Array 1 14934-6091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPN01000138.1 Methanosarcina mazei strain 3.H.A.1A.2 scaffold45_1_size30457-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 14933 37 100.0 37 ..................................... AGTTATAAATTATTCCGTCTGTGTTGTGGTAGCCCCG 14859 37 100.0 35 ..................................... AGCATTTCGATTAATGCAAGTGCTACATAACAAAG 14787 37 100.0 35 ..................................... GGAGGTATAGGATGGCATCCGAAGAAAAAGAGTTC 14715 37 100.0 34 ..................................... TATACAGGTTTTTATAATGTGGTATATGTAAGTT 14644 37 100.0 36 ..................................... AACACTTTTTTAGCAGAACTGTAAACCTTAGTTGCT 14571 37 100.0 36 ..................................... TACAATTACGTCCTTACACAGTTCAACAACGTAAGA 14498 37 100.0 35 ..................................... TTTTCACCGCTTTTTAAAGACCACTTTCTTGTACC 14426 37 100.0 38 ..................................... GTATGTTACTCGCATCACCTTGCGAGATTTTTTCTAAG 14351 37 100.0 35 ..................................... CTGCGTAGTTGGTGAGGAATAATGGTCGGCATAGA 14279 37 100.0 35 ..................................... TAGAAAATCAGGAAGTAGAGCCATTACCAAAAATC 14207 37 100.0 37 ..................................... TCACTTGAGACCATAACTTTGTTTGAGGTCCCCGCGT 14133 37 100.0 35 ..................................... CTGGATTCATAGTGTCTTTAAAAACATGTACATAA 14061 37 100.0 36 ..................................... TTCGATTATTCCAGGCTTCTATATTTTGACTTTCGA 13988 37 100.0 36 ..................................... ATTAGTAACAGTAAAGCATATAGTATGTTAAAATTA 13915 37 100.0 37 ..................................... TTAAGAGTATATTTATTACCGATTTCCGGATATATGC 13841 37 100.0 37 ..................................... ATTTTTGCGATAATACCATGCTGTCCTGAATCGAATT 13767 37 100.0 33 ..................................... ATCAGTTCCCGGTTCATCTCAGAATTCAGTATC 13697 37 100.0 35 ..................................... AACGTGTTCACCACGAATTAGCTGACCAATATGAA 13625 37 100.0 36 ..................................... TAATAAAGTTGCATGTCATCTACCTTATGTATTTCA 13552 37 100.0 37 ..................................... CTTTTAGGAGTGTTTATATGAAATGGCATTCTATTAT 13478 37 100.0 34 ..................................... TTCCAATGCCCGCAGATTCCGTTGCATATGTAAT 13407 37 100.0 36 ..................................... ATCCCCGTTCCGGCATGGATTAGGGATGAGCTTAAT 13334 37 100.0 36 ..................................... CACTGTTGCAGAAGGTGGAGCAAGCGACATTGTAGC 13261 37 100.0 35 ..................................... TATTCTTGTAAACCATGTTTGTATTACTCCATTGC 13189 37 100.0 34 ..................................... TCCATTCCAACCAGCATCAGTTAAACATATTATG 13118 37 100.0 37 ..................................... AGTATTAAAAAGGCATTATTAGAAAATTGAAGTTCAA 13044 37 100.0 38 ..................................... TTAAAATCCCTTGTAAACTCGTCAATATCTGATACAAT 12969 37 100.0 35 ..................................... AACAAGAACTTAACAGCATCAGAAGACAGCTTAAA 12897 37 100.0 35 ..................................... TCTGAGACTCATTATAAAACCCAAATGCGAATTTT 12825 37 100.0 33 ..................................... CTCGTACCTTATAAATCCCAAAATCAATATTTT 12755 37 100.0 36 ..................................... CATTTCCAACGGCGTATTAATTTTTTCATGTATGTG 12682 37 100.0 37 ..................................... CCTCAAACTTAAACTCATCCAACCTTCTCCACCACTA 12608 37 100.0 37 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATAGCT 12534 37 100.0 35 ..................................... TTTGCGTAGATCTTGAATCGTTCACAGTCAATAGT 12462 37 100.0 36 ..................................... AAAAGTCAGTCCCGGCCAGCCTATGCGCTAAGACTT 12389 37 100.0 35 ..................................... CAGAGTTGTAAGTTACCCCGGAGGTTGCAACTGCC 12317 37 100.0 36 ..................................... TGGTTGATGTATGCGGTTCTGCCGGGAACATAATAA 12244 37 100.0 38 ..................................... AGGCGGAACCATATTCGGAAAAACTCCCCTTGTCAATG 12169 37 100.0 35 ..................................... TCAACCATTAAGGACAATCTAATAAACGGATTAGC 12097 37 100.0 37 ..................................... TACCGTTCATGGTATCGGACATATCAAAGCCAGCAAG 12023 37 100.0 34 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGA 11952 37 100.0 36 ..................................... CTATTGTGAACCCCCGCAGACCTAAGAGGATTTTCA 11879 37 100.0 37 ..................................... TTTCCACAATCAACATACCCCGTAAGCCCATCAAACT 11805 37 100.0 34 ..................................... TACTCAGAGCGACTGATTCAATGAGAGGAGACCC 11734 37 100.0 34 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAAT 11663 37 100.0 35 ..................................... TGCCCGCGTAGGTAGTCGAAAGACTGAAAGCCCCG 11591 37 100.0 40 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGATGAAAT 11514 37 100.0 36 ..................................... TCCTTGAACCATCTAGCACCTGATACGGCTAGATGA 11441 37 100.0 39 ..................................... TTATATTGTCCTTAATGGTTGATAACATCCCGGTGAACG 11365 37 100.0 34 ..................................... CTAATTCCGTTTCATCAAAATTAGAGGGAGCCGT 11294 37 100.0 34 ..................................... TCACAATCGAAACTCTCACAAAAGAACATGCGTT 11223 37 100.0 35 ..................................... TATACTTATAGGTAATTACCTATAAGTATGTGCGA 11151 37 100.0 35 ..................................... TCAATTATACAGGCGACCTAGGTTCACAGCTAACG 11079 37 100.0 35 ..................................... CAAATGTCTGCATAGGCTCCGACATGCCCGCAAAA 11007 37 100.0 37 ..................................... ATCAATCAGTTCTCAATTCAGACCGGCTTACGATTGC 10933 37 100.0 36 ..................................... TGCCGAATTCTTTCATTCTTTCAAATTCGCCCTGCT 10860 37 100.0 46 ..................................... CCCTTGTTTACTGTGCTATAAAACGTAAGCGGTAAGCTTCCAGAGG 10777 37 100.0 37 ..................................... AATAATAGATATTCTTTAGTGTCTCATCTGACACGCC 10703 37 100.0 34 ..................................... TTTTCCTCTCTCTTTTTTCGCCTCTCTTCTTTCT 10632 37 100.0 34 ..................................... TACGTTGCCTGCAGCGAGGAAGTCGCCGGAGCCT 10561 37 100.0 35 ..................................... CTCATAACGGTTGTGCGTAAAGAGTACAAAACCGA 10489 37 100.0 33 ..................................... TCTTAGTAATGCTCGCAGGAGTCGGTGGTGCAC 10419 37 100.0 35 ..................................... TACGAAGTCGTATTCGCACAAATTAGCGACTAAAA 10347 37 100.0 35 ..................................... AAACGAACGCTAAAACTAAAACTAAAGCTAATTAA 10275 37 100.0 33 ..................................... CCTTCGGGCGTCCCTGCAGTATGCCAGTAATTA 10205 37 100.0 35 ..................................... ACGACTGCTGTAAGTCCTGGTCTAAATACTGGATC 10133 37 100.0 35 ..................................... ATGGGGTTTATTCTTTGCTTTTCAATCTGTCCTTT 10061 37 100.0 37 ..................................... TTTAATACCTGGGCAGTGTTTTCAGGCCCTTGTTTTT 9987 37 100.0 34 ..................................... AAGCTTTTGAGGGCTCAGCGACAACGACAGCTAC 9916 37 100.0 37 ..................................... TCCATTTTATTAGTCGCTTTTCCTGCTGGAATCCTTC 9842 37 100.0 34 ..................................... TTCATGGGGAGTTTCACAGCTGGCTGTGTAGGAG 9771 37 100.0 38 ..................................... ACTCCTTTAAGAGCTTCACAAGCGCAATCTCTAGCTCC 9696 37 100.0 35 ..................................... TTATCGCTCGCAGGTCTTCCTCTTCTTCCTGTTGT 9624 37 100.0 35 ..................................... CACAGTTGTCCAGCCTTACACAGTCTGAAGTAATC 9552 37 100.0 38 ..................................... AGTCTTGTACTCTGGGCAGCCTTTTGACCTGCGGTAAT 9477 37 100.0 36 ..................................... TTTATATTTGGTATCCGCTTTAGAGGTCTCCGTTTT 9404 37 100.0 36 ..................................... TTATTCCCTTCCTGGAAATTCCAGGGAGAAATAGAG 9331 37 100.0 37 ..................................... TAAAGTTATTGTTGATATACATGCAGAGAAAAACCGT 9257 37 100.0 34 ..................................... CCTACAATTCCTATGAAAACTAAGAAAGAAACGG 9186 37 100.0 35 ..................................... TAACCTCGGCAGATGGTGGAGAGACATGGATTGAG 9114 37 100.0 34 ..................................... ACGTCAGGTCTTACAGGGTCTTCAATCCCCACGT 9043 37 100.0 35 ..................................... TATATAACTTTGCATTCTATAAGAATTAAAAAAGA 8971 37 100.0 35 ..................................... TATTCTACCGTTGAAACATGCCGGATCAATGGGGT 8899 37 100.0 37 ..................................... GCAATAATCGTAGTGAGGAAAACAGGTGAAAGGTTAG 8825 37 100.0 36 ..................................... AAAAACGTGTCGTTGAAAATGTCCGGTTCAAATGAA 8752 37 100.0 37 ..................................... TTGCCCGCTTGTCGGCGTTGCTGAGTTCTTTGTACTC 8678 37 100.0 37 ..................................... ACGATAATGCTATCCCTGTTTTGAAAGAAACTATTTT 8604 37 100.0 37 ..................................... TATACTATATCCGTGACTATAGTATTGTATGACAGAA 8530 37 100.0 37 ..................................... TCGCTCTTTCTCTTTTCAGCAAATCATTAACAAGCGT 8456 37 100.0 37 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGTC 8382 37 100.0 33 ..................................... GTTCCCTGCTGTAGTATGAGCCGAAATTGGGAG 8312 37 100.0 36 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGT 8239 37 100.0 35 ..................................... TTCCATGTATCCACTATATAGACGAAAGGGTCTCC 8167 37 100.0 35 ..................................... TTTTGCCGCTAGAATTACACATCATTCACCAGAGT 8095 37 100.0 39 ..................................... AGAAAGTAGTAGGAATTAAATGGTTCGATTTCTAACTAA 8019 37 100.0 34 ..................................... ACTGCTCCATTGAGACCTTTCTTGTTACCGAAGT 7948 37 100.0 37 ..................................... AAAAATGTCTCTATTATATACGCCTGATGTCCGTAAA 7874 37 100.0 34 ..................................... TTGACGTGGAGCGCGGAGGTCGCGAAAACCCACG 7803 37 100.0 36 ..................................... ATTCAGAACCTTACATCAAGCCATTTCCGGGCACTG 7730 37 100.0 36 ..................................... GTGATGGATTCCTTGAGTTTCACCTGAATCGCTCTC 7657 37 100.0 35 ..................................... CGCACTAATTAACACGAATTAAAAGAAAAGTAACA 7585 37 100.0 38 ..................................... TTTTCTTTTTCAGTCGTCCCGGTCATGGCTGCAGACGA 7510 37 100.0 36 ..................................... TGAATTACATCTCCCGGATCTGCGGGCATGGTCCCG 7437 37 100.0 35 ..................................... TGAGCTCGGTTTCTCTGTTGAACTTCTCCGCTTCG 7365 37 100.0 36 ..................................... TTACGGAGGCTACAGAAAAAGCCGTAGCTGATACCG 7292 37 100.0 34 ..................................... GAAGGAAGTGAGCTTGTTTTAGACTGTGCTGCTA 7221 37 100.0 36 ..................................... ATGCTAAAATCGCATACACTAGGCTGTCTACCCTAT 7148 37 100.0 36 ..................................... TATGTATATTCATATATTCGAGCACGGCGAAGAACT 7075 37 100.0 35 ..................................... TGGATCGTGGAGGGAGAAGATTGAGTAATAAAAAA 7003 37 100.0 35 ..................................... AACATAGATTTTGACGAGCAGGACATAAACCAGGG 6931 37 100.0 35 ..................................... AAAATGATTCATACCTTTGTAATTCAGATTTAAGG 6859 37 100.0 36 ..................................... TTGTCCGGATTTTGTGGATTCTTGATATTTCCCTGA 6786 37 100.0 41 ..................................... GGTTGCCCGTATGGTGTTTCGATCATATCTTCGTCACTCCT 6708 37 100.0 37 ..................................... ACCAAACCAAAGCAAGCCAGAAAGCCTGGCAGTATCG 6634 37 100.0 36 ..................................... ATTCTGCGGGTGGGGCTGCCGTCACAATGGGCGGGA 6561 37 100.0 35 ..................................... CAACGATGTAATGTTTTGGAATTGCTTTTCACCTT 6489 37 100.0 35 ..................................... TAGACCCCGCAAGGCCCAGAAGTGCGGTCCTAACA 6417 37 100.0 36 ..................................... TTTCATAAATTCGAGTCACATAAATATCCATGATTG 6344 37 100.0 35 ..................................... TGCGGCTTTATCTATTCAGGAATCTGAACTAAAAG 6272 37 100.0 36 ..................................... ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 6199 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 6127 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ============================================== ================== 122 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 8924-14154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPN01000139.1 Methanosarcina mazei strain 3.H.A.1A.2 scaffold87_1_size16684-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 8924 32 100.0 34 ................................ ATGCAGAGGCATCTTGAAAAGGAAGGGATACACG 8990 32 100.0 32 ................................ AGGCAGGAGTAGACGAGGTACAGAGCACAGAA 9054 32 100.0 34 ................................ AGGGAAAACAGGCATTGTAATCAGAGGAAAAAAA 9120 32 100.0 35 ................................ CCTTATCTGTGAAGTAGGACGTGGGATACTCTCAT 9187 32 100.0 35 ................................ AGCATATCGAGCATGTCCCTCGGATATCCTGCGAG 9254 32 100.0 34 ................................ TCATTGGGCAATAATAGAGGGATCTCGTCCCGTC 9320 32 100.0 32 ................................ TGTTTGCGACAACGACATGCGGGGATACGGGC 9384 32 100.0 35 ................................ TGATAAGGTCACGCGATTTATCCCGGCAGCCACCC 9451 32 100.0 34 ................................ AAACCCTTTGTCAAGAAAGTAGGAATCGAGAAGC 9517 32 100.0 34 ................................ TAGACTTGCGTCTATATTGACTGATTCATGCAGT 9583 32 100.0 34 ................................ GATAAGGCTGGAAGATATCGATATTCAATTGATC 9649 32 100.0 33 ................................ AAAACGGAGACGGCACCCTTGTAAATATTACAG 9714 32 100.0 34 ................................ ATCAAAATATTTCCTGACGTATATCCAATCGATG 9780 32 100.0 31 ................................ CCTCTGAATCATAGGAATAATACCCACCAGG 9843 32 100.0 39 ................................ AAAATCGCATTAACCTCCTGGACCTGCTCCGGCCAGAGT 9914 32 100.0 33 ................................ CAATTGTTGCGGTTCCGAGATCAAAACCTGCCA 9979 32 100.0 35 ................................ AGTAATAATGGAGTCATAAGACCCAAAATCATGAA 10046 32 100.0 35 ................................ TCTTCTTGAGGTGGTTTAAATGCCTAAATTTAACC 10113 32 100.0 36 ................................ TTGTAGAATACTACAGTGTTAAGCCCCGTGAATGGG 10181 32 100.0 38 ................................ TTCCTCAGTACTCCGTTTACCCTCACATACAGTACCCC 10251 32 100.0 36 ................................ TTAACAAGGTCTGCGCCTTCGTCGAGCGTTAACAGT 10319 32 100.0 34 ................................ CGAAGTATTTTCAAAAAGAAATAACAGCTTAATA 10385 32 100.0 36 ................................ TTACTACAGGTGCCCCTGGTCTTGCCTGTGCGAGTT 10453 32 100.0 32 ................................ ATGAGCGTGATTGTAAACGGGACATTAGCAAC 10517 32 100.0 35 ................................ CTTAAGCACAGTTCTATTTTTTGACCTCGATATTT 10584 32 100.0 33 ................................ AGTTCATTATGCTGATAGTCCCTAAGATAGAAC 10649 32 100.0 35 ................................ TATTTGGTGTCAGCATTATTCCAAGTTCAGCTGAG 10716 32 100.0 36 ................................ TCTCAAATGTGTCTTTCATGGTTGCCACAAGTGCGG 10784 32 100.0 34 ................................ CTTAAAGTAATACAATAATAAAACCGATAACAGG 10850 32 100.0 34 ................................ ATGTTCGTTTGTGGGTCTTTTTCGAAAACGAAAT 10916 32 100.0 37 ................................ TGTATTATGCATTGCCACAATGCGCTCGGCTGCTGCT 10985 32 100.0 35 ................................ AGATCACTAACTGTGATATCATAATCCTCAAACAT 11052 32 100.0 34 ................................ AATATAATTAGTTATAGAAAAATCTGGGCGACTC 11118 32 100.0 34 ................................ ACGCCACCAAGGGGATTGCATTAGGCTTGTATAG 11184 32 100.0 37 ................................ GGTGATTATGTCCTTGACTATCGTGCTTTTTGTAAAA 11253 32 100.0 37 ................................ ACGCCACCAAGGGGATTGCATTAGGCTTGTATAGATC 11322 32 100.0 34 ................................ AGAATTAGCTGGCATCATAGAAAATTCGCTTCTA 11388 32 100.0 34 ................................ AGTTTCCTGATCTCCGTAATCAAGGAACGGAAAC 11454 32 100.0 36 ................................ ACAGACACTATATATATCAGCGTTTGACGGTCTAAA 11522 32 100.0 32 ................................ TAAGCCTGTTTGGTCTTGCAGACCATAAAAAA 11586 32 100.0 34 ................................ ATAAAAGCAGGGCGGGTGACTGTTGAATTAGGGG 11652 32 100.0 33 ................................ ACTAAAACGTAGCTTTCCGCAACTGAACATCCT 11717 32 100.0 36 ................................ AGTGCATGGTGATAGGCAGGATAAGCCCCAAATACG 11785 32 100.0 34 ................................ AGTTGTTGGTTATTTTTATGTTAAGAGGATTCAA 11851 32 100.0 34 ................................ TTGCACGTTAGGGACCGCACTAAGCGCGGAAAGA 11917 32 100.0 35 ................................ TCGTTTTCCCAGGTCATGGTTATCCCTCAACTACC 11984 32 100.0 34 ................................ CATATTTTAGAATTCACGTACCCCCCGTCTTCAT 12050 32 100.0 36 ................................ CAGGACCTTACCCGGCAACAATACGAGCTCTTTAAA 12118 32 100.0 34 ................................ CGTATAAACCACAGACATAATCATCAATGTCAGG 12184 32 100.0 33 ................................ TAAAAAAGAAACTTGATGAATGTAAAAAGGGGA 12249 32 100.0 36 ................................ TAAAACTTCGATATCAATCATAATGTGGCTCCGATT 12317 32 100.0 36 ................................ AGCAGATGGGAAAACCTGGACCGCCGCAACCTGCCC 12385 32 100.0 34 ................................ TTTGAATTTAAGAACGTCGAGAGAACCGGCTGCA 12451 32 100.0 35 ................................ CACTTGTCTACATTGTCCATGCGAACATTTCCCCC 12518 32 100.0 35 ................................ ATCTAACGGATTGTATAATAGATGGTATAGGGAGT 12585 32 100.0 34 ................................ CCGGAGCGTACCAGTTATTCCTGCCGCTCTAGCT 12651 32 100.0 34 ................................ CTTTACCCATCCAAACATCCCCGCTTTTTTGGAC 12717 32 100.0 33 ................................ GAGGAAGACTTAGACACAGATGAGGACCTGGAC 12782 32 100.0 36 ................................ TTTTTCGCACTGTATCCAGCCCTTACAACAATTGGG 12850 32 100.0 35 ................................ TTTAATTATATCGTCAACTACTTCATAGATATACT 12917 32 100.0 38 ................................ CCCATTCGCAAGACTGCTGTTGGGGTTCCGTGTAGGGC 12987 32 100.0 35 ................................ CGAAACATACGACTGATTTGCCGAATTCCCGTCGA 13054 32 100.0 34 ................................ CTGATATTACTTTTATTTGCATTCGGGATGGCTC 13120 32 100.0 35 ................................ AGATTCAGGGCACTCAAATTTCACATATGCCGGGC 13187 32 100.0 34 ................................ AAGACATTGAGACAGTATTTTAAGGAATTTCAAG 13253 32 100.0 36 ................................ CTGACGAAAAATATAATATGGTCACTGTTTATGGTA 13321 32 100.0 35 ................................ TCAGGAGCAACATAAACTAGGGTTTTGTTTCCGAG 13388 32 100.0 35 ................................ TCTGATGGAGCCGGAAGGAAAATCCCGTATTGGAT 13455 32 100.0 34 ................................ CATATTTTAGAATTCACGTACCCCCCGTCTTCAT 13521 32 100.0 35 ................................ TTCCAGGGATTGCACATGCCGCAGAAGAAGATCAC 13588 32 100.0 32 ................................ CAAACAAAGATGCCATATTGACTAAATCAAGA 13652 32 100.0 33 ................................ CCCGCAGGAGTCGCGGAAACATAAGGCCCCAAC 13717 32 100.0 38 ................................ CGGCATACTGCCAGGATATGTATAAGTCAAACTTTCTA 13787 32 100.0 35 ................................ TTTTTGAAGTGCCCTGGTTTGCTGAATATGTGATA 13854 32 100.0 34 ................................ AGTATCTACAGGGCATTTGTCCCCATCGTCAAAC 13920 32 100.0 34 ................................ ATTGCCCCGATTATCCAGGCAGAAAGAGTCGAGA 13986 32 100.0 36 ................................ AGATTAGAGGTTGTCGGCTGAAATGAATTAGAAGTA 14054 32 78.1 35 ...A..T......A......A..A..C..T.. CAGTCAAAGATTCCCTTTATTCTGACCTCGATTTC T [14060] 14122 32 90.6 0 A...............A............G.. | G [14150] ========== ====== ====== ====== ================================ ======================================= ================== 79 32 99.6 35 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : AGATATTGACGGTTATCCGCCATTTTTTATGAATTGAGGTGTTTATAGTGATGGTACTGGTTACTTATGATGTAAACACAGAATCAGAGGGTGGAAAAAGCAGGCTGAGAAAAGTGGCAAAAGAATGTGAAAATTACGGGCAAAGAGTTCAGAACTCTGTATTTGAGTGCCTTGTGGACCCTGCTCAGTTTGCAGAGCTAAAACATTCTTTATGCGATATTATGGAAGAGGATAAAGATAGTCTCAGATTTTACTACTTGGGTAAAAATTGGAAAAATCGGGTGGAGCATTTTGGCGCGAAAAAAGGGTATGACCCAGAAGGTTTATTACTTGCATGATGTCTGCGAACCTGTAGTAAACATCAATTTCCCGGGGGTTCGCAGGAAAAATTTGTTCATAATATTTAATTTTTGTGACGGTTTATATCTATAGTCAATACTTAAAATTTTTTAAGACAGAAAAATACAAGATGGTAGAAGTATAACCTTAATTTATTTACA # Right flank : TGTTAAAGCTGTGGCCTTGACATTATCAAGAACCATTTTTTATACAATGTCAAGCGAATTTGAAAAATAATAAACGGCAGCAGAAGAATAATATTTTTACGTAAGAAATCTTCGGAAAGCCAATTATTAAAATCTCATATCCCTGCTTCGTACATTGCTTGAAGTAATTCATATTCTGCATTAATGACTTCAGGAGTTCTATCTTTGTTTAATAACGAATTCATTTTATCAAGTGCTCTTTTATAATTTTCAACTTCCACCGGGCAATCGAAGAGATAATTAACTTTTATTTGTGGCTTATCGGGGTTCTCTGCGTTCCATGAAACCCTTAAGAAATTATGGTTCGCATCCATGACCTCAGCATCATAAATAAAGTCCATGCGTTCATGTTTAAGTAATTCAGATTTAGATACCCCACTGTCTACTAACCGCTGCCTGGCTCGTGCCTTTGCCATCTCAAACTCTTTAGAACAGCGCAAGAGTTCAGGAGTATATGATAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 60309-68713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPN01000055.1 Methanosarcina mazei strain 3.H.A.1A.2 scaffold2_1_size93826-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 60309 37 97.3 38 .....T............................... TATTTTTGATAGATGTAGCCAGTGCAGGCCAGATAATT 60384 37 97.3 38 .....T............................... TATTCAAGAGCAGGCCAGGAACTACCGCGCCAAACTGT 60459 37 97.3 35 .....T............................... TGGCTTTTGCGCTCGTTGGAGGAACTACCCAACCT 60531 37 97.3 38 .....T............................... TCCAGACCGGTTGAGACATAGGGGTGGCAGACGGAAAG 60606 37 97.3 41 .....T............................... TTGAGTATGTTAAGGGCTGCTGTTCTTACGTTGTTGAACTG 60684 37 97.3 39 .....T............................... TTTATCAGACTTGCGACCCGGCGACCTCCACAAAATCCA 60760 37 97.3 35 .....T............................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGA 60832 37 97.3 36 .....T............................... TTTAGTACTGTTCTGCCTTCCGTTTGTGTTCATTTG 60905 37 97.3 35 .....T............................... TCAATAAAATTATCTTGTCCTCTGTGACCTCTCCT 60977 37 97.3 36 .....T............................... AAAATATCAGTATTGTTAGTACCCTTCCTATAGGGT 61050 37 97.3 38 .....T............................... ATACAGGCTTGTTAGAATTACTCAGGTTTGACTTATTT 61125 37 97.3 35 .....T............................... GCCGTGACTTCGATAAGCTTCTCATAAATTGCGGC 61197 37 97.3 35 .....T............................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGAAT 61269 37 97.3 34 .....T............................... GCGTCTGTTGTATTTTCATTTGCAAATGTGACGG 61340 37 97.3 35 .....T............................... CGGTCCAATTTGGATCAGGAACCGAAACTCTAATC 61412 37 97.3 37 .....T............................... ACCCGTTGTTAGTCTGATACTACATGGACATTTAGGC 61486 37 97.3 35 .....T............................... ACAGATTAACATATTCAGATTCAAGAGCATCAACT 61558 37 97.3 37 .....T............................... TGGACAGGGAGCGGGTTTTTTGCAGGGAGGTTGTAAT 61632 37 97.3 34 .....T............................... TGTGCAGACGGGATAATCTGAAGACGCTCATCAT 61703 37 97.3 35 .....T............................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 61775 37 97.3 36 .....T............................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAAC 61848 37 97.3 36 .....T............................... ACACTCGCGAGCAGGGAATATCCATTCCCTAGATCC 61921 37 97.3 36 .....T............................... GAATTTTCAGGACTCACTTTCGATGGAAATTACAAT 61994 37 97.3 36 .....T............................... CCTAATAAGTTCCAAGCTTTATCAAGTCTGTTTCTG 62067 37 97.3 37 .....T............................... CATCCTGTGAATTCAGGAAGCAGTCTTGAAGCAAGAA 62141 37 97.3 35 .....T............................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTG 62213 37 97.3 35 .....T............................... ACACTTACTTCAAGCAGTGCCGACACTTCCGCGAA 62285 37 97.3 33 .....T............................... GCCCCGATCTCCTGAAGAAGAGGCTGGATATTT 62355 37 97.3 35 .....T............................... CTTCGTGATACCGTTTCCCCATCAAAAAAGAATTA 62427 37 97.3 34 .....T............................... TGCGATTCCACAGACTCAGTGAAACCCATGTCAA 62498 37 97.3 38 .....T............................... ATTATACCCCCCATATATACACGCGTATTATCAGAATT 62573 37 97.3 36 .....T............................... TCAAATCAGAGCATTATAAACAGTGAAAATAATAAT 62646 37 97.3 34 .....T............................... AATACTTCTGCTGAAAAACATGTTATTTTTTGAG 62717 37 97.3 37 .....T............................... TTGAGTCGATATCTTCCCAAAATGTCTTTCCATTGTT 62791 37 97.3 35 .....T............................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGACA 62863 37 97.3 37 .....T............................... TCTATTATTTCCTCTTGCATCATTCCACCCCTAACAC 62937 37 97.3 35 .....T............................... CTATTACAGAATCTCCTTTTGGCGGGCTGAAAGGT 63009 37 97.3 36 .....T............................... TATAGCACGGGTATCGGCAACAACTAAACTCTGTAA 63082 37 97.3 35 .....T............................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTTA 63154 37 97.3 35 .....T............................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 63226 37 97.3 36 .....T............................... TCTCTGCTTCGTTCTTTTCATATGCTTTTTCTGCTT 63299 37 97.3 35 .....T............................... ACGCATTGTGTTAGCATCACAGACTTAAAATTATC 63371 37 97.3 35 .....T............................... CAGTTAATTTTTCATTATTGATTCAATGAACAGGA 63443 37 97.3 35 .....T............................... ATGATACGTGGGTTCAGTGCATGGTAATCGGCAGG 63515 37 97.3 35 .....T............................... GGAGTCTGGCATCTATCCACTTCTCAGATGTTCTC 63587 37 97.3 35 .....T............................... CTCGGTAACAATATCAAAAACGCTATCAGTGATGT 63659 37 97.3 34 .....T............................... CTTATATATGAATTCGGTTTTAACCTTCGTTTCC 63730 37 97.3 34 .....T............................... CATTAGCTTTTCAATTAACTTCTCATTTGCCTTA 63801 37 97.3 34 .....T............................... ATTCAAGAAGCTCTTTTTTCATGGTTTGGATTGA 63872 37 97.3 37 .....T............................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 63946 37 100.0 35 ..................................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 64018 37 100.0 34 ..................................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 64089 37 100.0 36 ..................................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 64162 37 100.0 35 ..................................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 64234 37 100.0 35 ..................................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 64306 37 100.0 35 ..................................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 64378 37 100.0 34 ..................................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 64449 37 100.0 37 ..................................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 64523 37 100.0 35 ..................................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 64595 37 100.0 38 ..................................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 64670 37 100.0 37 ..................................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 64744 37 100.0 33 ..................................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 64814 37 100.0 35 ..................................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 64886 37 100.0 35 ..................................... AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 64958 37 100.0 35 ..................................... ACAATACAATTACTCATTCTCCAGTTTGATCCATA 65030 37 100.0 35 ..................................... TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 65102 37 100.0 34 ..................................... TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 65173 37 100.0 36 ..................................... ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 65246 37 100.0 36 ..................................... CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 65319 37 100.0 35 ..................................... CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 65391 37 100.0 35 ..................................... CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 65463 37 100.0 34 ..................................... AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 65534 37 100.0 35 ..................................... TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 65606 37 100.0 32 ..................................... TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 65675 37 100.0 34 ..................................... TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 65746 37 100.0 35 ..................................... CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 65818 37 100.0 37 ..................................... CTCATCAAATCTGTTGGAGCTTGTGCCCGCTTCGCTC 65892 37 100.0 36 ..................................... CACTGTTGCAGAAGGCGGAGCAAGCGACATTGTAGC 65965 37 100.0 34 ..................................... TACGTTGTAGTGTTTGCAACCTCATTACCATCAA 66036 37 100.0 36 ..................................... ATACTAATACGCTTTTTAGATATAAAAAGGTATCTA 66109 37 100.0 32 ..................................... CGTTTCCTTCTTTGAGGATGCAGGTCATTTTT 66178 37 100.0 35 ..................................... AAATCTTTTTTATCGCTTATCTGTTTCCAGTGATA 66250 37 100.0 34 ..................................... TAGTTACATTCCATCAACAAAAAGAGCCTTACAG 66321 37 100.0 34 ..................................... CTGTCTAGGCTGCCCGTATCTATTTCGATTCCGG 66392 37 97.3 34 .....C............................... TTAGTAGATACTTAGCTAAGTAAATGTATAAATA 66463 37 97.3 35 .....T............................... CTTATGTTCTGTGCTCTTAAAATAGTGCGCGAAAA 66535 37 97.3 37 .....T............................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 66609 37 97.3 33 .....T............................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 66679 37 97.3 35 .....T............................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 66751 37 100.0 34 ..................................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 66822 37 100.0 36 ..................................... TTTGAGAGTGTGCAATATTTGAATTGTTCTTTTTTT 66895 37 100.0 35 ..................................... AAAATACAAGTAAAGTAAGCCACACAATCCCTCTC 66967 37 100.0 35 ..................................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 67039 37 100.0 34 ..................................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 67110 37 100.0 36 ..................................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 67183 37 100.0 35 ..................................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 67255 37 100.0 36 ..................................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 67328 37 100.0 34 ..................................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 67399 37 100.0 36 ..................................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 67472 37 100.0 35 ..................................... TACAAATCCTGGACATTTCCAGAATATGAATTCCC 67544 37 100.0 34 ..................................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 67615 37 100.0 37 ..................................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 67689 37 100.0 35 ..................................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 67761 37 100.0 34 ..................................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 67832 37 100.0 43 ..................................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 67912 37 100.0 32 ..................................... TTATCAGCGTGGATATAATACTTATATTTCTT 67981 37 100.0 37 ..................................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 68055 37 100.0 36 ..................................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 68128 37 100.0 38 ..................................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 68203 37 100.0 38 ..................................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 68278 37 100.0 34 ..................................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 68349 37 94.6 71 ...................................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 68457 37 83.8 35 TG.......T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [68462] 68530 37 86.5 34 .G.......T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [68537] 68602 37 83.8 36 GG.......T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [68607] 68676 37 81.1 0 TG.......T.GCT......................G | A [68681] ========== ====== ====== ====== ===================================== ======================================================================= ================== 116 37 98.1 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.68, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 77849-78177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPN01000055.1 Methanosarcina mazei strain 3.H.A.1A.2 scaffold2_1_size93826-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 77849 37 59.5 36 TGGTCTCC.TCTTTA.A.................... TTAAGATGACCAGCGATCACAGTTTTCGTCTCTGCC 77922 37 78.4 35 .G..G...GT.GCT.....G................. CTATTTCCCTATACCTTTCTCACTCAAAACCATTA G [77931] 77995 37 100.0 35 ..................................... TCAGAAAGTTCCTGCATCGAGTCTACCCATGCATT 78067 37 86.5 37 ....GC..G...................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 78141 37 81.1 0 ....G.T.A.........T........A.....T..T | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 81.1 36 ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATAGGTCAAACAATTAGAGCAATAAGATATCATTTAGGTGAGTTAGAAGCATGTTGGTTACTGTGTACAAGAGAAACAAAAGAGAGTGAAGAGCTAATAAATTACTTTATAAGAAAATTCTCTAAGAAAACGGTAGACATCCAATCAATCGAATTAATAAATTCTTCAAAAATTGGTGATACTTTTAAACAAATAAATGAGATATATATAGAAAAAATAAAAGGAGTTGGTTTAAAAGAAGGAGAGGTCATAGCAGATTTGACAGGAGGAACCGCGGTTACGAGCTGTGCGATGGTTCTTGCCTGTGTACCTATAAAAAGAGACATGGAATATGTTCTTCAAAGTACATATGATCTAATAAAAATAAAAGAAAATATCTCTGAAATAGTATTTGATAGATAATTGTTAAACAGTTAAGTTCGAAGTTGCTTAGAATTGGCTAAAAATAAGAAAGATAACTCTTTAAGAAATAGTTGCCACGAAATAAATAGTGAGATGCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.05, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //