Array 1 21338-21171 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKU01000005.1 Ruminococcus sp. OM08-7 OM08-7.Scaf5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 21337 32 96.9 34 .............T.................. AAAAAGTAACATTCAGAATTTTCCGACAACCGCC 21271 32 100.0 37 ................................ GGTGTATTTCATCACATCCACGACCGCACCCTTTTTG 21202 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 97.9 36 GTCACTCCCCTTGCGGGAGTGTGGATTGAAAT # Left flank : TAAAAGATGCTTGTTCTGATAACCTATGATGTGAATACAGAAACGGCAGCCGGAAAAGCAAGATTACGGAAAGTAGCAAAACAATGTGTTAATTATGGAAGACGTGTCCAAAATTCAGTTTTTGAATGCATCTTGGATAGTGCACAATGCGTTACCCTTAAGGCTGCTTTGGCGAATATTATTGATGAAAAGACAGATAGTTTAAGATTTTATTATCTGGGAAATAATTATAAATCTAAAATAGAGCACATGGGAATAGAAAGAGGAATATCAGCAGATGATATGCTGATATTATGATGAAAAAAGTTTTGAAGCCAATCAGGAGAGGTGCGAATGCTAAGAATACATAAATTCTCCAGAAGACTCGCACCAGAAAAAAAGAATTGTTATCTGATAAATGGCAGTATATAATTATTTGTATCAGTAATTACAGGTGATTTTGAAATGTTATTTTAGAAGATAATGACAAAATTGAAATGTAATTATTGGTAAAAATTGCT # Right flank : TTGAGGAGATGATAAATTGTTTCAAAATTACGGAACGTCTAAGGAGACGTTATTTAAAGGGATTTTGCTGGCACCGCTCCTTTAAAGCTCCTTTGAAAGCTGTATCTCATGAGTGGCGCTATTGTGCAGACGGTGAAGGTCTGGATGCAAAGGATGATAAAGATTATACAGCCGGATGTGATGAGAGTAAAAATTCATTACTGTGCACGGAGTGGACAGTAACGCTTGTTGTGTATATCGTATGATTCTGAAGAGTATGCTGTGGGAAAGTGAAGTGGATATTTGTAATTGAAGCAGGTGATTTGCTTGATTCGGTTAAATAGTAAGCTGTTACTCAGATAGTTGTTATTTTGTATATCGTGAAGCGTGTTACTGAGAACAGAGTAAATAGTAACAACAGTAATGATTTGTCGGATTACATCATCAGGCTTTTCTTGCCAGTGCTTAAAGAACAGGATATAATATTTTTAACCGAAGTAAACAGATAATCTTTTGCCATA # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCTTGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : NA // Array 1 79240-80530 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKU01000016.1 Ruminococcus sp. OM08-7 OM08-7.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 79240 36 100.0 30 .................................... GTTTTGATGATATTTATATTAAGTGTTATG 79306 36 100.0 30 .................................... CCATCGATGGAGCTGAGGTCCTTCCTGGCA 79372 36 100.0 30 .................................... TCAGAAACGAGCAGAACGAGCTTCGGATGC 79438 36 100.0 30 .................................... TAGTACCTACAGCTGTATCTGCTGCTGTTC 79504 36 100.0 30 .................................... AGAACGATGGACAGGATTAACTATTAATGT 79570 36 100.0 31 .................................... CTCCGACCGTTCGAGACTCCGCTGGCTCTTA 79637 36 100.0 30 .................................... TGACGACTAACTTGAAAGAGAGATACTTTC 79703 36 100.0 30 .................................... TACCGAGCAGAATATTGATCACTTTCAGCA 79769 36 100.0 30 .................................... ACAAAATTCTATGCACAATGCAGAGAAAAT 79835 36 100.0 30 .................................... AGCTGGGATTTAGTTCTGGTCAGTGCTCAC 79901 36 100.0 30 .................................... TTCACAGCTGACAGCGAATAATTTTTAGGA 79967 36 100.0 30 .................................... AAATGAAACTCTATGAAAATAGCCTTTTTA 80033 36 100.0 30 .................................... GTACTGTGTTATAATAATACCGTACCCTTT 80099 36 100.0 30 .................................... TGTAGCTTCTTGCAGGCTGTCTCCCACTCC 80165 36 100.0 30 .................................... ATGCGACAAGAGTAGCTACAAGCGCAACTG 80231 36 97.2 30 ................................G... CCAACGCGGCAAATGTAACTATCAACAGCG 80297 36 100.0 30 .................................... TGGGAAACGGTGTTCACCGGACTGATGGTG 80363 36 100.0 30 .................................... AGCAATTTATTACCCAGGTCGCCCAGGTCA 80429 36 100.0 30 .................................... GTGTGAAATATGGAGATAACAGCGGATGGA 80495 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.9 30 GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Left flank : AAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATTGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGCTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAATCTGACTGAAAAGTTTATAGACTATCTGAGAACCATGAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATTTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACGAAGATGTATCTGATTAATCTGGAAGGAGTAAAATCAGACTCCATCGAAAATGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTTTTAACAACCTTCTATCGCAAGAAGATAACGACTCGGTGAGAACCGGATTTGAG # Right flank : CCAGATGAAGGCCTTGGTACAATTGGAAAGAATCACATTCAGAGCAGTTCTAATTCTTCTTCTCAGAACTGCTCTTTTTCTCTGCTCTGAATGTGATACTTTCCTAATGAATTATATCATGAGCGAAGATGGCAGTGTTGTTGGCCCTTACGGTGAGAATGAATCAAAACTGTTTCGAAATGTAACTGCAGCTGATGTAGGAATTACGGAGAATAAGGGAACTGTAAAATATTACGGTACAAATAATCAGGAATATATCGTAACCTATTCCAAAAGCATGGTGACGGGATGGTATACACTTGCTATGATTCCGGTTAATGTTTTCAGTAAGAATATTGCTACAGATCTTACCAGGGCAATATTGATTCTGGTAACTATAGAAATTATTTTATCTGTAACTGCGGCTGTTCTTATTTCCAGAAAGATCGGGAAAAAAGTTTACAAACCGCTGCACATGATAGAGAAAACAGGCGAGGGTAATTTTAATGCAAGAATTGTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 95143-95603 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKU01000007.1 Ruminococcus sp. OM08-7 OM08-7.Scaf7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 95143 30 100.0 40 .............................. AAAATGTCGTTTACCATGATTTCTAATGTCATAATGGTAG 95213 30 100.0 42 .............................. GTTTGGGGATAGATTAATTATTCAGATTTTAAATTTTTAAAA 95285 30 96.7 49 A............................. CTTCAATGATATTTTCAATGAAGCATTTAAAACTTTCAGTATCATCGAG 95364 30 100.0 43 .............................. ATACTCAGCCTCCAATTCCTCTGGATTAACATGCAAGATTACT 95437 30 96.7 45 ....................A......... AATTTACTATGATAGCATAAGCTCCATCCAATTCCGATTTTCTGT 95512 30 100.0 32 .............................. ATAAAAAGTGTTTTTGACTGAATTAAGAACAT Deletion [95574] 95574 30 90.0 0 C................A..........G. | ========== ====== ====== ====== ============================== ================================================= ================== 7 30 97.6 42 TGTTGTACCGTACCTAAGAGGAATTGACAC # Left flank : GTATGGTAACCCAGGGACTTGGATATTCAGGCAGAGCCGTTTTCTCCGGCGTAACAGAAATGATTGCCAGAACAGTTGTCTGTCTTGGATTTGTAGGCACTTTTGGCTTCACAGCCATCTGCTTTGCAGACCAGACTGCCTGGATCACAGCAACCTGCTATATTTTCCCGACATGCCTGTGGTGTATCCGAAAGTCTGCAAAAATGCTTGTCATCAATAAAAAGTCCGTCGACCTTTAAAACCAGTAAATACAAGGGTTTATGGGAATTGTAAAGGAAAGAAAATTACAGATTAGGATAGAAAAAAGCTGAAATATCACAAAAAAGACTGTCGACTTCAAATGAGAATTTTTTGATGTAGAAAAAGGTCTGGAAATACTGAATTATATGGAAATAATAAGTGTCAGGCAGGAAAATAGGTCGACGGACTTTTTGGAAGAAAAATGGTTGAATTTCTGAAAAAAATATAATACTATATTAATAATAGCAGGAAAAGACTGC # Right flank : CATGTCAATACCCAAAGTGAAAAACAAAGGTAATTTACCTAAATACGAGAGTCGTATCGTATCGCATATTTAAAGTAGTAATGAAAGGTTTAAAATATTTATAAAAGCATGTTTAAGAGATGGCATTTTGAGGACTTTTGTTTATGAGTAAGCAGCGAGTTAAATAGAGGGCATTCGTTTAGTTACAGGAGTATAATTGTGGAAGTTAGGATTGAAAATATTCTGTCTGATGAAAATCTGGCATTGGCAAGGGAATCTTTACAGGGAAAGCGAGATAGCTGTGGACTTGATGGAATCAAAATATCAATGTTTGATGATTATTGGAAAGTAAATGGGGATAAGATAAAGCAGGAAATTTACGTCGGGAAATATGTTCCCGGCGTTGTTAAGTTACACGAAATTGTTAACGTGAAACAAAAAAGACGCAGTATTTCATTGATGAATACGGTGGATCGTTTTATATATCGGACTCTTATGCAGGAGATGAGTCGTTTTGGAGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGTACCGTACCTAAGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 96527-97183 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKU01000007.1 Ruminococcus sp. OM08-7 OM08-7.Scaf7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 96527 29 100.0 34 ............................. GCTATAATCTGATAACCTAGCTGCCTAGTCTCAA 96590 29 100.0 41 ............................. AATTCTGTTGTTATGTACTGCTACATTTATTCTTGTTCTTC 96660 29 100.0 48 ............................. GTATATAAAGGTTGGATTCCTAATTTCTTAGCGACTTCTTTTTCCAGA 96737 29 100.0 35 ............................. AGGTAAACCTGGCTTTTCATCGTATTTCTGAGGAT 96801 29 96.6 40 ...........T................. CTGAAGGAATCATTTTATAAAGATTGTGTACGAGTGATAT 96870 29 100.0 42 ............................. ATGTAATTTCCTTCTTTCTTATAATCGTATGGCATCAAAAAA 96941 29 100.0 46 ............................. TATAGATAAGTCCTTTTGTAAGTAATTTCTGTATTACTTCCTGACT 97016 29 96.6 43 C............................ GTTCTTTCTGTGTTACAGGATCATATTCTGCTTTGTAATTAAA 97088 29 100.0 38 ............................. TAAATACTCATAGTATCTTACGTATGTTGATGTTAAAT 97155 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ================================================ ================== 10 29 98.6 41 GTTGTACCGTACCTAAGAGGAATTGACAC # Left flank : GCAGTATTTCATTGATGAATACGGTGGATCGTTTTATATATCGGACTCTTATGCAGGAGATGAGTCGTTTTGGAGAATAGTAGATAGAACTTATAGGGTTATACAAGGAAAAGAACAATTACTTTTAAGAAAATTGGAAGAAGTATTTTGAAGTTTTGATAATATACATAATGTAACTGTTTGAAATACAACAATAAGACACATTCATATGAATGAAAAAAGTCCGTCGACCTTTAAAACCAGTAACCATAAGGACTTGCGGGTGATGAAGAGGAAAGAAAAATACAGATTAGAACAGAAAAGTGCTGAAATCTTACAAAAAAGACTGTCGACCGAGAATGAGAACTTTTTTAATCTGGTAAAAAGTCTGGAAATACTGAATTATATGGAAATAATAAGTGTCAGGCAGGAAAATAGGTCGACGGACTTTTTGGAAGAAAAATAGTTGAATTTCTGAAAAAAATATAATATTATATCAATAATAGTAGGAAAAGACTGCT # Right flank : TGGGGTAGGACAATCATAGTTAATTATATAAGTAAGAAATATTTGAAAAAATGTTAAGAAGTCATTTTCTTACCCATATGTATAAGTGCAGCAGTAAAAAAGAATGCAGCATAGGACTTAAACTATATCTGTAAAGTGAAGTTTGAGACTTTTGCATATTGGAGGTTAGAAGAAATGAAGAAAAAGCAGAATGCAGATAAACTGAAAATATATAATGCGAGTCATGGAACAGAACGAAAATGGGTATTGGAAAAAGGAAATGTATGGACTCGACCTACTATGAGTATGGAATTAAAATCTCAATATCATAGAGAACGCAGTAAGAAAGAATTTAGAAAAAGGCTGGAAGAATACAAGAATTAAAAAAACTGCTTCAACAACACCTGCTAAAAGTGACATTGAAGCAGTAGTCATAAATCAGGAAGACTGTTTATTTGGGTTTAGTGCATCAACCCATTTCATGTAATACTTTAGTGAGAGAATGATGGCCTCCGGTTGAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCGTACCTAAGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //