Array 1 11559-17947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQAD010000018.1 Acinetobacter baumannii strain SQ082 contig_18_len_62856:location=chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11559 29 100.0 31 ............................. GATTGGCGCTGTAGTGGGTTCGGTGTCTGTA 11619 29 100.0 31 ............................. GCGAGAACGGTAGCCCTTGCCTACAGTCGGT 11679 29 96.6 31 ............................A GTCTGGAGCATAGCAGTCTAAGCCTGCATAT 11739 29 96.6 31 ............................A CCATGATGCTAAAAAGTGGAGTTTAGAATTA 11799 29 96.6 31 ............................A AGCATCGGAATATGATTTTTCACAGTAAGAG 11859 29 96.6 31 ............................A ATCTTTTCATACTGTGAGGTATCAAAGTCTG 11919 29 100.0 31 ............................. AAATATTCAAGAGCTGAATCGGGTGCTTGTT 11979 29 100.0 31 ............................. TGTCGCATCAAGAACGAAGCCGAGAATGATT 12039 29 96.6 31 ............................C AACATCAGATGGTTGGTAGTGCCACCGAGTC 12099 29 96.6 31 ............................G AGTACAGGCAAGCCACCACCAGCAACTAGTG 12159 29 96.6 31 ............................A TAAATTTTAGATTGCTGAAAGTGCAAATCAA 12219 29 100.0 31 ............................. TTCACAAATTTGAAAGCCTCATTGCCGAAAT 12279 29 96.6 31 ............................C AAAACGTGCGTAAACTTTCGAGCCTTTATAC 12339 29 96.6 31 ............................A TTAAAGATATACGTTAAGGTTCCACCATCTT 12399 29 100.0 31 ............................. TATGTGGGGCTTGGGGTGAAACCCCATATCT 12459 29 96.6 31 ............................A ATAAATTCGTTTTGCTTTGGTGATACTTCAC 12519 29 96.6 31 ............................A CCAGTTACACCACATTTTTGGATTCTCAACG 12579 29 96.6 31 ............................C CAATAAATAGGATTGTCGGCTTGCGATTAAC 12639 29 96.6 31 ............................A TCTGATATTTACCAGTAGAAATAACTAAAGG 12699 29 96.6 31 ............................A CCTCCAGCTATTCCGCCTGAGAGTAGTACTA 12759 29 96.6 32 ............................A TTTTGAGCAGCAATTGGCTCCAAAGCCGATTT 12820 29 96.6 31 ............................C AACTGAAGATAAAGGTATCATTACTGGATTG 12880 29 100.0 31 ............................. TATGTTGAGATTAAGGCTTCTCCATTAAAGT 12940 29 96.6 31 ............................A AGTAGTAATACCATGGCATCACTTGGACAGT 13000 29 96.6 31 ............................G TGATGGGTCAGACCTATACCATTGAATTACC 13060 29 96.6 31 ............................C AAAGCACCACAGCCTGAGGATCAAAAGATTC 13120 29 100.0 31 ............................. GAATTGTTAGGGGCTGCTATGTTAGGTGAGG 13180 29 93.1 31 T...........................A CTAAACACAGGCTTAGACGTAATCTCATAAC 13240 29 96.6 31 ............................G CACTATCGACATACGTTATTTCAACACCGTC 13300 29 100.0 31 ............................. TAGCTTGTTCTTTGGAATAGTTATATAAAGA 13360 29 96.6 31 ............................A ATACCCGGATGCCCCAATTCACCTCATTATG 13420 29 96.6 31 ............................A TTACTCGAAAGCAGGCTTTTGAGTATTTGAA 13480 29 96.6 31 ............................A AAGCCAGTTTTCAGGCTTCATTTGCTTCAAA 13540 29 96.6 31 ............................G TTAGAACCGTGTGAACCTCGTTTCCCTGTAA 13600 29 100.0 31 ............................. TCAACAACAAAGTCGATAACTAAAAACTTAG 13660 29 100.0 31 ............................. TGATGTTTTGGAAGCTTCGATGGCTCAGGTG 13720 29 100.0 31 ............................. TCCGCTGTAGTTGGCGGGTTGAAGGTCATTA 13780 29 96.6 31 ............................A CAAGTCAACAGACCAAGCATAAGTAAACTTG 13840 29 100.0 31 ............................. GTTTTAACCCAAGATGATGTGAAAGCCATAA 13900 29 100.0 31 ............................. GCTGTAAATGAAATCAATGCAAAAACCAATT 13960 29 100.0 31 ............................. ATTTATGAATTTCTATACCGCGATGGTGTTG 14020 29 96.6 31 ............................G ATACGCAACTGCAAGATGCCGATCTCCCGTA 14080 29 96.6 31 ............................A TTAGCAAATCCCCATTGAACGAAAATTATCA 14140 29 96.6 31 ............................A TCTTCCCACTGTGCACCTTTTACCGTTACAA 14200 29 100.0 31 ............................. GTTTGATCAGACGCAAATATTGCTGCCCCAT 14260 29 96.6 31 ............................A TTAAATGATGAGTTTAAAAGGCGTTCCATTC 14320 29 100.0 31 ............................. CTGGCACCGCCTGAGCTTTGGCTTTTTCTAG 14380 29 100.0 31 ............................. AATTGGTATGTGTCGAATAGGAAATGGCACT 14440 29 96.6 31 ............................A ACTGGTGGTTGTGCTGCTTCGATTCGATAAG 14500 29 100.0 32 ............................. CTTTGATTTTTTCAAGCTCTAAACGTGCTTTA 14561 29 96.6 31 ............................A AAGCCACCAATACAGCTTTAGGCGCTTTACC 14621 29 96.6 31 ............................A ATTCGCGGACTGCAAGTAGAACACTTGATTC 14681 29 100.0 31 ............................. GTAACTGCTAAAACCAGAACAGTAACTAAAA 14741 29 96.6 31 ............................G ACATGGCGAGTTGCAGCAGGAATACCATAAT 14801 29 96.6 31 ............................A CTGGTCTAGGCGCTCTATTTGTGGCTGCTAT 14861 29 100.0 31 ............................. GAACGTCAGATCTTTGCTGACATCGAGGGTC 14921 29 100.0 31 ............................. TGGAAAAGCCACACTCACACAATTGGGAAAT 14981 29 96.6 31 ............................C GAATCAGATTCTTTTAACTCGACACGATAGT 15041 29 96.6 31 ............................A TACGCGCTTTTTCACCAGTTGCCCTTGTGAT 15101 29 100.0 31 ............................. GTTTTAGTTATACCAATTTCGATTTGAGTTT 15161 29 100.0 31 ............................. AGACCAGAATTTATTGTTTCATAGCATTCTT 15221 29 100.0 31 ............................. AAAAAGTAATCCAGTTGACATTATTTCCGTA 15281 29 100.0 31 ............................. TTATAACCATTGAAAGATCCATAAATGATTC 15341 29 100.0 31 ............................. CTGGGCAATAAATAGAACCATCTGCTAAACG 15401 29 100.0 31 ............................. CGCTAAACAATAGCATCACCAATATTAACGG 15461 29 100.0 31 ............................. AGCAATGCTGAGGGCTTCCAAGATGGCTACT 15521 29 100.0 31 ............................. TGAAGCAACTTAGCGGGTGATGCTTTGATTT 15581 29 96.6 31 ............................A TGATGTATATAGGATCGTACCCACTTGTAAC 15641 29 96.6 31 ............................A GAAGCTCCGTATAAGAGTCACACGGCGTTGT 15701 29 96.6 31 ............................A TTCCATTTTTATCAGCTATTTCCTTTAACTG 15761 29 96.6 31 ............................A TAACTTATATTTTTTTCACCTGAATGAAGCA 15821 29 100.0 31 ............................. TGTGGTGAGATCGGCCCAACTAGCGTGGTTT 15881 29 100.0 31 ............................. TCTTCACTAAGCTTCTCAGCCATCGATTCAA 15941 29 96.6 31 ............................C AACTGTCAGGCGGAGTCGTATAGCCAATTTC 16001 29 96.6 31 ............................C GCAAAAAAATTGCGGGCGAATTATTCACTAC 16061 29 96.6 31 ............................G CTAAAAGATACTTAAAATCTGTTTGCCATGT 16121 29 100.0 31 ............................. AGCCAATTTGCCTTTACCTGAAGCGGGTTGC 16181 29 96.6 31 ............................A TTCCATTTTTATCAGCTATTTCCTTTAACTG 16241 29 96.6 31 ............................A GACACGTTAAAGGTTGGGAAATTGGCCACTG 16301 29 100.0 31 ............................. TGTGGTGAGATCGGCCCAACTAGCGTGGTTT 16361 29 96.6 31 ............................G TGCCGCAAATCCCTTACTTCAAGATGTAAAT 16421 29 100.0 31 ............................. TACCCACTCTATTCAATAATGTATCTACCTT 16481 29 100.0 31 ............................. GTCAAAGTGTCTAGACTACGCCTTGAGACAC 16541 29 96.6 31 ............................C TCAGCATCTACTGAGTAGAAGCTTGATTCGA 16601 29 96.6 31 ............................A AGTTAATCAGTGTCGTTATGTGCGTGCACGG 16661 29 96.6 31 ............................A AATTGCATGATCATCATGTCTATGAACCCAA 16721 29 96.6 31 ............................C TGACTATTGAGCTTTTCAAAGTCCTGTTGGT 16781 29 96.6 31 ............................G TAAAATCCACATTATTAAAGAAAGTCTCTAA 16841 29 100.0 31 ............................. ACACCTGTTTCGGGTTTAGCTCGATGTGGCT 16901 29 100.0 31 ............................. TAAACCATTTGAACGTGAATTATTAAAGTTC 16961 29 96.6 31 ......T...................... TTGGTGGCAATATGATTTTTCGACACGGCGT 17021 29 96.6 31 ............................A GCAAGGTCACAACCGTTACATTGCTTGCAAT 17081 29 96.6 31 ............................A ATTACAATAGTTTTCATTCTTGCACTCCATG 17141 29 89.7 31 ....G.......CC............... GTTCCTGATAAACATGTGATTGCTTTTAAGA 17201 29 86.2 31 ....G....T..CC............... ATTTGAATTAATTAAGTTTCAACGTTCTAAC 17261 29 82.8 31 ...GC......TG...............A ACTATTACGACAACATCAACCAGCAGCAAGA 17321 29 89.7 31 ...GC.......................G CACATAAGCATCAAATTTATCACTTCATTGT 17381 29 89.7 31 ...GC....T................... TATGTGGGGTTTGGGGCGAAGCTCCATATCT 17441 29 82.8 31 ...GC......TG...............A GCTATCCAAAGCGTTCAATGATCATCTTCGG 17501 27 82.8 31 ...AC.......G......--........ ACAGATGCAGACCGACTAGGGTTCAGGAAGG 17559 29 79.3 31 ...GC.......CC........C.....A TATCGAGAGCTTTGTCGATGTAGACCTGCGC 17619 29 89.7 31 ...GC.......................A CCATTGGACTTGATCCGCTCCTGTGCCGAAT 17679 29 89.7 31 ...GC.......G................ TGCATGTGCAACGGCGCGTACGCTGCTAAAA 17739 29 82.8 31 ...GC.......CC..............A CATGGGAGCTTCCATTTAGATGCGTTATCAA 17799 29 86.2 31 T..A........TC............... GTTTTGCGCGTAGTGCGATTTGTTTTGCATT 17859 29 89.7 31 ...GC........C............... CGCCCCATTCCATCCAAACGCGATTTAAGTA 17919 29 89.7 0 ....G...................AT... | ========== ====== ====== ====== ============================= ================================ ================== 107 29 96.5 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGCCTTGAGTTTACGCGTGATGAAGGTAAAAACTCTCACGATACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTGGCTTTAAATGGTATGGGAATTAGCTTTGCCCTCCCTATTCTGCATGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCCGATCTGGTTAAAGATGCTTTTGTGATGCCAATCGCTTTTACATGTGCAGTAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTAAATTTTAAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-49] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //