Array 1 1-1159 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCU01000012.1 Listeria monocytogenes strain ICDC_LM0108 LM0108Scaffold11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 67 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 133 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 199 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 266 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 332 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 398 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 464 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 530 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 596 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 662 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 728 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 794 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 860 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 926 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 992 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 1058 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 1124 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 31 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 6-638 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCU01000010.1 Listeria monocytogenes strain ICDC_LM0108 LM0108Scaffold9_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 72 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 138 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 204 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 270 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 336 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 402 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 468 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 534 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 600 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [625,631,634] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AGCAAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //