Array 1 2899549-2897749 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHW01000006.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03563 2015LSAL03563_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2899548 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 2899487 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 2899425 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 2899364 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 2899303 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 2899242 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 2899181 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 2899120 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 2899059 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 2898998 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 2898937 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 2898876 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 2898815 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 2898754 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 2898693 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 2898632 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 2898571 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 2898510 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 2898449 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 2898388 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 2898327 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 2898266 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 2898205 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 2898144 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 2898083 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 2898022 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 2897961 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 2897900 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 2897839 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2897778 29 93.1 0 A...........T................ | A [2897751] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2917010-2916189 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHW01000006.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03563 2015LSAL03563_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2917009 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 2916948 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 2916887 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 2916826 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 2916765 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 2916704 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 2916643 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 2916582 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 2916521 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 2916460 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 2916399 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 2916338 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 2916277 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2916216 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //