 100.0 38 ............................. GAAGTCAACAATTTGGCTATTGGTTAAGTACAACTAGC 1731804 29 100.0 36 ............................. AAAGAAAATTGGGTTTTTGATTAAGAACTTGCGAAT 1731869 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ACTATTATTATATAACTAACATCTAAGTGACATTTAAGAAAAATATGAGATTACTGATATTTTACTGATATAAAACTGAATGTTATTTAAAGAGAGCCTTGATTATATTTTTAGAAGCTTTTTATGCATATTATCTAAAATATGAGAATATCTATTCATAGTTATTTTTATATCAGTATGACCTAATTTTTTAGAGAGAATTTTTATATTAAATCCAGTTAGAAGAAGACTTATTAGAATATCCAATGTAGTAAGCACTAGCAGATATTCTTAAATTGATAAATTACTCCATTTTAATTTTATAGGTTAAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGCGTTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAAAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TCTGCAACAAGTATAGGTAAAATACTCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAGTAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAGAATAAAACTTAATGACAAGATACTAGATATAAAAATAATTACCTTATAAATAGATTGAAATTTGTGAATATTCATACTATAATTTAGATATAAGGAGATGCTCTTATAAACTTAAAGGGTTTGTACTACTTGTACTATCAGTATTGATAATATTAAAGTATATATACCATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATGTTAAACAACACAAATATCAAAATTTAATATTGATAGAGGTATAAACATTATAAAAATAATTGAAAATAAAAATTAAGAAATATTTAATCCAACTACAATATAAATTAGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2044667-2043580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021319.1 Clostridioides difficile strain DSM 101085 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2044666 29 100.0 38 ............................. TCATTTATGTATGCTCCAAACGAAGTCATACCTCTTAT 2044599 29 100.0 36 ............................. AAACAACTTAAAGATATAAATATTAAAAAAGGTGAT 2044534 29 100.0 37 ............................. AATGCAAAAGAAGCAATTTGTAAGTATTTAAAAGTAA 2044468 29 100.0 37 ............................. ACAGCATATATAGGCTTACCTTTAACAAGATATTGCA 2044402 29 100.0 37 ............................. TATGTAATTTTAAAGTTATGTTTGAAAGACTTCTTAA 2044336 29 100.0 36 ............................. ACAGTAATTTTAGCAACTTTAAAAGACATACAAGAG 2044271 29 100.0 38 ............................. ACAATTTCTTTATATTCACTTGCTGTTATCTTATTCTT 2044204 29 100.0 37 ............................. AAAGATAGTTTAAATGATAGATATGTTTTTTGGATAG 2044138 29 100.0 37 ............................. AACTGAATCTCTTCTCTATTTGCTGTAACTTTAGCTT 2044072 29 100.0 38 ............................. GGATTTTATAAATTAGAAGAGAAATATTCTACGCGCAT 2044005 29 100.0 37 ............................. GAGATAAGTTCTTCTTTTATTTCAATTACATTTAAAC 2043939 29 100.0 37 ............................. GAATGGCTAATGCTGTATTAGGCATTATAAGAAGTAT 2043873 29 100.0 37 ............................. TATAAACAATTAAGTTACTTTGAAAACTAAATACAGA 2043807 29 100.0 37 ............................. TTTTATAAATTTGCATTAAAAAGCACCTACTTTTTTT 2043741 29 100.0 37 ............................. ATACAGGAACAGGAGTCGGAACAGAAAAAAACGCCTC 2043675 29 96.6 37 A............................ GTTGTATTACCTCTGTAATTATTTTTTCCAAAATTAC 2043609 29 82.8 0 .C.............A......AT.T... | G [2043588] ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.8 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CTACAATTTATAGAGTGGAGTTCATACAAAAGATAATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTACAAGGTATATTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAGAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTGCAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAATAAAATAGGGCTTAAGCATTGAAATATAAGGCGTTGAAGATGTATGATAAGTGTTATCATTTGCACCACTGCTCGCTCACTGCAAATTTTAGAGTGTTGCATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : AAGTTACAATGAGTACAAGAATGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAAACGATTAATAATCTATAAAAATGGAAAAAACATCCAATATCCTACAAAAATAGATTTTTTTATTACAATTACAAGTTTTTATTGCATCTATTTAGCAAAAGTATTATTATGCAAGTAAGATAATTATCAAAGACAATTCTGAATAGTCTGATTTAAAAGATACAATTAAAGGATATAAATAGGAATAATTTATAAATATTACAGAAGATTTATAACTAAAATTACGAACGTAAGTTTGTTATATGGGGTAGTTGTGTGGATGAATCAAATAAATTAATATTAGAATTGAATAATATTTTCTGTGAATTAGAGAGTATTAATAAATATAAGTTTAATGAATATAAAGAAATTGTTAAAAACTTACACAACAAAAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2062732-2063020 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021319.1 Clostridioides difficile strain DSM 101085 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 2062732 27 100.0 39 ........................... ACTAATTGGATTATTAATAACATTATTAGGAACGGGAGC 2062798 27 100.0 39 ........................... ATAAGATGATAATAATTTTACAATAAATATCAATCTAGG 2062864 27 92.6 38 ............C.........A.... ACGATTAATGCATTTATAGCAATTATAGCGATACCAAT 2062929 27 85.2 38 ........A...CT........A.... TTTGTAACACAAGTTTGGAGCGCTACTTTAGCTACGCT 2062994 27 81.5 0 ........A...C..T......A...T | ========== ====== ====== ====== =========================== ======================================= ================== 5 27 91.9 39 ATTTACATTCCATATAGTTAATCTAAA # Left flank : AAACAATATTTTTCCTAATTTGTGGTATAATAAAAGCAAGAAGAACTACAATCTATTTAAGACTAGAGTGGAGTTCGTAAATTAGTGTTTCTTTTTGAACTTAATCTTTAGTTCAAAACTAAAGTCACTCTGGCCGGAGTGGCTTTTTGCTTTTTTGATACATATACAAATTATGTAACCGATTAGACTAGCTGTTAAACTAGCTAATACGCTAATCAAAAAGTTATCCATACATATACACCTCCCTTCTACACATTGGGAGGATAATCTTTTGTATGAACTCCACTCTATAAATTGTAGATTACATCTTCTTGCTACAACTATTATAGCACATAATTCTTACATATTTTACCAATTTATTACTTTTTACATTATAATCACATCCTTTCAATAAAAAAACACCTACCTAAGTAAGTGCTTTCTTTTTCTATTTAGTTTTTCTCCACATAGTTAATATAAAACTCTAACAGCAACAGCAAAAGTATTAAATGCTTACAAGA # Right flank : TTCTGTACTTATATTATATCATTTTTTAACATATAAAGCACTTGAAACGAAAGAATATTCAAGTGCTTTGTTTGTTTATACTTATTTACCTTCTATATGTTATAAATTCAGTAATTCTTTTTTCTTAGCATTAAATTCTTCTTCTGTAATTGCCTGCATGTCTAGCAATTCTTTTAATGTTTTTATTTGCTGCAATGGGTCAATAGTATTATTTCCCTCAACTACAGGTTTATTTATATCTTCACTTTTGTTATTATTTCTGTATTCAACTAATTTTTCATATATAGTTGCACAAGCATTTGCATTTTTCTTAAAAGACAGTATAAAATCTTTGCATTCTATTATTAAGTATTCTTCTGTTTTAACTTGCTTCTTTTTCATTGCAAGAGCGAATGGTCCAAACAAAGCTATCCTAGTGGCTGTATATCTTCTAATAACTTCTTCTTCTTTTTCAATGGAAACTGTTTTTATATCTGAATATAAGATTTCAAATACATCAA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCATATAGTTAATCTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 2139457-2138613 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021319.1 Clostridioides difficile strain DSM 101085 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 2139456 29 100.0 37 ............................. CAATATATCTTGGCAGGTGCAGATTTAGGAGCATTAC 2139390 29 100.0 37 ............................. TTTGATTGTGTTGCTACTCTTAATAGCTTTTACTACT 2139324 29 100.0 36 ............................. TTTTTTCAAGCATTTGTAAATGCGATTATTGTAGGT 2139259 29 100.0 37 ............................. ATTAGAGTTTAAAATAAAAAATGATAATGTTCTTAGT 2139193 29 100.0 36 ............................. TTGTAAATGGTGATATTGGATCTATAGTTGTAAATA 2139128 29 100.0 36 ............................. TACAGAAAGGAATATTTTAATTAATTAGGAGGATAA 2139063 29 100.0 37 ............................. ATAGGAAAATAGAGATAGGTTCACAATCTAATGATAG 2138997 29 100.0 38 ............................. ATTTTTTCTTTTAGTTTTTTAGGAACTGGTAATCCACA 2138930 29 100.0 36 ............................. TTCTGAATCATATGAAAACAAAATCTTATTTGTATT 2138865 29 96.6 35 ...........................G. GAAATTATTAATGTTATTTCTACTCTTGCAGTTGC 2138801 29 93.1 46 .......................A....G CATAGTCTATTGAACATTTATTAAGAGATAACTTTCGTTTTATATA 2138726 29 79.3 55 ...........G...TA.T.A..T..... GTTTCACTATTGGACAACGGAAGTTTTTTCAGTGAGTAAAGATTGAATCACTTTA 2138642 29 72.4 0 TA.....C....T..T...A...A...T. | A [2138620] ========== ====== ====== ====== ============================= ======================================================= ================== 13 29 95.5 39 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : GACAGTCAGTTTTTTGTTTATCTGAATAATATTTTACTTAAATTATTAGAGGTCTTTTTGTACATTTCTTCTAAAACATAAGAATATATATTCATAGTTAGTTTTAAATCTGTATGACAAAATCTTTCAGAAACTATTTTCATATTAGTTCCTACCAAATGTAACAAACTAGCACCTGTATATCTTAAATTATGTATTTTCATTTGTCATTAGGTATTTTTAATACATTATATAACTATGATTTTATTATTTGAAATCTAAGTTATAAATACTATTGATGATAGAGTAATTGTATACAAAAATATATAATATATTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAAATATGTTTAAGCATTGAAATGTAAGGTATTGATAGTGATTGATAAACATTATCATTTGCACTACTGTTCGCTCACTGCAAATTTAAGAGAATTGCATATGTGTGAGTATTGGAAATTCTACGTTTATTTTAGG # Right flank : ATTATCTTATTTCTATTTGTAACTTTTTTAAGTATGTATTGTCCAGTTGTAATTTGTTTTTATTATTTTAAACTTTCAATTCCAAAATTATCTAATATAATTGAATTAACTTACTTTCTTTTTTTATTTTACCTCCTTGTTCTCTAATTAATTTATACATTTTATTTATATTTAAGAATACATACTCTAATTTGATTACATAAAATAAAATGTTTTTCTACTATAAATTAAACTCTTTAAAAAATATGACTCAACTACTTTAATTTTTATTCTAATGATACATTAATTCTAGACATAATAAAACTCTCCTAGCTAGATGATTTTACATGTTTTAACTATCTCCTAAAAAAGTATAGTTTGATAAAAAGAGCATTTTTATATAAGCACCATACTTTTATTGTGGAAGATAATTATTTTATGAGGTATTGAAAACTTACATAAAATCTGTGGATAAAAACTCATACTTTCATTTTACTGACATACATCTAAACATAATAATA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2251084-2249472 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021319.1 Clostridioides difficile strain DSM 101085 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2251083 30 100.0 35 .............................. GATAACTCTTTTCCAATTTGCAAATAAACATTCAT 2251018 30 100.0 36 .............................. CTGTATTTGTTTTTACAATAGTAGAATAATATTATT 2250952 30 100.0 37 .............................. TAGTAAAAAACATAAGAGTAAGAAAGACATTACTAAT 2250885 30 100.0 35 .............................. GTTATTCGGAGATGCTTCTCCAACTTTTGTAGCAG 2250820 30 100.0 36 .............................. CTATGAATAAGTATGATAGGTTTAAATGTAATAATT 2250754 30 100.0 36 .............................. CTTTTAGTTAAGTCAATTGGACGTTCACCTAAATTA 2250688 30 100.0 38 .............................. AGAGAAGATGGTTACTCAATTAGAGCTTAATAGAGCAA 2250620 30 100.0 35 .............................. CTATATTTGGGCTTGTAAGTGTGATTGTGGAAATG 2250555 30 100.0 36 .............................. AAAAAAAAGAGCGTCAGCCTCCAGGTGGAAATTGGA 2250489 30 100.0 36 .............................. TATTATAAAAATAATATTCCAAATGTTGAATTTATA 2250423 30 100.0 36 .............................. TACGAAGATGGTAACGTCTTTAGAAAGTGGTAAAAA 2250357 30 100.0 36 .............................. CCATATTGTTCCACCTCCTTCCGTTATGGAATTTGG 2250291 30 100.0 36 .............................. AGATAGAAAATATGGCAAATGAGGATTTCGTACCAT 2250225 30 100.0 36 .............................. TCATAAAAAAGCTTTTATAGAAGATAACTTCGACGA 2250159 30 100.0 36 .............................. ACAAATGCCAACCTTAGCTCCGATTTTTCAAACAGC 2250093 30 100.0 36 .............................. AAATAATATAATTATAGAAATTAGTACAGAGCAAGG 2250027 30 100.0 36 .............................. AGAGACCAGGGAAAGGCAGGTAAAGCAGTAAGTAAA 2249961 30 100.0 36 .............................. ACAGTAGCTATTCCAATTTCTTCTGCTTGTGGCATA 2249895 30 100.0 36 .............................. TCAAAGATGCCCCTCTAGCTGGTTTTTGGGTATCTA 2249829 30 100.0 36 .............................. TGTGTTGAGTCGTGATATTGACTTTTTCGGAAACGG 2249763 30 100.0 35 .............................. TTGTAGTCCTTCCATTTCCATCACACAAAAAGCAT 2249698 30 100.0 35 .............................. TCTATGTTATGTACATGATTACCTTGTTTGAGTAG 2249633 30 100.0 36 .............................. TAAATTATTAGTTTTAAAATTTAAAGGGGGAAAAAA 2249567 30 100.0 36 .............................. TCATTAGTACTTGTTATTCCAGTAAAAGCTACTTTG 2249501 30 93.3 0 ...............A........C..... | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.7 36 GTTAAACAGTAACATGAGATGTATTTAAAT # Left flank : CAGATTTAAAAGAGTATACAATCTTTTTAAATACTATAGTTAAAGATGAATCTGGAAATATGATTGTAGGAAGTGATGTATGGTATGAATATATATCACTACTAAAAAATGATAATGTTGAGTATTCTGAAAAGAGGGTGAAAATGTCTGAAATTATGGAAAAACTAGATTATTTTACGTATAAAGTTCAGAAATTTGATAATTCATTTAATGATTTAGTTGGAGATATTTTTTATATTGATGATGGAAGTAAGTATTTTACAGAGGGAAAGTTTGATAGAAGTAAATTTAATCAAAATGAATTTCTATAATGTATTTAGATTATATAGAGAATATTTATCCCAAGTTAATTAATTAGAATTAGTTTAAAGCTATTGAAATATAGATATTTTATATCTTATATATATTTTCTAGGATTAGCTGGGATAAAAAATCTGTATATTAGTGTTTTCAGTGTATTTAAGGGAATTATATTTTTAAGAAGTACTGATTTTAAAGTG # Right flank : TACTCTATCATAAAATTTTAATATATTAAACAAACTAATATGTGATATACTTATGTATAAATAACAAAATAAATAGGTGATGTTATGAAAATTACAGGAACTTTGATAAATTACTATTTCCATTGTAAAAGACAATGCTGGTTGCTTGGTAATAGAATAAATTTGGAAGAAAATAGTGAAGATGTAAAAATAGGTAGACTTCTTCATGAACTAAAAGAAGAAAAATCAAAATATAAAGAAATTGCAATTGAAAATATAAAAATAGACAAATTAACAAGAGAATATTTAGTAGAGGTTAAAAAGTCTGATGCTGATATAGAAGCTGTTAAGTGGCAAGTTCTTTTATATTTAAAAAAGTTAAAAGAAAAGGGAATTGTAAGAAAAGGGAAAATTGAATTTATAGAAAAAAATAAAACTAATAAAAAAATAGTCTTTGTAGATTTGAGTGAAGTATCTGAAGAACAGCTTATATCTATAGAAAGAGAAATTGTTAATTTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 3179278-3178920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021319.1 Clostridioides difficile strain DSM 101085 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3179277 29 93.1 37 .AG.......................... GCTGTATCCTTTGCCCCTTTTGCTGCGTCACTCAAGG 3179211 29 86.2 37 T............A.T............G TCGTTTATCATTGCTAGCCTCGCATTCGTACTGGTCA 3179145 29 93.1 37 A...........................G ATTCGCGATACTATTTGTGCAGTATCTAAGTAGGATG 3179079 29 100.0 36 ............................. CATTCACTACAAAATATATATTCTAATGTATCATTC 3179014 29 89.7 37 ...............TA...........C AATATATATAGCAAATCTGTTATATTAACTATGAAGG 3178948 29 82.8 0 ...............T....AC.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 90.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTTGTGAAATTATTAAAAAGATTGATTTAGAAGATAGTGAAGTTAAGGGAGTTTGGGAGACCAATGGAAGTTGGACTGGTACTGTAAATAAATATACAAAGAGTGTAATAGACAAGGTGAGAACTTGGATAGAGGAGAATAATAGACCTACTAAGATTGCAGGTGAGAAGAAGAATTTCCATGTAGTGTATAAAATTGAGTAAATGTATAAGATTGTATTAAATAATTTAGTTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATAGATAGAATAGAACTTATCAAAGAACTTGGAAATATCTTTGAAAAAATGAAAAATGAAAATCCAGATGAATTTTATAGATTTGTAAGTTTAGTGAAAGAAGAGTGTAGGAAAAAAGAAGAGAAAAATAAATAAATAGACAAATAAAGCACTTGAATATTTTACTGTTTCAAGTGCTTTATGTAGTAAAAAATGATATAATATAGGTAG # Right flank : TAAAAATAATTAAAAAACACTTACTAATGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTGAAGATATAGTATAATATTCTTATAAAATATAATTTAGGGGGATATTATGAGAGAAGGAAAGAGAAGAAGAGGATGTCTATTTTGGTTTATTCTTATTATTTTATTTTCTGGAGTTGTTGGAGCAATAGCAGGGAACAGTACTAATAATGAAAGCACTGAAAAACAGAAAGAGGATTTAACTAAATATATTGGTGAAGAAGGTAGTATAGGAGATTTAAAATTAACTGTTAATAGCATTTCAAAAGCTAGTGAAATATCAGTAGCATCTGGTTATTTAGCATACACTCCAGATAGTGGCAAATATGGTATTATAAATTTAACAATAAAAAATCAAACTAAGGAAAGCCAATCTTTTATGCTAAATTCATTCACATTAATAGGACCAGATGATTCAAAATATGTTCCATCTTTATTGATTGATGTA # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 3239792-3238192 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021319.1 Clostridioides difficile strain DSM 101085 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3239791 29 100.0 36 ............................. TCAATTTAATGTAAATGTTATTAGATTCCAATTCCA 3239726 29 100.0 37 ............................. GTGTTTATGCATTAATATATAATGTATAAACGTGATA 3239660 29 100.0 37 ............................. TAGTTGCCACATCCCTCTTATATTCTTCTTTTTCATC 3239594 29 100.0 36 ............................. TATCAGTATAATCATCTTCAATGCCGTATAATTCTA 3239529 29 100.0 35 ............................. TTGCTTGTAACTTCATCTGTTGTAGAACCAGCAGG 3239465 29 100.0 36 ............................. TTCAAGTGAGGTAGGAGAAGTGAATGGTTTTGATAG 3239400 29 100.0 36 ............................. CTATATTTAGAGAATTGTTGTATGAGTATAAAGAAA 3239335 29 100.0 37 ............................. AAAGTTAGTACAAATACAGATTTATCATCATCAAAAG 3239269 29 100.0 36 ............................. TGCAAGTAGTGGTTTAATCTAGGTTCGATTCCTAGA 3239204 29 100.0 35 ............................. ACGTTTAGTTTTAAAAAGGAACTTGAATTAGCTAC 3239140 29 100.0 37 ............................. AAAGACTATAACTGGAGACACTGGAAGTTTTACAATC 3239074 29 100.0 37 ............................. GTATTTGGTGTAGATTTCCCAGCTGCATCAGCTGCTT 3239008 29 100.0 37 ............................. ATAGGATGGACTATAACAGCTGTAATTGCATTGTCAG 3238942 29 100.0 37 ............................. AATGTACATCATTACCAAAAGTTCTGATTCTGGAATC 3238876 29 100.0 39 ............................. AGAGACAGTTTAAAACTAAATCAGAAGAAAAGTCTTATA 3238808 29 100.0 37 ............................. TTTAAAGCACCCTTAAAATCTGGTTGGGCATGTTCTC 3238742 29 100.0 36 ............................. ATTGTAAGCTCTTTAATTTCTAAATTAGCTCCGATT 3238677 29 100.0 36 ............................. CTAGTAAATTTTGCTAAAAGGCACTATTATTGTAGT 3238612 29 100.0 37 ............................. TTATGTTATAGGAGCAGGTTGCAAGAAGTATAAGCAA 3238546 29 100.0 36 ............................. GGGTTTGCATCTTTATTAGATAATTTTATTAATAGA 3238481 29 100.0 36 ............................. TAAATATAGAATAAAGCATTTTAGTTTACAATGCAA 3238416 29 100.0 37 ............................. ACCTAAAAAATCAATGCAGCTTATCTTATATGCAATG 3238350 29 100.0 36 ............................. ATTAAGGAATAGTAATTACAGTGGACTGGAGTTAGT 3238285 29 100.0 36 ............................. ACGTTTCGCAAGGGATTTTTTAAAGCGAATGGATAA 3238220 29 82.8 0 ................A.CA...C....T | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 99.3 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGAGAGGATTCAATCTATATTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGCTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGACATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGTTTGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATGATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAGAAAGCACAATCAAAGCACATGGCTTTATAAGTAAAGAATACTGGCAAAATAACCATAATGCTGTTAAAAATGAGTATATACCTATATCAGATACATTTGTATATGATATTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGTTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTGAAAAATATAAAAGTCTAAGTTTAGCAGTATACAAAGATAATAAAAAAGCAGTTATTTTTTATAATAAAAAAGGTTTTAATGTAGTAAAAGGGCAATTAAATGAAGACTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTGTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //