Array 1 170691-170483 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQES01000025.1 Pasteurella multocida strain 2633PM isolate swab isolate 1 contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 170690 28 100.0 32 ............................ TATTAGTAAGTTAATTGCTTAACTTGTTGTTT 170630 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 170570 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 170510 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94389-91299 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQES01000021.1 Pasteurella multocida strain 2633PM isolate swab isolate 1 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94388 28 100.0 32 ............................ GTCAGAGCTATGCTGTTTGTAACTACGGAAGA 94328 28 100.0 32 ............................ GTCGTTCATGATTGTTGACTTTGTGTTATCAG 94268 28 100.0 32 ............................ ACATTAGAGAGGGTATGCAGTATAACCCTCAA 94208 28 100.0 32 ............................ ATCAGTCTTTTTAACTTGTCAACAATTATTTT 94148 28 100.0 32 ............................ ATCGTTCATGATTGTTGACTTTGTGTTATCAG 94088 28 100.0 32 ............................ ACCACAAGCGTACTTGAGTCTTGTTGAATGGC 94028 28 100.0 32 ............................ TTTTAGACCCTTATATGTTGGTTCGCCAAGAA 93968 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 93908 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 93847 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 93787 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 93727 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 93667 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 93607 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93547 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93486 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93426 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93366 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93306 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93246 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93186 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93126 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93066 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 93006 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92946 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92886 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92826 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92766 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92706 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92646 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92586 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92526 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92466 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92406 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92346 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92286 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92226 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92166 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92105 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92045 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 91985 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91925 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91865 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91805 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91745 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91685 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91625 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91565 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91505 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91445 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91385 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91325 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //