Array 1 2022157-2018505 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024712.1 Bifidobacterium bifidum strain YIT 10347 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2022156 33 100.0 35 ................................. TCCAGCATGCGATACCAATCAACGACAGCGACAGT 2022088 33 100.0 33 ................................. AAAATGGAAATGCATATAGCATCCAAGGGTATG 2022022 33 100.0 34 ................................. TGCGTCACGTCCGCATTATACGTCGCTTGTGCTA 2021955 33 100.0 34 ................................. AAGATAAAACGTATCCCAAAAGCGACATACCACG 2021888 33 100.0 34 ................................. GACGTTATCATGCAACGCAACGAGCAAGCGCTGC 2021821 33 100.0 33 ................................. ATAACCGTTCGGGCCGCCCCGTATGCGCGGGAG 2021755 33 100.0 34 ................................. ACACTGTCGGCGGCCATCTACTTGGGACAGGCCG 2021688 33 100.0 33 ................................. GCTTCACCGCATCGTCACGCGCCAACGAGTCAG 2021622 33 100.0 35 ................................. CCTATGACCATGATGTGGTTGAACAGTACGAGGCC 2021554 33 100.0 34 ................................. TTCATTAAACCGCTGTTGGACAAGATCATGTTCG 2021487 33 100.0 34 ................................. AATCAGCGATATGCGCTGTTCAGTGATTACGCCG 2021420 33 100.0 33 ................................. TGCATGAGGCTACCGTAGGTGTCGGAGAGGTTG 2021354 33 100.0 33 ................................. CACCGCGCGTAGGGCACTGTGAAGCCGACCTCC 2021288 33 100.0 33 ................................. TTGGCCTCTACCACGGTGATGATCTGGTCCTTG 2021222 33 100.0 34 ................................. CGCGCATCAGTGTGCTGGTGCGCAAGCAGACCGG 2021155 33 100.0 34 ................................. ATCATCTGTCTTGCGATATACTCATATTATCAAA 2021088 33 100.0 34 ................................. TACGGTGGTGTCGCCCACCAGCTCATAGTTGTTG 2021021 33 100.0 35 ................................. GACAGCGCCCCCGACAACCGTCCCGACGTAGCCCA 2020953 33 100.0 32 ................................. AATCAGCAACACCATTTGTTGCGGATTAGCAT 2020888 33 100.0 35 ................................. AGAATCTGAGAAATCATCCCGCCCAAACCGGAGAA 2020820 33 100.0 33 ................................. ATCTCGTAAAACCACACTGACGCTTCGGGGCGA 2020754 33 100.0 34 ................................. CCAGAACGATACCCCTTGATACTATATATGCTGA 2020687 33 100.0 34 ................................. TAATCCGTCGATTATCGCATCCATTGCCGTAACC 2020620 33 100.0 35 ................................. TCGGTACCTTGTGACCTCAACAAAACAAATATTGT 2020552 33 100.0 33 ................................. TTTATGTCAACGTAAAAACGTTGATAAATCAAG 2020486 33 100.0 35 ................................. TATGCGCGGCGCGATGTACAGGTGATACCGCAATA 2020418 33 100.0 35 ................................. TGCGTGCAAAAAGCATGTTAGATTGCAGAGTGACA 2020350 33 100.0 34 ................................. ACGGCGTGGGGTATAGCGATATGCCCACGGTCGA 2020283 33 100.0 33 ................................. GTCTTTGTGTGCACCACATATGACAGATCAACG 2020217 33 100.0 34 ................................. TCGGTGAGATAGTCGTTGCCTATTTCGTCCGGGT 2020150 33 100.0 34 ................................. TTCGCGGTCGTGGAGTTTGACGACTCGATGATTG 2020083 33 100.0 34 ................................. TTGTGTGCATCGTGTAGCCGAGTGAGTAATAAGG 2020016 33 100.0 35 ................................. CGGCTATGGCGACTGTAGTTCGGTGTGCTGGAGGG 2019948 33 100.0 34 ................................. TTACCATGCTTGTCGGCGGTGGCGTCTCTATCGT 2019881 33 100.0 35 ................................. CCATCCTTACGGCGGGGGGGGCGTTTCACTCTCGA 2019813 33 100.0 34 ................................. CCCTACGTCAACGCGATAAGCCAACGTTTCTCGA 2019746 33 100.0 33 ................................. ATCGACGACCAGCCCCAGACAGTCGAGATCAGC 2019680 33 100.0 36 ................................. ATCGACGACCAGCCCCAGACAGTCGAGATCAGCCGC 2019611 33 100.0 35 ................................. CGGGCGAGGATGGTGCGGTCATCATCGGCGAGGGC 2019543 33 100.0 32 ................................. ATCACGATTCTAAGGAGAATCCAATGAACAAT 2019478 33 100.0 34 ................................. CGATTTCGGGCGCAACCTCGCCGGACTCACACGC 2019411 33 100.0 35 ................................. TGCTCAACGGATTGCAGATTGGCGCTAGATGGGTG 2019343 33 100.0 34 ................................. TGCAAAACGGCCTCGACCGCACCCCACCCGTAAT 2019276 33 100.0 34 ................................. TCGAGTCCAGATTATTGTGGAGGCCGCGGAAGAT 2019209 33 100.0 33 ................................. CGCGACGTCCTCAAGCAAGACCGTTACCTCATG 2019143 33 100.0 34 ................................. AACGGATTCGGCTTGGAATCCAAACGAACCGGAG 2019076 33 100.0 36 ................................. CTGTAAAGCGCATACGCGTTCAACGCGAACTGTATA 2019007 33 100.0 34 ................................. GGCGAGTCCGAGTGGCTGGGTATCGGCGCGGTCG 2018940 33 100.0 34 ................................. TGCAACTCGCCCAGCAGCGCGGCGTAAACCTACA 2018873 33 100.0 34 ................................. ACGGTTTTCCGGCGTGCCGCCGGATACCACGTCA 2018806 33 100.0 35 ................................. AGGTCGGCGCATACCCGTTCGTCGTGACCGCCGAC 2018738 33 100.0 35 ................................. ATGGACATTTCCGGCAAGGGCAGCGACACAATCGG 2018670 33 100.0 34 ................................. TTAAGCTCGGCTCCGTTGGACTGGAGTTTGTCGA 2018603 33 100.0 33 ................................. CATGGTGTGCGTGCACCGGACGCGCCCGATATC 2018537 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 55 33 100.0 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : AATACGGTCAACGCGTGCAGAACAGCGTTTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTTAAGCATGATCTGGCGAAGATTATGGATGAGTCGCAAGACAGCCTGCGGTACTACAATCTTGGGGCGAAGTATTCTTCGAAGATTGAATATCGGGGAAGGCAGCGACATTTACCGGTCGATGGCGTGATGATGCTTTGACGCCGCATTGGCATGCGGCATTCGGTGGACTGGAGCGGTGTACGACGTGCGGAGATCGGCCGGTGCGAGCCTTGAGCTCTCATGAAGCACTGGGTCGTTCGCACCACGGTTCATGGCTTCTGAGGACGGTGTGTGTTCTTCTTGCCGTTTGATAACTCAAGAGTGAGTGATCTGCTGGCATATCGATTCAGCGGATTCGCATATCGGGGAAAATGCGGGTGAATCGTACGGTACAATTGATGCCGTGGAATGGGTGGAGTATCCATATTTTGAGATATGAAGTCCATTCTTGCG # Right flank : GAAGCGCTGCTGAAGGAAGTCAAGGCCGTGATCGACAATCCGGACGCCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGACTTCGAGTACGAGTATGCGACTCCTGATCCCGATCCTGACCCGGCCCCGGGTCCCGATCCCGACCCGGAACCGGACCCCGACACTCCCGGTACGGATGACCCGTCCAAGCCCGGAACCGGCGACACGGATACGGACAAGCCCGGCAACAAGCCCGGTGACGGAGCGGAAGACAGTGGCAAGACCAACGACAAACCCAAGCCTCCGCTGTCGGCGACCGGCGCGAACGTGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCGCCGTAGGGGCTGAACATGACCGGTGCCGGAGAGTCCGATGCTCTCCGGCACCGTCATATGTCGAACTCTTGCATAGGGTACCTTAAATCAGCCTGATCTGATAGACTGTCTGCGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //