Array 1 167036-169138 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADFGO010000007.1 Trinickia caryophylli strain LMG 2155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 167036 29 100.0 32 ............................. CGCGTCGCAGGGACGTGTTTCTGCAAGGTCGA 167097 29 100.0 32 ............................. GCGGCATGAGCGATACCAGCGAAATTCAGATT 167158 29 100.0 32 ............................. TCGAGGACACCCGTGAATTCGTGCTCGTGGGC 167219 29 100.0 32 ............................. CTGACGTCCAGATGAATTTCATGACGCCCGTA 167280 29 100.0 32 ............................. CGGGATCACAGTAACGGGTAACGCAACGATCA 167341 29 100.0 32 ............................. AGGTGGCGAACGTCATAGAATCAACTGGCTCA 167402 29 100.0 32 ............................. ATGTGATCTTCCAGATGCTGGACGAGTGCACT 167463 29 100.0 32 ............................. TTGAGGGCTGGACGCCGGAGCATGATGACAGG 167524 29 100.0 32 ............................. CATGATCGCGGGCGTGACGCTCGTGGCGAGGA 167585 29 100.0 32 ............................. CCCTCGAATCGCAGCTAGCGGCGCGAGAGAGC 167646 29 100.0 32 ............................. CTCTGGAACAACGGCGGCACTCTCTCGGTTTC 167707 29 100.0 32 ............................. CGCTGATCGTTGGCAAGGACGGAATCAAATCG 167768 29 100.0 32 ............................. GCGGTGATTATGGGGTGCTGTTCTACGCGCAT 167829 29 100.0 32 ............................. CACGACGAACATCATGACGCCGAGCACCGTAA 167890 29 100.0 32 ............................. CCGGCCCAATTGGTGACGGGCAGACGCGGGAT 167951 29 100.0 32 ............................. CCTTTGAGTATCCATAGGGGGGCTGCGTGACC 168012 29 100.0 32 ............................. GATTGCCGCGCATTCCGCTCGGTCGCGGGCAC 168073 29 100.0 32 ............................. ACGACGAGCTGGGGTAGCGGCGTCGAGCAGAT 168134 29 100.0 32 ............................. CGCTCGTAGCCGCCGCTCGCGTTTCGCTTGAG 168195 29 100.0 32 ............................. TGCGTCATAAAGGAATGCAGCGGGAACGCGAT 168256 29 100.0 32 ............................. CCAGTCGGCCGCGGCTCCCCCGTCGGAGACAA 168317 29 100.0 32 ............................. CGTATGAGCGCAGTCGAAGAACGGCAAGACGC 168378 29 100.0 32 ............................. GCCGGCGTCAGTAACTTCTACCTAAATGGGGC 168439 29 100.0 32 ............................. CCCGCTTAAGCAGCTTCTCCCGGACTACAAGG 168500 29 100.0 32 ............................. GTGTACTCGGTGAGCTACGAGTCGGCCCTGCG 168561 29 100.0 32 ............................. ACGGCGGGCGTCTCCACGCGCAAGGTCTGGAA 168622 29 100.0 32 ............................. CAAGCCTACGAGACGTTCAAGGCGCTGTCGCA 168683 29 100.0 32 ............................. GTTCGATAGAGTAATACGCGACCCACTCGCCG 168744 29 100.0 32 ............................. ATCAATTCGGTGCGATGGCGGGCGACGACAAG 168805 29 100.0 32 ............................. AGCATGATAGGGCTCGGCGTGAGCCACGCCAG 168866 29 100.0 32 ............................. GATCAGCCGTGGCGTTGTTTGCTGCGGTCGTG 168927 29 100.0 32 ............................. CACCTCGTCGATGCCGCCCAAGGCAAGCATCC 168988 29 100.0 32 ............................. GCAATCATCAGCGGCGGCCTGACGCTCAGCGC 169049 29 96.6 32 ......................C...... CCTATGACGAGGGGATGGCCGAGCTCGAACGG 169110 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : TTCCGGACATCGAAACGTTGCTTGACGCCGGTGAGCTAGCCAAGCCAGAAGCGCAGGGCGTGGTGGACGCGGCATTCCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCGAGGCTGCGAGGGCGGATGGCGATCTGGCTGCTAGAGGTTCGTGCCGGCGTTTACGTAGGCAACTACAACCGCAAAGTCCGAGAATATCTATGGCAACAAGTGGAAGAGGGGTTGGATGATGGCAACGCGGTGATGGCTTGGCAGGCTGCTAATGAAGCAGGTTTTGATTTTGTCACGCTGGGGACCAACCGCCGCATGCCAGCCGAGTTTGACGGTGCCAAGCTGGTGTCTTTCCTTCCGCCTTTGCAAATCGGTGATGTAGGCGAATAACGCCGTTCACGGCGTGATGGGACCGGGTTCGTTCTTTAAAAATTGGTAAGTTTCGGAGTGTCGTTTTTGTTCTGTAAAATCAGTTGGTTACAGTTGGT # Right flank : GACTCCCATTTACCGTCGGCGCAGGCCTTCAAGGCTGCTTTGCCGGGCGGTTACACGCGAGCTTGACGGCAGCCTCGTTAGTCGGGGGGCGACTGCTCTAGCCTTGCGGTGGCAGGCCTCTTCGTTGTGCGAGGCGCATTGGAGTCTCATTGCGCCAAGCAAGATCAGAAATCACTGACACATACGCGGTGCCATTGGCGTTTGCGTTCTATGTTGCTCGGTCATCTGGCATTTCTCACCGCTACGCACGGAGTTGCAACTGACAGACACCGGTACGTGCCAGGGCATCGAGATGTCCGCAGGACAGTTCTGGCTACTCGCGGAGCATCCTAGCCGGCTCATTGGAGCTGTGCCTTCAAAACGCGGCGGCGGTGACGGCCGGCAGTGACGCCGGCCGATTTACGTAAGCTCTCAGCTCCAATCGTCCATGTCGTGCTTGATCGTATGGCGGTTCGCGATCAGCGTTTCGACGCTCGGCTCGTTGTTCATGGCGCGCTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //