Array 1 146016-148362 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWP02000004.1 Salmonella enterica subsp. enterica serovar Amager strain HIY0116 NODE_4_length_418166_cov_17.580147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146016 29 100.0 32 ............................. CCTGCAACGCGATTTCAAGTTCCTGAACGCTC 146077 29 100.0 32 ............................. ACGAAGCGCCTGGTTGAGATTGTACACGGCGA 146138 29 100.0 32 ............................. GATTCATAATCCGTATGCCTTTTTTAAATAAA 146199 29 100.0 32 ............................. GAGATCACACCCACAGTCTCCAACTTCATTAA 146260 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCGCCAGGTTGAA 146321 29 100.0 32 ............................. GAGCATTGCGTTGCCTCTTATGCGTCGTGGTG 146382 29 100.0 32 ............................. TACAGCAACGATATGATTCTTTGTTAAGTAAT 146443 29 100.0 32 ............................. TCTGAATTAATTAAAAAATTTGACGTCAACGG 146504 29 100.0 32 ............................. TGTACCGACCCGGCGTCTGGAACGGACAACCA 146565 29 100.0 32 ............................. TGCGGAATTATTACCTATATCACGATCGGTGC 146626 29 100.0 33 ............................. CGCGAGCTATTCCGGCCACACCGCGTGAAATGC 146688 29 100.0 32 ............................. GGTTTATGCCGTTGGACGAAATCGGCCAGGGG 146749 29 100.0 32 ............................. GGTGGACGGCCAGCCTGGTAACGATGGACTGG 146810 29 100.0 32 ............................. GGCGGCGATTTGCCCGCGTTTATCTTGCTGGT 146871 29 100.0 32 ............................. CCGGTCAGCACACCGGGTGTGCTGGTTTACGA 146932 29 100.0 32 ............................. CCTCCTGCTCAGGTGCCGAGAATTGAGGGCGC 146993 29 100.0 32 ............................. TTGATGACGTCGCCCTCGCCGTCTGCGACCTC 147054 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 147115 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 147176 29 100.0 32 ............................. ACATCTCGGCGTCTCGCGTGATGTGGCAGGCG 147237 29 100.0 32 ............................. AACCAGCAGAGTTAGACGTGTGGCAGTTCGGA 147298 29 100.0 32 ............................. CCTATTGAGGTTCATCCCCGCTAACGCAGGGA 147359 29 100.0 32 ............................. CAGTCGGGCGGCACAGGATCAATATGAGCGTG 147420 29 100.0 32 ............................. GTACCTGTCAGTTTAGCTTCAGCGATGAAAAG 147481 29 100.0 32 ............................. TTCAGGATGCCAACTGGCGAAGAGTTGCACGT 147542 29 100.0 32 ............................. TCACAGCAAACAATTTTGGACGTGTGTTGCGG 147603 29 100.0 32 ............................. CGGGCGCCAGTTCTTTTTGTTGCCTACCGGCT 147664 29 100.0 32 ............................. GCTGAGGGGATGGCGCTTAAAGACTGGCAGCA 147725 29 100.0 32 ............................. AATCACCGCCACTGGACGCGCTGCGTTTTGCG 147786 29 100.0 32 ............................. AATCACCGCCACTGGACGCGCTGCGTTTTGCG 147847 29 100.0 32 ............................. GCGACTCCAAAACAGCGCCCTACAAGTCAAAA 147908 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 147969 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 148030 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 148091 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 148152 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 148213 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 148274 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 148335 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCTGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGAGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 164644-166383 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWP02000004.1 Salmonella enterica subsp. enterica serovar Amager strain HIY0116 NODE_4_length_418166_cov_17.580147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164644 29 100.0 32 ............................. TTAATCCGCGCATTCAATCACCTGAATACGTT 164705 29 100.0 32 ............................. GCGCCAATTTAAATGGACAGATTAGTGAAATT 164766 29 100.0 32 ............................. CATTAAATAAATCTAGCAATTCCTTTTGTCTC 164827 29 100.0 32 ............................. AGTCACTGCGGCGGGATAACCACGGGATGAGT 164888 29 100.0 33 ............................. CCTATTCGTATGTGCTTCCTGCTGATTTTCTGC 164950 29 100.0 32 ............................. TACGTTACTTCATGAGCATCCAGAAATGACAA 165011 29 100.0 32 ............................. CAGCTCGACGACACTGAACAGAGCGGAATCCC 165072 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 165133 29 100.0 32 ............................. AAACTGCTCGAAATTGTCGCCTATTGGGAAAT 165194 29 100.0 32 ............................. ATTATCTTTCACTTGCTTCAATAAGCCCCCGC 165255 29 100.0 32 ............................. CGGCGCACGTCGCTGGCCGATTCCCTCCACAC 165316 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 165377 29 100.0 32 ............................. TGTGCGCCGCGTAGGGAAAAAATACGGGTGCG 165438 29 100.0 32 ............................. CCGCCACGGTCTTTAATTCGGGGTATTCAGTG 165499 29 100.0 32 ............................. AGGTACTGTGCACGTAACGCGTCGAGGGCCGG 165560 29 100.0 32 ............................. CTACGGACTCGAAAGAATCGATGGATCTTGCT 165621 29 100.0 32 ............................. TTGCCGTCAGATACCGTACCTAAACCCCGCAG 165682 29 100.0 32 ............................. GACGCGATCGTCGAATATCGCAAACCAGCTCC 165743 29 100.0 32 ............................. GAATTAACAAAAGAGCAGTTAATAGAGGGGGC 165804 29 100.0 32 ............................. GAAAATCACCTTGATAGTTCTGGCCGCGAGAG 165865 29 100.0 32 ............................. CCTGGGGGCGTATGACGGTGTGACGGATGAGG 165926 29 100.0 33 ............................. CGCCGTTACGTTGCCCTGGGTGTTCTCGCCCGC 165988 29 100.0 32 ............................. GCAGGAAGACGCAGACGCGGCGCCCGGTGAAG 166049 29 100.0 32 ............................. GGGAAGGTCAGCCGTTCGCGCAGCACGTCGAT 166110 29 100.0 32 ............................. GTTATGGAGATCGGGAGAACAAACGCGCGGAA 166171 29 100.0 32 ............................. CCCGCCGCCGTCGCGTTTAAATACGACAACGC 166232 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 166293 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 166354 29 100.0 0 ............................. | A [166381] ========== ====== ====== ====== ============================= ================================= ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //