Array 1 169068-171352 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFL01000012.1 Klebsiella pneumoniae strain TUM14778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169068 29 100.0 32 ............................. AAGAACCTTTCGATCGCTGCAATTATCTACGC 169129 29 100.0 32 ............................. GCGTGGACACGGATGTAGTGCTGGAGAAGGCG 169190 29 100.0 32 ............................. TTTACGGAATTGCTTAGGTCGCGAGAATGTCG 169251 29 100.0 32 ............................. TAGTCATTTGCCGGTGACGGGAACCCCATAGC 169312 29 96.6 32 ................T............ ATTAAATAATTCGTTTACGTCCATGACGAGAT 169373 29 100.0 32 ............................. GTAATCCTGATATTGGCGTATCAATGGTCACG 169434 29 100.0 32 ............................. TAACCTCGTTTATGTGCGCGTTTTATAGTTGC 169495 29 100.0 32 ............................. TGCGGGCCACCAGGGTTGCAGGGTATCAATGG 169556 29 100.0 32 ............................. GCCCAGATCGGCTTTTCATCCCGAAGCCGGGC 169617 29 100.0 32 ............................. GACACCCGCACGCGCCGGGCAGGCGTGGAACT 169678 29 100.0 32 ............................. TCGTCGGGTTTATTGAGTATTCCGCCTGATTT 169739 29 100.0 32 ............................. CAGGTCAGCGCAATGTTCCGGGATATCGAGGA 169800 29 100.0 32 ............................. ATGACAAAACCAAAATTGAGTTTTGGCTGCAG 169861 29 100.0 32 ............................. TTGTCCACTTCACGCCAGTAGTCTTTAGAGAT 169922 29 100.0 32 ............................. AATGGAGGTCCGGTTACTGCTGGAAATGTTTA 169983 29 100.0 33 ............................. ATCCCCACCACCGGCGCTGGCGAGTAGTACCGC 170045 29 100.0 32 ............................. GATTGTCTGACAGATAATGCAGCGCAATGCGC 170106 29 100.0 32 ............................. ATGTGAATTTCCTGGCCGGTTGGTAGTTTGAA 170167 29 100.0 32 ............................. TACTGAAACGGGTAATCAGCACAAATACCAAA 170228 29 100.0 32 ............................. CATCGCTTTATGCCGAAATGAGGATGATAGTG 170289 29 100.0 33 ............................. GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC 170351 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 170412 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 170473 29 100.0 32 ............................. ATTTTTTGGGGCACAATTTGGGGCATTTTTTT 170534 29 96.6 32 A............................ AGGGTTTCGATTTTATCGGGATAGAAATGAAT 170595 29 100.0 32 ............................. TGGCGGACGTTGTACCTGTGAGTTAATTCTTC 170656 29 100.0 32 ............................. ACCGCTCCTCTGACGCCAGGAGGGTGTAGGAG 170717 29 100.0 32 ............................. TCCAGGGGCAAAGAATTGCCCATTATCGTACA 170778 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 170839 29 100.0 32 ............................. CTCGGATAAAATGCCTTGCATGAGGCGAACGA 170900 29 100.0 32 ............................. GCGTCCAGTTGAACCCGGCACATTCCCGCTGG 170961 29 100.0 32 ............................. TACGCAGCCGGATCCAGGAGCGCATGGACGCT 171022 29 100.0 32 ............................. GCACGATATTCAGCATCATCAGGACGGTTCAT 171083 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 171144 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 171205 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 171266 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 171324 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCGGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6026-7450 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFL01000048.1 Klebsiella pneumoniae strain TUM14778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6026 29 82.8 32 AGTA.T....................... TCCGGATGATGACATTTCGGGTGATAATCATA 6087 28 96.6 33 ..........-.................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCCC 6148 28 96.6 32 ..........-.................. ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 6208 29 100.0 32 ............................. TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 6269 29 100.0 32 ............................. GCAGCGGCCTGACGATGATCGATATGAACGGC 6330 29 93.1 32 .............A...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 6391 28 89.7 32 ..........-.TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 6451 29 93.1 32 ............TG............... TAATTTAGGAAATGAATTCTAAAATTGAATCT 6512 28 93.1 32 ..........-..A............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 6572 29 100.0 32 ............................. TAAGCTGATCGTTGCCGTAATGCGAAGCGGGA 6633 29 96.6 32 ...............T............. TGACTTTTGATGAGATTTTGTCGATAAAAATT 6694 29 89.7 32 .............G.A............T TCGATGGCAACCACCAGGAACAATAGAACCCT 6755 29 86.2 32 .A......T...TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6816 29 93.1 32 ............TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 6877 28 93.1 32 ..........-..A............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 6937 29 96.6 32 .............A............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 6998 29 100.0 32 ............................. TCGAAGGCAACCACCAGGAACAATAAAACCCC 7059 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 7120 28 89.7 31 ..........-..G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 7179 29 93.1 32 .............A............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 7240 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 7301 29 93.1 32 ............TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 7362 29 100.0 32 ............................. GGCATGAGCGCGAACCACTGCGAGAGTGTGGT 7423 28 86.2 0 ..........A..A.........-....A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 93.5 32 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : TGATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTACGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAGCCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTGAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGTGCTATTTATTATTTTATAATCAACCGGTTATTTTTAG # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGCTAGCGTTAAAGGAACATTTAGCCGTGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTTTCCGTCACATTCATTCAGCTCAGCACCAAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //