Array 1 1170605-1169371 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN907867.1 Blastochloris viridis isolate 1 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1170604 37 100.0 37 ..................................... CTTCCAATCGACTTGCCGGCATCAAGCGATACGCTGC 1170530 37 100.0 39 ..................................... ATCCGCAACTGGGAAAACGTCAAGGCAGTGGTGGGCGGC 1170454 37 100.0 38 ..................................... CTAGGTGACCTGTCCAACACACCAAAGCTACCAGACCA 1170379 37 100.0 38 ..................................... GGCGTTTGGGACAAGGGGTGGAACGCGGCGGCCGAGAA 1170304 37 100.0 37 ..................................... GACCACCTATCAACGGCCATTGAGCGGCTCATAAGCA 1170230 37 100.0 39 ..................................... GCTTGTCAGGCTCAGTATTCAACAAGCCAACGCGTGTTA 1170154 37 100.0 41 ..................................... TTGGAACTGAATTGGGATGGACATGGCCAGGGTCGGTCACG 1170076 37 100.0 36 ..................................... CTCGACACCGGCGAGCTGATTACAGCGCCGCTGGCG 1170003 37 100.0 38 ..................................... ACGCCACGACCGAAGGCTGGCTTTGCGGATGCACAGAC 1169928 37 100.0 37 ..................................... CAGAAGGTCGTGTGACGCCGACCGCTGAAGATGCGGC 1169854 37 100.0 41 ..................................... GCGCCCCCCAGCACCGCGGTCGCCTCGGCCGAGGCCAGGGA 1169776 37 100.0 36 ..................................... GGCGTGCGCGGCCGGCGGGCGTCCGAGGTGACGGCG 1169703 37 100.0 39 ..................................... CAACTCACCCTCGACAACGGATTTTCGCTCACCGCGCCT 1169627 37 100.0 35 ..................................... AGCGTCAGCTCCACCGCCTTGTTGAGGGTCTTGAT 1169555 37 100.0 36 ..................................... CCGGCGCTGCCGGACGGCGCGGAGGTGCTGCACCGG 1169482 37 100.0 37 ..................................... GCGGCGACATCGTCGGTGCGGGCGCGGCTCTATCGCG 1169408 36 81.1 0 ....................G..T...-.GG...C.G | AC [1169383] ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 98.9 38 GTATTCCCCGAGTAATCCGCTCGGGCCTCATTGAAGC # Left flank : GAAATAAAGTACGATAACCAAAACCATGAAAGTGTCAGATCTGATGCAACCAGATCGGAAAAATACTCTAAATTTGAAATTATTATCCCTATATGTCCTCACGTCCAATCAGACTCCTGGGAGGACGCCCCCCCCGAAAACCCTGAGTTCAAGCAGGAATTTTCGGCGATGCCGGTTTCAAGACTGCGGATGGACCTTCCGGACCTCGCCTGAGAAGAATCTCGTCTCGTCCGGCAGTCACTCGGATCTGCGATCCCCGCTGTCACAATCGTCGGCGCTGACCCCGCGTTCGGAACGTGCCGCCTTACGGCGCGAGCGCTGCCGTGATATGCATTTCTCCCGTAAGCGCTCGCAGCTGTTTAGATCCTTGAATTTGAAGGGCTGTTTGCCAATGTGAAATACGTTCATGCCTTGTCGCACGTTGCGAGGCGAGACCGTTGACGCAGCTCTCGCAAGTACCTGTCTATTCTCCTGCGTAATCGAGCAAAAATCTGGCAGGG # Right flank : CGCTGGGCTTCATCGCGACGGTCAACGTGACGCGCAAGCTGGGCGTGATCCTGCACGCGATATGGCACGCAGCACCTGCTACGTCCGCGACCCGATCGTCTCGCGGCGGCTGCGGCTGTGCCGTCACCCGTTCGATCCGGCCGATACGTCCGCCGCGCCGGACCGATCCGTGCCGCCGCCGTCTCGGCCACGCTTGAACGGCCAAATCCCGCCCTACAACGGCAAGGGCCGGGTGCGCTGCTTCGCGGCAGGCGCAGCCGCGGAGGCGAGGATGCCGTTCATCGAGCCTAAGCCCATCGCCGAATACCCCTGGTACCTGCGGCTGTTCTTCCGCAACCAGGTCCGCCGCTACGGCCAGGTGCTGTCGCCGTCCTGGCTGTGGGGGCGGCTGCCCGGCCATTTCCTCGGCCTTCTGATCCTGCTTGGCCTGTTCCAGCGCCGCGCCTTCCCGATCGACACCGCGCTGCGCAGCGCGCTGTCGGTGCGGGTGGCGCAGATCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGAGTAATCCGCTCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 1694695-1696151 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN907867.1 Blastochloris viridis isolate 1 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1694695 36 100.0 37 .................................... CCTGCGCGCCCTCTCCCGTGCCGATCCTGGATAGGTG 1694768 36 100.0 37 .................................... CGGATCGACGCTGAAGCCCCAATCGGCGCCGAACAAG 1694841 36 100.0 38 .................................... GCTCCAGGTAATGCGCCAGCACCTCGCCGATATCGGCC 1694915 36 100.0 42 .................................... AACGAGATGGCCGACCGCAACGACATCCGGGCCATCACGCGC 1694993 36 100.0 39 .................................... GGCGGTCGCCCACGTCATGCAGGAGGGCTGACCATGGCC 1695068 36 100.0 39 .................................... TTGCGCTGCCAACCCGCGCGACCATGGGGCAGTGGTACC 1695143 36 100.0 38 .................................... CGCCCGTCCCGGTCGCGGCGGCTCACGAGTACGCAGAG 1695217 36 100.0 37 .................................... GATCAAGCCGCGCAAGGACAAGACGACGCCTCAGCTG 1695290 36 100.0 39 .................................... CTCCCGATCAGTCGTCACGCTGTCATCGCGCATATTGGG 1695365 36 100.0 37 .................................... GGTGCGGCTGTCGGAGACCATCGAGACCACCTGGGCG 1695438 36 100.0 40 .................................... CCCGGATCATGTAGGCCCCGGTGTATACCTTGTTCCCGGG 1695514 36 100.0 38 .................................... CCACCCATTTAACGGGGGCACCAAACAGCCAGTGGTCG 1695588 36 100.0 38 .................................... CCAGGATGTCGGACCCGAGCTGGGTGCCGATGGCCACG 1695662 36 100.0 40 .................................... CGCGGTGGACACCGGCGTCACGACGCGGCGCGCGCTCCAG 1695738 36 100.0 39 .................................... CAAGCCCGCTGCGTGACGCCTCCCTGCTGGTGGTGGACG 1695813 36 100.0 41 .................................... CCTGCCGGGCGACGCGGATTGCCGCGGCGCGCAGTGCCGTG 1695890 36 100.0 39 .................................... CCGCGGCCGGGGTAGGCGTCGGTGCCCACCAGGAAGCGG 1695965 36 100.0 38 .................................... CATCGAGATGGCGACGGCTCATCTGACCGATGACGAGG 1696039 36 100.0 41 .................................... CCGTCTCGACGCGAGTGAGCGGCTTGAAGCTGATGGAGGCG 1696116 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 20 36 100.0 39 CTTCAATGAGGCCCGAGCGTGCTGCTCGGGAAAGGC # Left flank : CGTCGGCCAGGCTGCGCGTCCGGCGCGCCCATTTCGGCAGCAGCGCCGAGCTGAACCGGATTTTCTGCGCCGCCGGCACGTCCAAGCGGTCACGAACTTTCGCACGCTGAACCGCCACCGGCCCGATGCCGGTCTGGATCAGCCGCTCCGGGCCGTGCCCGTGCCGCACCATGCGGTCACGGCCGTCGGCCAGCTTCTCGGTCTTCAGGTCGCCCAGGAAGGCCGCAACCTCAGCCTCGATCGCCTGGGCCAAAAGCTGCCGCGCACCCGCGCGCAGCACCTCGGTCAGGGGATCGTCGATCTCGCCGGGCTGACGCAGCCGGACGACGGTGATAGTTTCACTCATGGCGTATCGCTCTCCTCTGGAGGGGTTGGGCAGGCTGGTTACCCGCCCCGATACGCCGCCTCTCTCACACCGTCATCACCCAGTTCCGGCCATAGCTCCGTGCTGCTCGGGAAAGGCTTGTCGGTTGCGGCGTGCAGAAGCCGCATCCCCACAG # Right flank : CCCGCCCCCGCCATTTCCGAAGATCGTTCCGGGGCTTGCCGTGCGGGATGCGAGCGGTGCTGCCGGTCGCGTTGGCCGGACCGCGACGAAGCATGTTCGAACGTCTTTACGATGTCAAATAGCGTCGTGGCTACCGCGACTTGCGCCGATGCGAGCGCTGCCGCACAAATCTGCCTCGCCGCAGCGCTCGCGTCCAGGCCAGGCCATCGCCAGGACGCGATCATCGCCCTGCCGGCGGGTCGGGCCGCGCGGTCATGCGGTTTTCGGATGATCCGCTCGGCCCCTTTTTTCCGCTTTCCCACCCGGCCAGGCTTGCCTGCGTCCGGGCGCAGGCTGTTGTGGGAGAGGATGCCGAGCAATCGAAGATCGTGAGGCGGGTAAAACCGAGCCGGCTTGAAAAGCTCACCCGGCGCGGATTTCGCTTCGCTCATCCTCGCCGACCTCTCCCGCAAGGGGAGAGGGAAAAGGAAGAAGAGACCGAACTGACCAGCCGCAAAACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGAGGCCCGAGCGTGCTGCTCGGGAAAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 1860326-1863725 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN907867.1 Blastochloris viridis isolate 1 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1860326 32 100.0 33 ................................ AGCCGGCGGATGTCGCACTCGATGTCGGAAAGC 1860391 32 100.0 34 ................................ GACGGTGCCGTCAGACTGTTGCGTCATCGATAGG 1860457 32 100.0 33 ................................ CGCGCCCGCGCCAGGCAGTTGCGTGACGAGCTC 1860522 32 100.0 34 ................................ GCCCGGTACATGAAAGAGGCCATCAGCAACGGTG 1860588 32 100.0 34 ................................ CGATTGCCGCCGCGCCGGTGGTGGTGCACGGCCA 1860654 32 100.0 32 ................................ AACAGCGTCGTGGGTCTTGACCGTGGCATAGC 1860718 32 100.0 34 ................................ CGGGAGCACATTCAGCACGAGGTGCTGGTCGACA 1860784 32 100.0 34 ................................ ATGCCCCAGCCGAATTTCTCGTTCTGGGTATCGG 1860850 32 100.0 35 ................................ GGACTCGGCGCGGTCGACTGGGCCACAGCCGAGCC 1860917 32 100.0 36 ................................ CCCGGCTACTACTTCGTCCGGCTCGACCTCGCCGAC 1860985 32 100.0 34 ................................ AAAAACCGCGGTGACATTTTTCGCGTGGTCGAGG 1861051 32 100.0 35 ................................ ACCTCGGCGATCTCGACCTTGGCGACCTCGGCCTC 1861118 32 100.0 33 ................................ GCCATGCCTCGCCGTCTCGGCGGTTTTGGTCGT 1861183 32 100.0 34 ................................ ATCTCGACCAGATCGAGCTTACCGTCCTCGCCGA 1861249 32 100.0 33 ................................ ATTGCCATGATCGTGTTCCTTAAGCGGTGCCAG 1861314 32 100.0 34 ................................ TTGGGGGCCTTGGGGCCGGTCCCCGTGAAGATGC 1861380 32 100.0 35 ................................ TCGTTGCTCCGGCTCGACATCGCCGATCCGCGATG 1861447 32 100.0 35 ................................ CAGCATAGGGCCGGTCAGGTTGACCCCGGCGAGGG 1861514 32 100.0 33 ................................ ACCTCCGAGACCTTCGCGAAGGGCGCCGCCTAT 1861579 32 100.0 33 ................................ ATCTACCACGCGCTGACACGGTCACCTGCGATC 1861644 32 100.0 34 ................................ TCGATCTCCGCCCGCCAGTGGGCATCGCGCTCCG 1861710 32 100.0 34 ................................ TCGATGATGCCGATCGGCGGGTGCTATTTTGTGC 1861776 32 100.0 35 ................................ CGCGTCGGCCGCACGGCCTGATCGATTTCGTCGGC 1861843 32 100.0 35 ................................ CTCCTCACCGCACCCGAGATGGCGCAGCACGACGC 1861910 32 100.0 34 ................................ GACGGCAAATCGAACAGCAGCAACGCGCGGTCGG 1861976 32 100.0 35 ................................ CCCTTGGCCGGCGCCCAGGCCGCCTTCCGGCGCGC 1862043 32 100.0 34 ................................ CGGTGTCGCTCGCTGACCCGGTCGGCGTCACCAA 1862109 32 100.0 34 ................................ GGCGACCGCCAGCCCGGTCAGCGGCTTGCATGGC 1862175 32 100.0 34 ................................ GTCGTCGCTGTCGCCATCGGCGATGACGCGGATC 1862241 32 100.0 35 ................................ CGCACGAAGCGGTCACGCGTCACCCGCTCGGCCAC 1862308 32 100.0 34 ................................ CTGGTCAATTCGTCGTCGTCCTGGTGGCGGTCGG 1862374 32 100.0 35 ................................ GGTTTCAAATTTGCGCGACATCGTGGCCCCCGGCC 1862441 32 100.0 35 ................................ AGACTGCCGAGAAGTATGCCGGGCGTGGAGACGGT 1862508 32 100.0 36 ................................ TATGAGCGACTGCACGCCAAGTGCGATAACACTACC 1862576 32 100.0 34 ................................ ACGTTCTCCCAATTGCGCACGATCAGCGCCGCGC 1862642 32 100.0 32 ................................ CTCGCCGCGCCAATCAAACTCCTCCGCTTGAA 1862706 32 100.0 34 ................................ GGCGTAGACCTGCGACACCTTGGTCACCTGTACC 1862772 32 100.0 34 ................................ GGTACAAGCCGGTGCGGCTGCTCTGGCCAAATGG 1862838 32 100.0 36 ................................ TTTGATTGCGATCGCCACCCCGCGCTTGGCCGCCAG 1862906 32 100.0 34 ................................ TGCTGACCGGCTCAGCACGCTCAAGAGCGTTCTG 1862972 32 100.0 33 ................................ CGCGCATGCATCGAGATAGCCTCGGCGTCGTGA 1863037 32 100.0 32 ................................ GATCCGTGACATGCCCCGACAATAATGGGCAA 1863101 32 100.0 35 ................................ GAAGTCGAGCCCGCCGTCGTCATCGCCGCGGCAGC 1863168 32 100.0 33 ................................ CGCCGCCATGGTGTCGTCGCGCGCTGGCCTGGG 1863233 32 100.0 33 ................................ AGCGCCAGCACATAGGCGCCGCTCTCGCGCCGG 1863298 32 100.0 35 ................................ GTCGTCCTCGCCAGCATTTGCAGCTGGGGTGCTTG 1863365 32 100.0 36 ................................ CCTAGAGAGAGATTTGGGGGTCAAGAACAGCAAGCG 1863433 32 100.0 35 ................................ CGGTCGCGGACGGCCTTGGGATCCTCGACGATACC 1863500 32 100.0 34 ................................ ACCTCACGCGCTCCGGCGCCTCGGGTGATCGAGC 1863566 32 100.0 34 ................................ GACAGCCCGTCACGGGCCGCGACCGCCCGAACCT 1863632 31 96.9 32 ............-................... AGGAAGCCGCCCGCCACCTGGCGGGCGCTCGT 1863695 31 96.9 0 ....-........................... | ========== ====== ====== ====== ================================ ==================================== ================== 52 32 99.9 34 GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Left flank : GTTCTGGTCACCTACGACGTCCGGACGTCCGATGCCGGCGGGACAAAACGTCTGCGCCGGGTGGCGAAGGCCTGCCGCGACTATGGACAGCGCGTGCAGTATTCGGTGTTCGAGATCGAGGTCGACCCGGCGCAGTGGGCAGCGCTCCGCGCGAGGCTGGAGGCGGTGATCGACCCGGCCCATGATAGCCTGCGCTATTATCATCTTGGCGCCAACGGGCAGCGCCGGGTGGAGCATGTCGGCGCCAAGCCCAACCTTGATCTCGACGGACCGCTGATCGTCTGAGCGGCGCGTCGAGGTTTCGGCGGCCCGGCGGCACGGTGCGCGAACCACAAGCGTGACCGCGCCCGGCGACACGTTCGCGCCAGTCCTAATAACCTGAAATTGCTATCGAAACATGGAAATTGGCGACACGTGCGGTCGCCGGGCGACCTCGCGCACCGAGGTTCGCGCATCCATGACCGTTTCGAACGTCAGGTTCGTGCGCTATCTGTAGGGCC # Right flank : CATGTCCAGCGAAGCGCGTTCTCAACCGTTCGCGACAAACGGTTTCATGATGGCGCCGCCTTCCTCAAGACCGAGAGCGGCTTCTGTGTCCTGCTGGTCAAGGCGCGCGGTCACCGGGACGCCGCCACCGTGGTCGGCCACACCGGGACGATTTCATCCGGCGAGCGGATTGCTTCACCGAGGCAGAATTCCGCGCGTGAACAAGCCGATGCAGCTGCGAAGATAGCGGATGCGCTCCTGGCGGTCCGGCCACTCAGGATCGCAGCCTTGAAGTTTCAAGGCCACCGCCCCGAACATCAGGTCCATGAGGGCCTTGGCTGCGACATTGGCATCGGCCACATCGATACGGCCGCGCATCCTCTGCATCTCCAGCCATCTGGCGAGGTCCTCGCGCGATCGTTCACCGCCGCGCTCCCGCAGCAGCGCGCGCAGTTCGGGGAACTCCCGCGCCTCGACGACAACGAAGCGGATCAGAGCCATCCGCTCGCGATCGGCCTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //