Array 1 920976-919752 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020420.2 Neisseria meningitidis strain FDAARGOS_209 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 920975 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 920909 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 920843 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 920777 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 920711 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 920645 36 100.0 30 .................................... ATGCCTTTTTTTGTACTGTTGTTTGAACGA 920579 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 920513 36 100.0 30 .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 920447 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 920381 36 100.0 30 .................................... GGGTAGCCAGTGCTAAAACCGCACCCGCTT 920315 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 920249 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 920183 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 920117 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 920051 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 919985 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 919919 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 919853 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 919787 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //