Array 1 27379-27809 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRUY01000001.1 Phocaeicola plebeius strain AF24-16AC AF24-16AC.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 27379 47 100.0 30 ............................................... TACGAGGAATAGGCAGTTTAGCTGACATAT 27456 47 100.0 30 ............................................... TTTTATCTGGTACTGTAGCTGCTGGTGATG 27533 47 100.0 30 ............................................... TACGCGGGATTGGTAACTTAGCTGACATAT 27610 47 100.0 29 ............................................... TTCTTTTTTCTGTTCGTCATAACTTTTCT 27686 47 100.0 30 ............................................... TGTACAGAACGGTCTGAGACTGCCAGCTTT 27763 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCACTGGAAACAAC # Left flank : GGCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTAGGTTTTTGGATTGGCGGTGCGAACGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACGGCCCGCACACCTCAGCAGTTGAAGCAGTTCATGTGGAAAACTGTAGACGGAAGTGATGAGAATCTGGTGCTGTATTATCCACTAAACGGAAAGAAGCGCAACCTTGACACGGGAGAAATCACCGAGGATGAAACCATGCTTTGGGATTTCAGTAACAATGCCAAACATCTGCCTCTTCCTTCAGGGGCTAAGTTTGCTGATAATGACGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGGCTGTCTCAAACACTCTGGTGTGGAGGCAGCTTTTTATGTGTTATTATAGGGACAAATGATATTTAAATATAGAAAAACTTTTAGTATCTTTAAACAACGGGAAACAACTATCACTCCAAGAGCTCCCGTCTTCTTGT # Right flank : CTCGTTGATTGTTTTATATTGTTTATCAGTAGGTTATAAGAAAATTTAGAAAAAGAAAAAGTTGTTTCTTGAAATAATAAATCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTACCCCACTTGCTTTCTTGCCATAAAATAGCTCAATTTCTCCAAACTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGATTTTACTCTTTTTATATGCACAGCTGCATTTTCACTGCTTGCACAATGGCGTACATAGATGGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTTGCGAAAGTCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAAGTCAAAAAGAACTAAAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAAAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCACTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.35%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //