Array 1 2772675-2764379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUM010000001.1 Clostridium beijerinckii strain DJ077 Ga0423243_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2772674 30 100.0 35 .............................. GCAGGTATTGCATTAGCAGCAGTATCAGCGTTAGG 2772609 30 100.0 37 .............................. GAATTAAGTCCTGAACAGCAAATGTTTTATGCTAAAC 2772542 30 100.0 35 .............................. GGTAAAACCCATGTAAGATGTATATTAAATGATAA 2772477 30 100.0 35 .............................. GCTAATAATATAGTCTCTTTTCTGCATCTTCTTCT 2772412 30 100.0 34 .............................. TAATTATCTTCCTGAAGGTGGAACAATTAATGAA 2772348 30 100.0 34 .............................. ATTGAAACATTACAAAAGGAGATAAAAGAAAGAC 2772284 30 100.0 36 .............................. ACTATGAAGTCACCTTCCTCATTTCTTCCTATTGTC 2772218 30 100.0 35 .............................. CCCAGCTATAAGACTTATTTTATCAATAATTACTG 2772153 30 100.0 36 .............................. TATAATAATACTATAAAGGTGCATTATGGAAAGAAA 2772087 30 100.0 36 .............................. TGGCAGAAGGTTTTGGAAAAAAGGCTTAGAGGAAAT 2772021 30 100.0 35 .............................. AATAAACTTAATACTATCAAATTTATACCTCCTTG 2771956 30 100.0 35 .............................. GCAATTACCCTTAATTCCATTTCTACCCCTCCAAA 2771891 30 100.0 34 .............................. GAGTAATGACCATGACCTATTATTCACTGTAGAA 2771827 30 100.0 34 .............................. GGAAGCTTAATAGACAAGGATGGAAATGTTGTAA 2771763 30 100.0 36 .............................. TGGTGAAGAATTAGGTATTGGAACAATTTCATTTAT 2771697 30 100.0 35 .............................. GCTACAGAAAAGTTCTTAAAGCTCTTTTCCGCCTC 2771632 30 100.0 36 .............................. ATTATTATTAGTGTTACATCAGTTACAGTAGCCCCT 2771566 30 100.0 35 .............................. GGGAGCTGATGTTGTTAGAATTAAAGAACTAATAG 2771501 30 100.0 34 .............................. TGGAAGTTCTCTTTAATACAATTAGGTTTTCTTT 2771437 30 100.0 37 .............................. CCATAACTGATTATGAAAATAAGAAAGATTTAGTATT 2771370 30 100.0 36 .............................. TTAGTCTTATTAAAGAAAAATGGAATTAATTTAGAG 2771304 30 100.0 36 .............................. CGCTTTATGAAACTTAAAAGTACACCTTGATAAAAA 2771238 30 100.0 36 .............................. CCTAACATACCTTTCTCGAATTTAGCAAAACTTATA 2771172 30 100.0 36 .............................. GTGCATTTTGATTGAATCTCATAATTATATAAAGTC 2771106 30 100.0 34 .............................. AGTATATGAGCTATATTATATAGATCAAAATGCT 2771042 30 100.0 36 .............................. TGAGAAAAGTTGCTCAAAAAGGTGATGTCATATATA 2770976 30 100.0 35 .............................. GCAAATGTTATATAAACTTTAATGTAATAACTTCC 2770911 30 100.0 34 .............................. GATATAGGTAATGAAATAAGTGATTTTAGAAATG 2770847 30 100.0 35 .............................. CAACAGTTACAAATAATGCTACAAACCCCCAAACC 2770782 30 100.0 36 .............................. ACTACATTTTCCGAACCTATTAAAATTCTATTTAAA 2770716 30 100.0 36 .............................. ACAATAATATCACCAACAGATGCACAATTAGAAGAT 2770650 30 100.0 36 .............................. TCATTTCTTTAGCTGTTTTTTCATCTACTCCGTATT 2770584 30 100.0 34 .............................. AGAGGATAGAAAGAAGGCTAGGGAATGGCTTATG 2770520 30 100.0 36 .............................. TCTGTTAAGGAAAGGAAGTAATAAAAATGAATATAG 2770454 30 100.0 36 .............................. GAGTATAAGTATAAACTTTCAGAATTTATATTAAAT 2770388 30 100.0 35 .............................. AATAAGTGTTCCATCAATGTTAGTAGAAAAAATAG 2770323 30 100.0 35 .............................. GAAACGCTAACAACTACACCAGTTGGAGTTTTATA 2770258 30 100.0 37 .............................. ACGATATACATTTCAGGTCTTGTTAATGCTACATGTC 2770191 30 100.0 36 .............................. AGGCACACAAAGCTTGGATTTAACAGGACAAACTAT 2770125 30 100.0 36 .............................. ATCTCAATTCCCTTATGACTACGATCTTGCTGTAGA 2770059 30 100.0 35 .............................. TTCAGTTAATATTGGAGAAATAGAAATCCAAATCA 2769994 30 100.0 36 .............................. CCGAAACGAGGTTTAACTGTGGCTTTAGTACCAAAT 2769928 30 100.0 35 .............................. ATAAATGTTAAATATGCTGGAGTTGACATAACTAA 2769863 30 100.0 35 .............................. ATAACTCAGTTCCACTAAGCCAAGTTATTGAAAAT 2769798 30 100.0 35 .............................. AATTATATATAATTTAAGTAAAAAAAGAAAGAGGT 2769733 30 100.0 36 .............................. CCTTTCTGCATAGCTCTTACCTCTATTTATTGCTAG 2769667 30 100.0 35 .............................. TGCGCAATTGTCAGATAGGGTGAAGATATCTGATT 2769602 30 100.0 36 .............................. ATGGAAAGTAGTACCCCGTTGCGAGGATGATATACA 2769536 30 100.0 36 .............................. GACACGATATGAAAAGGCTAAGAAGAATAAAAAGAA 2769470 30 100.0 34 .............................. ACTAAAAATAAGTTAAGAATAGTTATATTTGCTG 2769406 30 100.0 34 .............................. GTTGTTTCAATATGATTAATATTATAATCTTTAA 2769342 30 100.0 36 .............................. AATGCATTTAAAATACATCCTTATGAATTGATTGAA 2769276 30 100.0 34 .............................. AGTAATGCAAGTATATATTCTTCAAGGTTTTCTA 2769212 30 100.0 35 .............................. TCCACAAATACTACTGGCGTTCAGTTTTCTCACGG 2769147 30 100.0 34 .............................. TTAAATCCTAAACCCTGCAACTTTTCAAAATCAG 2769083 30 100.0 35 .............................. TACTTGGGATAGTGTTACAAGGACATATGCTATTG 2769018 30 100.0 36 .............................. ATAAAACAAGCAGTAAGAAAAATTGCTGATAGTGGA 2768952 30 100.0 35 .............................. TTGTTAATCATCCTCTCTAAGTTGCATACAAATTT 2768887 30 100.0 36 .............................. GTTAGAACCTTGACTAAGAAGATTACTAAGCTAATT 2768821 30 100.0 35 .............................. TGGATAATAACAAAAGAAGCTATGATAAGAGTTTA 2768756 30 100.0 35 .............................. TAGGGGGCAAATAATATGCCAACTTCGGTAAGTAT 2768691 30 100.0 35 .............................. CTTGTGCCATTTCTCCAATAAATTCAGTTTTTATC 2768626 30 100.0 34 .............................. TGCTATTTCTGATATTTATAGGATTTTACAACGT 2768562 30 100.0 34 .............................. GAAGGAAAGGACGGAATAAGGTTTAAATTAGCAG 2768498 30 100.0 36 .............................. GGTAATTGATAGCGAGACCATAGCTAAAAGTGGCAG 2768432 30 100.0 33 .............................. TAACCAAATCCTTTATTTCTTCCTGGATAGTTT 2768369 30 100.0 36 .............................. TGAACCATTTGACCAGTGGAATATAAACAATAGTCT 2768303 30 100.0 35 .............................. ACCATTAAGTCGGCAGGCCGACTTAATGGTGACAT 2768238 30 100.0 35 .............................. GTACCTATATTGGTAGTGAATATTTGACAATTTCT 2768173 30 100.0 36 .............................. GTACTACCGATAGTTGCTTTTATTTGTGCTGAAAAA 2768107 30 100.0 34 .............................. CCATGCATCTTATAGAATTACTTTTCTCAACAGG 2768043 30 100.0 36 .............................. ATGAAATCAACATCCCAATCCATAGGAAATGCAAAG 2767977 30 100.0 34 .............................. TCTAAAGGTCTTACTAATTCAAAACCAACAATTT 2767913 30 100.0 35 .............................. AAAAGAGCATAAGAATCATACAATTGAGCAATTTT 2767848 30 100.0 35 .............................. CTTAATGGGTTGTAGTTATTGTACAGAAGAACAAA 2767783 30 100.0 34 .............................. ACTCCTATTGTATAGAACGCTTTTGCGTTAGTAT 2767719 30 100.0 34 .............................. GTAAATACTTATCTTAGAAGAACTGAAGAGAAAC 2767655 30 100.0 34 .............................. GTGACATATACTTTTGATGTAGATACACAAAGTG 2767591 30 100.0 36 .............................. GACGAAACCACTATTGCTAATGTAGAAGATTTGGTA 2767525 30 100.0 34 .............................. TAAATAAATGTATTTTGTAAAACCAATAGGTCCG 2767461 30 100.0 34 .............................. AGAGAATCGGTCTCTATTTTTCTTTTTCCATTCT 2767397 30 100.0 34 .............................. AATAGTCCTTCGGGGATTACTAAAAATACAAACG 2767333 30 100.0 35 .............................. TTATTAGTAAAAGTCTTCTCTAACGATTCAATTAC 2767268 30 100.0 35 .............................. CGATTTATAATAAATAATATTTTAATTATTTCCAG 2767203 30 100.0 35 .............................. ATAAATCTATTTCTTACCTCTTAATTTACCAATAT 2767138 30 100.0 34 .............................. TTAGCAGTTTCTATTGAAAGAAAGTCTTCTTGTA 2767074 30 100.0 36 .............................. AAATTTATTCTGTCATTCTTCATATAAAATAACAAG 2767008 30 100.0 34 .............................. ATATGCTGAAATAAATGAACATGCAACTAATATA 2766944 30 100.0 36 .............................. CTTAAAATTTTATTAGATGATGCTACAACAGGAAAG 2766878 30 100.0 36 .............................. TATGCTCACCTTCTATATTAACAACCTTTAAGACTA 2766812 30 100.0 34 .............................. ACTATTCCACCACCAAACTACAAAAAATTTCTAT 2766748 30 100.0 35 .............................. ATAGGTGCTGATGTGATATGATCTACTTCTAAAGG 2766683 30 100.0 34 .............................. TCCACCATAATTGCAGATTGACCAGGTATTTGTT 2766619 30 100.0 34 .............................. AAAAGATAGATGAAGAAAAAGAAGATAGTGACTT 2766555 30 100.0 36 .............................. ACTAGATCCAGTAAAAGAGGCAAATGCTGCAGTAAT 2766489 30 100.0 35 .............................. CCAGGAGAAGCGTTTAATACAATACAATCTGCATT 2766424 30 100.0 35 .............................. ATCTATTATAGATGTAAGAGTTGATTCATCAAGTC 2766359 30 100.0 34 .............................. AACGATGCAGTAAAGCAGCTTATAGCAGGTAACT 2766295 30 100.0 35 .............................. GCATGGGCATAGAAATGATTAGTTGAAGAAAGGAT 2766230 30 100.0 35 .............................. AGATTTAGCGACAGGACAAACTATTGAACTAGAAC 2766165 30 100.0 37 .............................. AATATATTTAGTAGACAATAACTACTCACTTTCGACT 2766098 30 100.0 35 .............................. ACTAAAAATGCTAATAAGAAAATGTTAACATTTGA 2766033 30 100.0 35 .............................. TCCTCAGTTGAGTTAATGCTTCTTTCGAAAAATCC 2765968 30 100.0 35 .............................. TCGAAGGTTCACCCATCAATTATTACCTCCTACAT 2765903 30 100.0 35 .............................. CCGAAGGTTCACCCATCAATTATTACCTCCTACAT 2765838 30 100.0 36 .............................. CCATTAAACGCCAAATCAAGCATATCAACTTTTACT 2765772 30 100.0 35 .............................. TCAGAAACTCGGAGACTAAAAAAGCACTACCACCA 2765707 30 100.0 34 .............................. GTGGGTAGCAAATTACAACCAATGTGTGGATAGT 2765643 30 100.0 34 .............................. GAGTAATATTAATTCGGTCCACCCTGCAGCTGAA 2765579 30 100.0 36 .............................. GTGGGCTTATGGTCCACCAGGTACCGAAGGCCCTTG 2765513 30 100.0 35 .............................. TATGGAAAACCTTCAGGTAGTATAGCTGGGTTCAT 2765448 30 100.0 34 .............................. TAGGTAGCTATTTGTGTGGCGTCTATGCATAAAT 2765384 30 100.0 35 .............................. TTAGCTTTTGTGGATTCATCTTTTTGCCTCCTAAT 2765319 30 100.0 36 .............................. TTATCACCAAAATTAGGTGACCAATAATCTTCTGAA 2765253 30 100.0 36 .............................. AAAGAAAGAAATTACAGGCTTTAGCATTGGAGGAAC 2765187 30 100.0 35 .............................. TCATCATCCAGGCATCTTAAATCGGATTCGGAAAA 2765122 30 100.0 35 .............................. AGTTGAGCAATAGATGCTAATGACATTCCATTTCT 2765057 30 100.0 35 .............................. AGATGGAGAAAAACAAAAAACTAATGAAGAAGGGA 2764992 30 100.0 34 .............................. AGCGGTAGTACAACAGGAGACGCTGAATTAATAG 2764928 30 100.0 36 .............................. ACTATTTCCATATAAATATCCTTAAGTAATATAGTT 2764862 30 100.0 36 .............................. TGTATATCCTTGATCATATAGTATACAATGTTCAAT 2764796 30 100.0 35 .............................. ATTTATCTTCAATTTCTTTAAAGAAGTCGATATAA 2764731 30 100.0 36 .............................. TTTGGTTTTGATTTGACTAAGTATATCGGAGTTGAT 2764665 30 100.0 34 .............................. ACGCTTCATATACGCTATAATACATAAGTACTCC 2764601 30 100.0 35 .............................. TGGAGCTTCAGTAAAATATCAAGTTGCCGAAGGTG 2764536 30 100.0 34 .............................. TCATTTTGAACATAATCATTATCGTTTAAAACAC 2764472 30 100.0 34 .............................. TATCTGACAATTGCGTATTAACGCTAGCCAACTG 2764408 30 93.3 0 ........................A....C | ========== ====== ====== ====== ============================== ===================================== ================== 128 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AGACTTTATTCCTTTTAGTTTAAAGGAGGACATGTAATGAGTAAAACAAGCAATTATAATTATGCATTTGTATTTTATGATGTCAATGAAAAAAGAGTACAAAAAGTTTTTAAGGTATGTAAAAAATATTTGTCTCATTTTCAAAAATCAGTCTTTAGAGGTGAAATGTCGCCATCAAAATTAATAAAATTTAAAACTGATTTAAACAAAGTTATTGATAAAAATGAAGATTTTATATGCATAATAAAGCTAATGAATGACAATGTCTTTGGAGAAGAAGTATTAGGAGTAACATCAGGAGTAACTGGCGAAGATCTAATAATATAATTTACCAGGCAAAAAATAATTGATGCAAGAACAAAACTAGATATAATGCTGAGTTACATAAGTATTTCTAGAACATTAAATTTTGGTAGTGGTACTTGGTAAATTTTTGTGAATATGTTACACTAACTACAGTTAGGGCATTATTCTAGTATAAGAATGGGCTTTTTTCTTTG # Right flank : CAATAACGAACATAAACTTATATAATTTAAGCTCTTGTCAGAAAGTGACAACAAGAGCTTAGCTTTTTTGATTAAATGGATAAATAGAGCCTTATTTCAAAATATTTACGTATTCTATCTATTAATGTATACTTGTATTGAGTACATATTAGATAATATTTTGTTATGAGGGAGTGATAATATGAGTAAATATAGAAGTTCGTACTGTAAAATTTTCATCAACACAGATGAAGAAGAAGAAGTTATATTGAGTTTAATTGAAAAAATAACAATGGGTAGTAAAAAAAGATGGACAATCATCTCGGATTTAATGAAAATAGAATTGATAAACAATGAAGATTTTAGTGAAGAAAAAAGTGTTAAAGAAGAAGACGGTTTTCTATACTCAAAATATTATCTTGGTATTGAGCCTGGAGAAGGTATAAAGGAAGAACAGTATATTACAGGAGTAATAGTCTTGCTGGAAAATCTAAGATCATCAGGATACAAGGTAGTTGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 3221827-3216077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUM010000001.1 Clostridium beijerinckii strain DJ077 Ga0423243_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 3221826 28 100.0 35 ............................ TATTGTCCAGCCGTAAGAGTTACCGTTCCAGTTAC 3221763 28 100.0 36 ............................ CTGGAATTGAAGGTGCTGTTGGTGAACTTGCTGGTG 3221699 28 100.0 36 ............................ GACTATAGTAAAGTGTTGTACTTGCACTTGAAGCTG 3221635 28 100.0 36 ............................ TGATTTAACCAGATAGATGTTAATTTCATGGCTTCC 3221571 28 100.0 35 ............................ GTTCAACTTTCTTTTTAGTCTTAGTTATAATCACA 3221508 28 100.0 37 ............................ TCGATATATATGAAAGATATATTAAAGAAATAGATAG 3221443 28 100.0 36 ............................ GTCTATACGACCTTTCCCTCTACCACTTTGTATTAT 3221379 28 100.0 35 ............................ TACATTGGATATGTTAATTATTTTGTACCAGTTGC 3221316 28 100.0 36 ............................ TAACATCGTCTGATACTCTACAAGCTATAGTTTTTG 3221252 28 100.0 36 ............................ TTGGAAAAGGGTTAGTCGTAAAGCGATTAAAAGAGC 3221188 28 100.0 36 ............................ CCATAACTACTATTTGTAAGTGTAGTTTTGAAGCTA 3221124 28 100.0 37 ............................ ATTTACAAATAGAATTAGAAAAGCAACAGCAGTTTAA 3221059 28 100.0 37 ............................ GCAAAAGGAATGTCTGTGCTTGAAGCTATGAAAGCAG 3220994 28 100.0 36 ............................ GTTGGAAGTGCAATAGATATTGAATTAAATAAAAAA 3220930 28 100.0 36 ............................ CCAGCAGTTGTAGAAGCAATTGACATTTTAAAAATT 3220866 28 100.0 36 ............................ TTTTATCACGTGTAAATTTAGCATTTTTTCTTAAAT 3220802 28 100.0 35 ............................ ATGATACAGGAACCCAAAAAGAAAACAGTAGATTC 3220739 28 100.0 35 ............................ ATTAAAGAGAAGATAGCTAAATTATTAGGATGTAC 3220676 28 100.0 37 ............................ ATGAACACTCTTTCCACTCATTTCAGATAGAGCTTGT 3220611 28 100.0 37 ............................ GCAATTTCATCTATGCCATTCTTACGCTCTATCGCTA 3220546 28 100.0 37 ............................ CACTTATAATATTATTTTTATTTCTTCACACTTGTTT 3220481 28 100.0 37 ............................ AGTGCATTTGCTAAAGAATATATGGTTTTTATTCTTG 3220416 28 100.0 37 ............................ ACATTTATACCAGTGAAGCTAAAGTCCATCCCTAGAA 3220351 28 100.0 35 ............................ TAGTGATATGGAGATGGTTAGAAATTATGTAAATA 3220288 28 100.0 37 ............................ TACCTAAATATTCTCTAGCTTCTTTATGACTTAATTT 3220223 28 100.0 35 ............................ GTTTTTATTTAAAAATTAAAAAGACGAACTATTTT 3220160 28 100.0 36 ............................ CTATACCTATATACATACTGTATTAAACTTAAATAA 3220096 28 100.0 36 ............................ TCTAATCCTATGTAATATTGTTCTTTAGTTCCACTG 3220032 28 100.0 37 ............................ CATAATAAACATACTTATACACATATATTATAATAGT 3219967 28 100.0 36 ............................ ATTTCCTCTAATGTACTACAAGCTTGTTCCATAATT 3219903 28 100.0 36 ............................ ATTTTTTCAGCTAATTGATTTAAGGAAAGTTCTTTT 3219839 28 100.0 37 ............................ GGCAATTTATCAAAAGCTTCTCCAATATTTCCTATAA 3219774 28 100.0 36 ............................ TTTTTCTTTATTGTTCTTTCTGTATTTTCCTCCCAA 3219710 28 100.0 36 ............................ TAATAAAGATGGAATGTGTGGCTCTGAATCAATAGA 3219646 28 100.0 36 ............................ CCGGACCATTTACCTAGTTTTGCAAGTTGAACCATA 3219582 28 100.0 36 ............................ CTAAATTAATATCCAAAGTTTTTGTATTTATGTTTT 3219518 28 100.0 37 ............................ TCATTAGTAGCTGCTTTAAAAACATCCGTCTTTGCAA 3219453 28 100.0 36 ............................ TAGTTATAGCTAAAACTTATCTTATTGCCTTGTATT 3219389 28 100.0 37 ............................ GTTCAATATAGTTATAAGGATCAAAAAAAGAAAGAAA 3219324 28 100.0 37 ............................ TTATTTACAGCGTACTTTACTGCGAAAAATGCCATAG 3219259 28 100.0 36 ............................ TAATTATTAACTTTGGCACCTGTCATCTGTCCCAAT 3219195 28 100.0 37 ............................ CTAACGACAGTAGTCATATCAGGAGCAGTTTCTTCGG 3219130 28 100.0 36 ............................ ACTGTAATCATTTCAGAGATTGGCAAGAAATAATTA 3219066 28 100.0 37 ............................ ATTACTAAAGGTGAAATGGTGAGTGCTGATGCAGTAA 3219001 28 100.0 37 ............................ AAGACATTACAAGGCTTGCAAACAGTCACTAATAAAA 3218936 28 100.0 36 ............................ AGCACTAAGGGAGAACGTAATATGGATCAACAAAGA 3218872 28 100.0 37 ............................ GAAATTATTTATGAAAATAATGCTGAATTACAGGCTA 3218807 28 100.0 36 ............................ TGTCAACACCAAAACAACACTATTAAAAAAAATAAT 3218743 28 100.0 36 ............................ AAATATAAATCATAAACAATAAATAAAAACTAACTT 3218679 28 100.0 37 ............................ GAAGGTAATGATTCAGATGTTAAATTTGGATATGCAG 3218614 28 100.0 36 ............................ ATATTTCAAACAGTTTTTCCTATAATTGGGCAAATA 3218550 28 100.0 36 ............................ TGGGAACGTTGGGAAAATATCATAGAAGAATTTAAA 3218486 28 100.0 37 ............................ ACTATTTTCTCTAAGTTCTTATCATTTGCAGTATCAG 3218421 28 100.0 36 ............................ CTATAAAAAGTAATCATCTTTCTCTAACTCCTAACT 3218357 28 100.0 37 ............................ GTTGAAGTAGCGACTAAAGCTTTTCCAAAAGTAGTTG 3218292 28 100.0 36 ............................ CGTATAAGAGCATTTATTAAATTTATAAAGAATACA 3218228 28 100.0 36 ............................ TCATATAAAGCAAGAGTGGCAAGGTTAGATTTAATT 3218164 28 100.0 37 ............................ ACATTTTTGCAAGGATTGAGTGATTATTTAAGCGATA 3218099 28 100.0 37 ............................ ATACATTCAACCTCAGAAACTTTAGCACCAATTGAAA 3218034 28 100.0 35 ............................ TCGTAAATTCTTGTAGTACCATCACTAGAGTACTG 3217971 28 100.0 36 ............................ CCTTATAATAGCATATCAAGTGCAAGTGCATTATAT 3217907 28 100.0 36 ............................ TTGCAAATACTCTTTATTTTGGTTAACTATATTTTC 3217843 28 100.0 37 ............................ ACAGGAGAAGAAATTACAGTATTACTTAAAATATCTA 3217778 28 100.0 37 ............................ TGATAATGCACAAAGTAGCGTTAAAAACTGTCATTTC 3217713 28 100.0 38 ............................ TCTTAAAATCAATTAACTTATTGTATCTAAATTATTTA 3217647 28 100.0 36 ............................ TTTAATTTCGTGCATCTATTGTTAATAGATATTAAT 3217583 28 100.0 37 ............................ ATATAATATTTAAACTCTTCAATTGTATAAACAGTCT 3217518 28 100.0 36 ............................ AAAGGAACATATATCATAGATTGTTTAACGGATCTA 3217454 28 100.0 36 ............................ AGTAAGTAATCTAAGCTTACATTGAATAGATCAGCA 3217390 28 100.0 36 ............................ GTATTAGATAAATCTTGTGCTTTTAAACCACTTACA 3217326 28 100.0 35 ............................ CCTATAACGATACAATCATCTACAACAGCAATTGC 3217263 28 100.0 37 ............................ AGAGAATTTCTTTGAATAAGTAAAAAATCTTTTACCA 3217198 28 100.0 36 ............................ AATAAAGGGGGAATCCATAACGGAAAAGAATAAGAA 3217134 28 100.0 36 ............................ TAAATACCTCCTATTTAGTACCAGTAACAACATAAT 3217070 28 100.0 37 ............................ AAAATAGCAGTAACAGCCGAAGTAACATTTTCCATAC 3217005 28 100.0 36 ............................ CAAACTATAAAATTAATTAACTATGGAGAATTACCA 3216941 28 100.0 37 ............................ GCAAATTCAATAACCGTTAATAAGTCATACACTTCTC 3216876 28 100.0 35 ............................ ATGAATATTCAAGAAAACAATCTTCACACAATATA 3216813 28 100.0 36 ............................ ACGACAAATAATCAACAGTAACTTTATTACGACGAG 3216749 28 100.0 36 ............................ TTTTCTACAAGATATCCCAATATGTCATTAAGAGAA 3216685 28 100.0 36 ............................ CCAATCAGAGGATTAAAGAAATGATAAAAGAATCTA 3216621 28 100.0 38 ............................ ACTTATAGTTCACGTTCTATATCAAATAATTATTATTA 3216555 28 100.0 37 ............................ TTTGATAAGCGTTGAATAGCTTCATTTAAGGTTTCTA GG [3216535] 3216488 28 100.0 36 ............................ TACTCAGTTTTTAGAGTGGAAGTATGGTAATAAAAC 3216424 28 100.0 36 ............................ TAGGCTAAAGTGGCAGGGTTAAACTCGATATATATA 3216360 28 100.0 36 ............................ GTGCATATTCTGCATTATACAGACCAGGAACAACTG 3216296 28 100.0 36 ............................ CATAAAAGAAAATAAGTTGGATGAAGAAATGAGAGA 3216232 28 100.0 35 ............................ GTTAAAGCAAGAGCAATTCAACTTATGATATCTAA 3216169 28 100.0 37 ............................ GCAAGAGGTCAACATGTTAAATTTGATGGTGAAATTA 3216104 28 96.4 0 .G.......................... | ========== ====== ====== ====== ============================ ====================================== ================== 90 28 100.0 36 GTTTTATCTTAACTAGAGGAATGTAAAT # Left flank : AAGCATCTAATAAAAGATGAAAAATATAAGCCATTGAAAGCTTGGTGGTAAAAATGTTTGTAATAATTACTTATGATGTTAACGAAAAAAGAGTAAATAGAGTAAGAAAAGTTTTAAAAAAATATATAACGTGGTGCCAGAATTCAGTTTTTGAAGGGGAAATAACTGAAGGAAAATTAACAAAATGCATGGCAGAAGTTAAAAAATATTTAGTAGACTCAGAAGATTCACTATATATTTATAGGATTCCTTATACAAAAAACATACAGAAGAAAGTTATAGGGATAGAAAAGAATCTAGATGAATTATTTTTATAATTGCAGTAAGCGATTTTTATTACTAGATACATCTAAAGTTAGAAGAAATCTAGATTTGAAGAACATTTTATTTAGTTGCAAAAATCATTACTGTAGCTTTACTGCAAAAATTTATGTTATAATATAAAAAAATGCACGCTCATGTGGCTAAAATAGGTGATTTGAACTATGTATTTTTTCGGG # Right flank : TAATTTTAAGAGCTTATAAATAACCAAGAGTAGTTGCCAAAAATAAAAAATAATAACTAAAGCCAAAGAAAATTTAAATTTAATTGATTTTTATGTTTACAAAATGGAAGAAAAACTTCTTTAAGTATATGTAAAGCAAATGAGTTAGCTAACCTCAAAGGCTTAATTAAAATTATTTTTATATTTTAGGAGGAAAAAATTATGGGTTATTTAGGAATTAACATGTCAGGATCAAGTATACCAGTATATTCTACAAATATTGAGGATAACACAAGAATAGGAAGTTTGGGATACAAAGAACGATTTGCAGTTACAAGCAGTGGACCAATTGCAATAGTTATAAAGTTTGTAAATTCTTCAGGGAGCTGGGTTGATGGTAGATTAGATCCAGATGCTGATATTAGTGATTGGTGTGAATATTTATTTAGATCAAGCGCAATACCAGCTGGATATTTCCGCACTGATAGTACAGTAAGAATGTATGATTCATCAGGAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //