Array 1 3503-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIPG01000103.1 Vibrio cholerae strain 1074-78 NODE_53_length_8821_cov_165.056_ID_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3502 28 100.0 32 ............................ TTAACCAGCAATTAAAGCAGGTTCCACGCAAT 3442 28 100.0 32 ............................ TGACTATAAACTTTGGACGGGTCGCCACTCTC 3382 28 100.0 32 ............................ TTATCCAAGGGATAAAAAAATGCAAAACTTTA 3322 28 100.0 32 ............................ ATTACTTTCAAAAATGGGTATGCGAAAAATGC 3262 28 100.0 32 ............................ TCCCACTCTGAAACCATTTTATTGAAGTGCTC 3202 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 3142 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 3082 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 3022 28 100.0 31 ............................ ATTAACTTTATGAGTCAATGGGGATAATCTG 2962 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 2902 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 2842 28 100.0 32 ............................ TACATGGCATTCATGAGGGACGGCAAGCTGAT 2782 28 100.0 32 ............................ TGTCTGCAAATTATCTTTTGCAAGCTGCAGGC 2722 28 100.0 31 ............................ ATTAAATATCGAGCGCATCAATGATGATATG 2662 28 100.0 32 ............................ TCTTTTTGAGAATTTTTCTTATTTAACTCTTC 2602 28 100.0 32 ............................ TTGAATCGAATGTTCATTTATTGCACAAATCG 2542 28 100.0 32 ............................ TGTTACATCGAGCACTGGTAAACTTTTGGCAA 2482 28 100.0 32 ............................ TTATCCAAGCATACGGTAGACTGCCTGAGTAA 2422 28 100.0 32 ............................ TAAAAACGCGGTCGCCATGGAATCCCCAAGCA 2362 28 100.0 32 ............................ GTTGTACTCAGTTTCATCGTCCGTAAACATGT 2302 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 2242 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 2182 28 100.0 31 ............................ ATCTTAAACATTCTGCGACCAGCTTTGTCTT 2122 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 2062 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 2002 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 1942 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 1882 28 96.4 33 ...........T................ AGATAAGCGTTGTTTAAGCGGCTGCGGAACACG 1821 28 96.4 32 ...........T................ ACGCTATTTGGCGAATTCGTCCACGTAAAAAC 1761 28 96.4 32 ...........T................ TTCGCTTAGTTGAGTTTGAGCAAGATAAACAA 1701 28 96.4 32 ...........T................ ATTTCCTTGATGTGCTTGATTTGATCAGCTTT 1641 28 96.4 32 ...........T................ GTTAAGCGTGGGTTATACATTGTTAATGGTCG 1581 28 96.4 32 ...........T................ ATAATACAACAAAACTCGAGTAACTCTAGCAA 1521 28 96.4 32 ...........T................ ACCAGTGGTGAGCTGAAGCATTGAAGTACCTT 1461 28 96.4 32 ...........T................ GCTTCGATCAAGTCAAAATCGAACTGGTTTGT 1401 28 96.4 32 ...........T................ AGCTCATCTAACTCTTGCCAAACTTCTGGCTT 1341 28 96.4 32 ...........T................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 1281 28 100.0 32 ............................ GTTGAAATACCATGCTTTTTTTGATCTCGAAT 1221 28 100.0 32 ............................ TTGCTGGCTGGTTATGTGATGCCAAACATGTT 1161 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 1101 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 1041 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 981 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 921 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 861 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 801 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 741 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 681 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 621 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 561 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 501 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 441 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 380 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 320 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 260 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 200 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 140 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 80 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //