Array 1 107742-106265 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNR01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1570 NODE_11_length_170229_cov_11.7608, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107741 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107680 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107618 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107557 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107496 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107435 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107374 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107313 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107252 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107191 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107130 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107069 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107008 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106946 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106843 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106782 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106721 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106660 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106599 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106538 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106477 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106416 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106355 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106294 29 96.6 0 A............................ | A [106267] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125366-123873 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNR01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1570 NODE_11_length_170229_cov_11.7608, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125365 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125304 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125243 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125182 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125121 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125060 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124999 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124938 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124877 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124816 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124755 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124694 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124633 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124572 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124511 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124450 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124388 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124327 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124266 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124205 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124144 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124083 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124022 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123961 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123900 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //