Array 1 649715-651024 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEX01000001.1 Salmonella enterica subsp. enterica serovar Minnesota strain 94-0661 NODE_1_length_773099_cov_3.08419, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 649715 29 100.0 32 ............................. ATGTCGGAGCGCTGTCAGTTAATGGAGGGAGG 649776 29 100.0 32 ............................. AAATACTACAATGGCAATCAGGCATCCTTTGC 649837 29 100.0 32 ............................. TCAACGCCCTTGCAGTTATGTGCCGGTTACGG 649898 29 100.0 32 ............................. CGCCTGGAAACATCAGGCGGGCTTTTCGACGA 649959 29 100.0 32 ............................. GAGGTGTGATCACCAAACAACCTGTTGAGGCG 650020 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 650081 29 100.0 32 ............................. CGTGTTAACACGGCTGGAATCGTGCTTGTCGG 650142 29 100.0 32 ............................. AAAACGAGGGATCTGATCTCGCTGTTCGGCGC 650203 29 100.0 32 ............................. CAGGCGAAGAAAATTAACATTACGCATAATCC 650264 29 100.0 32 ............................. AACATCTCCTGTGCGATAACTTCTGTCATTCA 650325 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 650386 29 100.0 32 ............................. CCTGCAATCACAGTCGGAACATACTGCATTCA 650447 29 100.0 32 ............................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 650508 29 96.6 32 ..G.......................... ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 650569 29 96.6 33 ..G.......................... CCGAGTTTAGGTATTGAAAGATCAGAGTTTAGA 650631 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 650692 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 650753 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 650814 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 650875 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 650936 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 650997 28 89.7 0 ..G....................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACACACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 667785-668668 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEX01000001.1 Salmonella enterica subsp. enterica serovar Minnesota strain 94-0661 NODE_1_length_773099_cov_3.08419, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 667785 29 100.0 32 ............................. GCAGGTATGGTTCTGGGATGATGATTGTAATG 667846 29 100.0 32 ............................. AGCATGGAATACTGTCGGTGATGCGGCGAAGT 667907 29 100.0 32 ............................. GGAACGTGAAAGTGTCCACCGGCACGACCTAT 667968 29 100.0 32 ............................. CGGATTCAGCCCTGATAATATGCTTTCCCCCT 668029 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 668090 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 668151 29 100.0 32 ............................. CGCCAGCGCTGAGGTGAATTTTAACGGTGTCA 668212 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 668273 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 668334 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 668395 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT 668456 29 100.0 32 ............................. GCCGGGGTTTCCCGGAGGCATTCTGATGAAAG 668517 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 668578 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 668639 29 96.6 0 ............T................ | A [668666] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //