Array 1 48731-49918 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJRU01000013.1 Escherichia coli strain MOD1-EC3858 MOD1-EC3858_13_length_140187_cov_98.9751, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48731 29 100.0 32 ............................. TAATACGCATCTCATTCATTGTGCCTTGTCGA 48792 29 100.0 32 ............................. TCCACGTAGACCCTAAAACAGGTAAACGATTA 48853 29 100.0 32 ............................. TCGACAGTGAATTGCTTGCGCAGACGCGTGAA 48914 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 48975 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 49036 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 49097 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 49158 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 49219 29 93.1 32 ..A.........................T AGATCGCGCCACGAGGAAACGAATATGAACGG 49280 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 49341 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 49402 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 49463 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 49524 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 49585 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 49646 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 49707 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 49768 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 49829 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 49890 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75618-76316 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJRU01000013.1 Escherichia coli strain MOD1-EC3858 MOD1-EC3858_13_length_140187_cov_98.9751, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75618 29 100.0 32 ............................. ATTTTGGGGGGCAACCAGGCAGATGAAGTAAA 75679 29 100.0 32 ............................. GCCTGTTTCCTGACGCTGGCCGACAGTCGGCC 75740 29 100.0 32 ............................. CCGGCGCGCTGGCGTCAGGCGTTCCAGTGGTG 75801 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 75862 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 75923 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 75984 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 76045 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 76106 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 76167 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 76227 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 76288 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //