Array 1 12443-13998 **** Predicted by CRISPRDetect 2.4 *** >NZ_FONE01000043.1 Nitrosomonas sp. Nm166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12443 29 100.0 32 ............................. AAGTGGCAGCCTCCGTGCCTATGTCTACAGTC 12504 29 100.0 32 ............................. CCCGCCCTATTTTTGACGTAATTAAAAATCCA 12565 29 100.0 32 ............................. CATTTACGCAAAAACCATCGACCCGTTTGATT 12626 29 100.0 32 ............................. CATGAGCGCGATTGACAAAATTACCGATACGC 12687 29 100.0 32 ............................. CCGTTGTAATCGTACGCGCAAATCGCGCACTT 12748 29 100.0 32 ............................. GATTATCAGCCAGCGTATTAGTAATTTTGTCA 12809 29 100.0 32 ............................. CAGCATTATAGCACATGGCCGGCCCCGTGTGC 12870 29 100.0 33 ............................. CGGGATACGACGAATCGACTAAACGGAAACCTC 12932 29 100.0 32 ............................. TTGGTGGCGCGACCTACGTATATTTTTTAGAC 12993 29 100.0 32 ............................. CGCGGGTTAGGTATTTGAGTGCAAATCTGAGT 13054 29 100.0 32 ............................. ATTCAGACACGACAACTATTAGTGTGACCAGT 13115 29 100.0 32 ............................. GGATGCGGCGGGAGTTGTCCAGATGAGCGCCG 13176 29 100.0 33 ............................. GTATTCGCGGGCGGTAACTTCGGCTCTGCTGGC 13238 29 100.0 32 ............................. CGCTCAGAATCTGATCTGGATTGGTGGGATAG 13299 29 100.0 32 ............................. GCTATTTGTGGTGGAAAATTAGAAGTTGATAA 13360 29 100.0 32 ............................. TAGATATTTCTGAGCAATTTCATTCTCTTTAT 13421 29 100.0 32 ............................. GGATGGAAGTTGGTATCTATAGAGTGTGTAAA 13482 29 100.0 32 ............................. ATAAAATTATTTTTTCTTTTTTAACTTAATAA 13543 29 100.0 32 ............................. GGTAATGTTTTCAACCAGGCCAAATTTTTCTG 13604 29 100.0 32 ............................. ATTTTGGATTCTGGTTTGCTTAGCGTGAGCGT 13665 29 100.0 32 ............................. TGTGTACAGATTACATGAGGAACGTATCAATA 13726 29 100.0 32 ............................. GAATAAACATGGTCATGCATGATTTGATTAGA 13787 29 100.0 32 ............................. AATTTGTTAACTGATGCCATTTTTTAACCCTC 13848 29 100.0 32 ............................. GCTGATTATAAAATCATCGGTGAATTTGATTT 13909 29 100.0 32 ............................. GTAAATTGATTTCCGTTAACTTTGCTTTCCGT 13970 29 93.1 0 ...........................TC | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.7 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : TCGGGATGTGTTTCGCGAAACCAAATTGCTGGAAAGAATCATACCGGGTATAGAAGAAATGCTTTCCGCTGGTGAAATTTCTCCACCGGCTGCACCAAATGATTCTGTACAGCCTGCGATACCGAATCCTGAAGGGATGGGTGATGCTGGTCATCGTGCTTGAAAACGCCCCGCCACGGTTACGTGGGCGACTGGCGATCTGGTTACTGGAAATCCGAGCGGGAGTTTATGTCGGAAATTATTCAGCCAAAGTGCGCGATTACATCTGGGATCAAGTCGAAAAAGGGATCGAAGACGGTAACGCCGTAATGGCATGGCGCAACAATAACGAAGCTGGGTTCGATTTCGTGACATTGGGTACTAACCGAAGAAGCCCAACCGAAATTGACGGTGCAAAACTGGTTTCGTTTTTACCCGAGAAAAGGGAAGACGTTCCTTAAAAATTTGGTAAAATTCAGAGTCCTTTTTTATCGCTGATATTTCAGCGAGATAGAAGAAGT # Right flank : CTAATCCCAGCATTTCATGCCAAATCGGCTATCAGTAAGCTTTATCCTGTGACGAACATGTGCTATTAAGCGCCGTATTTTATGTGCCATAAGCATTGTTATCGTGCGGCATGATTCAGTTGGTACTTTCTCAGGCATTCCTTTCGTTTTGCAAACACAAATCCCAATACGGTGATCCTTCAAATCGCTTGATTAAAAAATCGACAAAAGCTCTGACACGCCGGGAAAGATGGCGTGTTTGTGGATAAATGGCATAAGCTTCTAACTGTGAATAGCGATATTCAGTCAACAGCGGGATCAATTGGCCGCTTTCAATTTCTTTATAAACGATGAATGTCGGCATCAGCACAATACCCATCCCAGCAGCAGCGGCATCCCGAAGGAATTCACCATTGTTGGCTTTCAAATAAGGAACTATCCTGGTTTTGATCAATTGTCCATCGGCATCATACAAATTCCAGGTATCAAAATTACTGATCAGGTTGTAAACCAAACAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7471-5214 **** Predicted by CRISPRDetect 2.4 *** >NZ_FONE01000007.1 Nitrosomonas sp. Nm166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 7470 37 100.0 35 ..................................... CGGTGAGCGTTGTTTTGTTGAGGTTGACGAATGGC 7398 37 100.0 36 ..................................... TTCAACAATCGCCTTTACAGTAGATGTTGTGCTGGT 7325 37 100.0 34 ..................................... GATAATTGAGCATTGTATTCATCAGTTATTTTAT 7254 37 100.0 36 ..................................... ACGGGATCGGTAAGCATCATAGAATCATCAGCCGAA 7181 37 100.0 34 ..................................... AATACTCAAATAAGAAAAAAATATCATATAAGGT 7110 37 100.0 35 ..................................... ACGGAAGTGGTAAGAGCGCAGCAGCCATAGCAAGG 7038 37 100.0 34 ..................................... TCGTTTTTCATTAGCTGCCAAACTTCATCGGCTT 6967 37 100.0 34 ..................................... ACTTGTTGGGCGGCCATCAAAGAATGGCTGTAAT 6896 37 100.0 34 ..................................... CCCGGAAACGCTATCAGGAAAAAGCGCTTTTGGG 6825 37 100.0 35 ..................................... CATTGCTGCGAGCGCAAAATGAGAACCACTTCCGA 6753 37 100.0 34 ..................................... ATCAATCTGCAGTGGTTGCCAAAAACCATCAAGA 6682 37 100.0 35 ..................................... TTTCCAATGCAACGGTAATGTGGAATGAGCAGGAA 6610 37 100.0 34 ..................................... CCAGTTACACGTAGTTTTCGTGAATTAGGGGTAG 6539 37 100.0 35 ..................................... TACAGTGCTCACGAATCCAGTTAACCCTGCTGTTA 6467 37 100.0 36 ..................................... TGAAATTAAAGCTTGATGAGCAAGGGCATGTGGTAG 6394 37 100.0 34 ..................................... TTGAGTTTGTTTGTGTATAGGAGATTTTTAAAAT 6323 37 100.0 35 ..................................... AGATTATCCTGAGTACGGTTCAAATCGGCATACTT 6251 37 100.0 35 ..................................... AGCAAAGAAGACGAATTTAGCTTGCTCTGTTACAA 6179 37 100.0 35 ..................................... TACAGTAAATTTAGAAATTGAAGCAATTATTTTAG 6107 37 100.0 34 ..................................... TGTAATATACGAATTGAACGTCCATTTTTAGTTT 6036 37 100.0 34 ..................................... TAATGTCAAACAATATATCAGCGTTCAGATTAAT 5965 37 100.0 35 ..................................... ATGGTATCGAGGCTGGTAATGGTATCGAGGCTGGT 5893 37 100.0 34 ..................................... TTGTATAAGCGCGACAGTCAAAGGCAATGGCAGA 5822 37 100.0 34 ..................................... CTGTATACCAAGCGGAGGCCAGATAATGACTAGA 5751 37 100.0 35 ..................................... TCAAATTCGCGGGGTTAAAAATTGATAAAAATAAT 5679 37 100.0 35 ..................................... AGATTCACGCATTGCGGATTAGAAGAACCTGTCGC 5607 37 100.0 35 ..................................... TGTTCAATGAAATGGCAGGATATCAATTTTGAACG 5535 37 100.0 34 ..................................... AACAGTAATCTGGGAAACCCGGTAACAGACACAA 5464 37 100.0 34 ..................................... TTATTGGTCACTTCTGCAAATCCTTTGATATCTC 5393 37 100.0 34 ..................................... CTCTCTACAATCAGCAATACAAGGAATAACGACA 5322 37 100.0 35 ..................................... ATATTAGTTTTTACCCATGCCGCATCTGTTAAATC 5250 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 32 37 100.0 35 GTAGCGCCCGGCCATACTGCCGGGCGAGGATTGAAAC # Left flank : CGGATACATCCCTTTTCTGGTGAAATAATTATGTTGATTATTGTGACGTATGATGTTTCAACAGAAACCAAGGAAGGCCGCAAAAGATTGCGGCGCATTGCCAAAATATGCGAAGGAATCGGGCAACGCGTTCAGAAGTCGGTGTTTGAGTGCAAAGTCAGTCTGATGCAATACGAAGAACTGGAGCGCAGATTGCTGGCAGAAATTGACGAGAAAGAAGACAATCTCCGGCTGTATCGTTTGACGGAGCCAGTCGATTTGCACGTCAAGGAGTACGGAAAATTCAAAGCCATCGATTTTGATGGATCACTGATTGCTTAAATGCGCGAATCACAAGCAACCACAAAATCCCGGTCAGTTCGCGGAGTTTATAACAAGTTGAATATATAGAATATTTCATTGATCATGTTCATAATCCCATCACAAAGTTGCCTCCATAATCATCAGTCCGCGCATTTACAAAAAATTTCTTTGTTGTATGATCAAGTTGCAGCTGTACT # Right flank : TGAGAATGGTAGCTCGAATTTGAATGTGACATAGCCTTTCTATAGCCTAGGCCTTACCCCTGGGTTTTCTTGCATACCTTCGGCTCTGAATAGCTTGCTAATCATCAGTCTTCTTTGATTTCAGGATCGACACTGCAGTTTGATATTTCTCATCTGTTTCTTCAATAAAAGAACCATCAAACATGATCCCTTTCTTTTCTAATAAATTGTTATAAGCTACTTCAAGGCAATCAAGCACGGAATAATTAAAAACCCTGGCTAAGGCAGCCAAATAAATAAACAAATAACCCATGTTGGCTTTAATATCTTCACGCATTAATATATTTCTATTCAGTCCTCCCAGGTATTGAGTTGCCGTCATCATCACGAACCTACGGTTAACTATTCGCTTATCAGTTATCGCTTCAGCGTTGATAACACAGTCATTCAGATTAATATTTCGCATTCGGCAGATTATTACCATTTGAATTACGCACTTGCCTATACCATCGCGGCAGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGCCATACTGCCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.20,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //