Array 1 2975435-2975729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHZ010000001.1 Paenibacillus apiarius strain MW-14 000000Farrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2975435 30 96.7 36 .............A................ TGTCTTCCTTCCCGTCGAATCGCTTATTAATGCCAA 2975501 30 100.0 37 .............................. GCCACCCACGTTCGTTCTTCTCGGTTGACGTGGGATT 2975568 30 96.7 36 ..........................G... TCTGAAATCTCTATTGCCTCTTGAAGCAACGCGGGT 2975634 30 96.7 36 .................G............ ATTCAACAAGTCGATCCCGTACTTCATCTGGCTTCT 2975700 30 90.0 0 ........C........G......C..... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.0 36 GTTTTGAATGTACCTATAAGGAATTGAAAC # Left flank : GTATTGGGTGCTGCTGTTGCTTCCCGTGCTGCTGCTGACGGGTTACTTAAGCTTCCGTGACGAAGGAGTGGGACTGCAGGACCGGCAGCTTATCGTGCGGAACCGGATTATCGCCCGCAAAACGTGCTATGTGCTGCGCCCGCAGATCGTGGCGCTGAAGCTGGGCCATACGTATTTTCAGGAGAGGAAGCAGCTGCAGTCCCTGACGGCCCATCTGTTGAACGGCGATTCTTATTCGCTGACCTGCCTGGAGGAGCGGGATTTGCAGGGAGTGTGGCATTGGTATCGCAAAAGGAAAAGGTAGAGTACAGACGTGTCGTCGATCGCCAATCGCGTAAAAAGTGCGGGGGATCGACGACACTTTATTTTTCAGAGAGAAAAGGAGCTTGGTCGAGCTGGGAGTAGATTTGCCAATGAATTCAGATTTTTTATTTTCGTCTAAATGTGGGGAGGAGAGCAATGGCGATGTGGCGAATGCTTTAAGGACAAGGCTTTTTGGG # Right flank : CATGGTGAATTGAACAATTAATAAAATAACGAGCTTTAAGAAACGAGCTTGTAATTTTATTACAGTGTTATATTGTGTACGTTGCAAGGATAAAAGATAAATAATTCTTAACCAAGACTTTTCCTATTAAGTTGGAAAGAAAAAGTTCTTTTGTGGATCAGTGTCCTCTATAATGTCGTCGACCTCCAATAGCGTATAAAGTACGGGAGATCGACGACATTTTATTTTTCTAAGGAAAATGGAGCGTTTTCGAGCTAGGATGTCATTTTGTAGTTTAAATGAGATGTTCCCTTTTTGATGAACATTGGAAGGAGAATAAGGGATACTTGTCGAAATGCCTTTAAGAGCAAGGTTTTTTTGGGTTTGTATCGTACCTATAAGGAATTGAAACGCCGCCTGCCCGAAGGAAGGCGTTTGTGTCAGCCTGCGTTTGTATCGTACCTATAAGGAATTGAAACATGAATACGTCTGCCGTGATGCCTGCTTGAAACGTGGTTTGT # Questionable array : NO Score: 6.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAATGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 2976090-2976583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHZ010000001.1 Paenibacillus apiarius strain MW-14 000000Farrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2976090 30 100.0 37 .............................. GCCGCCTGCCCGAAGGAAGGCGTTTGTGTCAGCCTGC 2976157 30 100.0 36 .............................. ATGAATACGTCTGCCGTGATGCCTGCTTGAAACGTG 2976223 30 100.0 35 .............................. TTTTTTGAATCGAACCAATTTCGCAGTGGTTCAAA 2976288 30 100.0 38 .............................. TTATAATCTCTTCTGCTCGTTTCTTCAATGCTTCTGCC 2976356 30 100.0 35 .............................. AGTCAATCGTACATTCCAGTAATGGCCTCGTTTTC 2976421 30 100.0 36 .............................. GTGATTCCGTAGATAAGTGCGTTTATTGCTGTATCA 2976487 30 100.0 38 .............................. GCTTAGCGACCAAGCTTACTCTGTATGCAATCCCGGGT 2976555 29 93.3 0 .G.......................-.... | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.2 37 GTTTGTATCGTACCTATAAGGAATTGAAAC # Left flank : ATTGGAACTCTGAAATCTCTATTGCCTCTTGAAGCAACGCGGGTGTTTTGAATGTACCTATGAGGAATTGAAACATTCAACAAGTCGATCCCGTACTTCATCTGGCTTCTGTTTTGAACGTACCTATGAGGAATCGAAACATGGTGAATTGAACAATTAATAAAATAACGAGCTTTAAGAAACGAGCTTGTAATTTTATTACAGTGTTATATTGTGTACGTTGCAAGGATAAAAGATAAATAATTCTTAACCAAGACTTTTCCTATTAAGTTGGAAAGAAAAAGTTCTTTTGTGGATCAGTGTCCTCTATAATGTCGTCGACCTCCAATAGCGTATAAAGTACGGGAGATCGACGACATTTTATTTTTCTAAGGAAAATGGAGCGTTTTCGAGCTAGGATGTCATTTTGTAGTTTAAATGAGATGTTCCCTTTTTGATGAACATTGGAAGGAGAATAAGGGATACTTGTCGAAATGCCTTTAAGAGCAAGGTTTTTTTGG # Right flank : CTCTGCCCCAATGCCACAGTGGGCCCACACGCTCGTCCGGTTTCTATCGTGCCTAAATTCAAAAGGAATGCAGGTACAATGAACAGGCTGAATAATATAACTAAGAAGCTGACGCTTGCTAGAGACAGACGTTAGCTACTGTTTGTTACGATTTAACCTAACTTTACGCCTTAATTTCGAGGACAAAATCATCAATCAGGACAGAAATTACCTGCTTCAGATATCGCTTTTATAAAGATTATTAAACGATTTATAGCAATTTCTCCATTTGTGCAAATCATAAAGGTTCACCTCCTGCTTTTATTCTACGAATCTAGCAATCAATGCCTTGTGTTCAGAGAATCCCGCAAATATGTTTTTTGGCAGTTCCAACCTTTACGCTTGAATTCAGGTTTTCCTCATATCGTTCCCCTAAAGCAAGAACTGTATATTATCTCTTCGCTCATCTTCACATCCTTTTACCATTCTGAGCTCCCTCTTCATATAGGTATTGAAAATGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 3012273-3012769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHZ010000001.1 Paenibacillus apiarius strain MW-14 000000Farrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3012273 30 100.0 37 .............................. GCTGAACAAAAATTATCTCGAAAAGGTTCTGGCTGAT 3012340 30 100.0 39 .............................. TTTGTGAAAGTCTTTTCGATGCCTTCTACGAGACTTGTC 3012409 30 100.0 35 .............................. TATTATTCCTCTTCTATTTCAAAAAGATCTTCGAC 3012474 30 100.0 36 .............................. ACAACCGAACACTATACGGCAATACACTGGCTTGCA 3012540 30 100.0 36 .............................. TCGTACGGGGAATTTGATTTCCCCAGCGGGGAGAAG 3012606 30 100.0 38 .............................. TCTTCCTCGGCGGATTAATCCGCTCCTTATGCTCGTTG 3012674 30 100.0 36 .............................. ATATGTTCGTCTGTCGCCCCGACGCTCGGGTGGATA 3012740 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 100.0 37 GTTTTGAAAGTACCTATGAGGAATTGAAAC # Left flank : CCAGCAGCGCGCAGACGAACAGCACAGCGGCTGCAATGGCAGGCAAACATCGTGCATGCATCAACATCCTCCTTTGCTTGGCGGCTGTCTGCACCTCCCGGTCGGCGTACAGCCGCTTTGTTGTAAGAAGCGCCGCATGTCGGCACCAATCCGATTATACAAGTAAGCGGTTGCAAATGAGTTGCACGTGAAGAAGGCGATGTGGAAGTATTGGAGTGTTTCAATGACTACGGACATTAAAACCTACTCAAAGAGAGCATTTGAGCGGAAGTAACGTATCAAACATGTGCACAAGATTATTGATCTAAAATCTGTCGTCGACCCCCAATAGCGTAAAAAGTGCCGGGGATCGACGACACTTTGTTTTTCAAAGGAAATTGGAGTATCACCGAGTTACAACGAGATTTAGGGGAGAAGTTGAGACATCTTCTTTTCTGTGAAAACATGGGGAGGAGAATAAGTTTGATTTGTCGAAAGCTTTAGGGACAAGGTTTTTTGGG # Right flank : CCTGCTTGCTCTTTTTGACTTTTTAAAGGCGACAGGTGAGCTTTTATCCACTTAGCATTTCTGCTAAATAAGCTATATTGCTTCTTCTGTGCTGATAGTCCAGTCTTCGTTGGATTCTGTCCAATGAAATAGCAAGGTTATAGCTTGGCAGAGAGGTTCCATTGGAATTCGTCCAGTGGATTTGGACTAATTAAGGGGAAATCACGACAGAACTGTGAAATCCGCTGTAAGAAATACAGTCAAAGTGCGGTTTGGACGTGAAGTCTGTACATTTCACTGTACGATTTCCAGTGGAATATGCATGTTACTTTACAAGAGTGCTGCAACATGCGAGCGGCGTTCCCTATTTATCCGGCATTCCCACAGTTAAAATGGCTACTTGCTCTGGCGGTTCCGCTGTGCTAAGATAATGGTAACTTTTACAGAACGGAGGGGTTCCCCATGATTGATAAGGCAGCCTTCTTCCTTTTCGGAAGAATCCGATTGAACCTTTTTGACAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAAAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 4 4202604-4202769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHZ010000001.1 Paenibacillus apiarius strain MW-14 000000Farrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4202604 32 100.0 34 ................................ CGAAAGATAAATACAACGAGCTATCAGAAGCGAA 4202670 32 100.0 36 ................................ CGCAACGGGGAAGCGCTCCAGCTTTCGGCGAACCTC 4202738 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 100.0 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AAACCCTCCCATAGGCAGAGAGATCTGAAGAAAAAGTTTCGTTTCTATTTATCACCTGAGGGGTGATTTTATGAACATTCAATTTGGACAATCTAAAGAATTAATTGTACGACCCATGCAGGACTTAACCGGAGAACAGGAGTATGTTCCTCTGGACATCGATGTCTCACCATTTGACAACTCAGGTATGAAAAAGGAAGGCGTGTCCCGCGCGTATAAAGGGTACTATTATGAACCTTTAAAATGTGGTAATTTGTAATTTGAAGATAGTAGGAGGTAAATATAGATGATATAGATGCAGCATTGGTTCATTCATTCTCTAGTGCGAATGGATAGTGCACATGAATTTACGGGGGGATTCGCACCAACATTCTTCCAAAATACAGGTGTTTCCTCTTGCTTTATTTGTAATTAATTTAAGATTTGACTTTTTCAATCGTTTAATTGATTATTTTGCTCGATTATATAGCATAAATTGAGAGTTACTATCAAATTTCGCT # Right flank : TGGGAAGAGTGTAGAATCGGTAGGGGCGGACACCCAACGTTATACATATAGCGTAGAAAGGTGTCTTTTTTTGGAGAGACGAATCCGACTGAGCGGCGGCAGCAAATGATGCAAGTGGCGGCAGATAAGAAGCTGCTCATCGATGAGGCCATCTAAAGTTGAGATGGGCTCATATTTACCTTGTGGAATATCAGAAGAGAAGGAAACTGACAAGTTAATGTAGGGGAGTACATGTGAAGAAAAGTCTTCTTTAAAAGAACATATGGGCAGAATTTGGACGTTTATTTAACAGGTTACGTGTATCATAGGTGAGATTCGTACTACAGTCAAAGGCTGCATTGAAGAAATAAGTAAAAATCCTATGCGAATTGTAAATCGCCTATGCATTGATATATAACAACAAAACAGAAGAAATTTCAGAAGAAATTTGTTTGAATTCAAACTGTAAGGCAGTTAGAGAAAATTTTTTATAGTGTATAAACTCAAAAATCCAATCTATT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 4205926-4206540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHZ010000001.1 Paenibacillus apiarius strain MW-14 000000Farrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4205926 32 93.8 17 ..............................GG TAAAGTAATTGCCCTCA Deletion [4205975] 4205975 32 100.0 36 ................................ TCAGCAGGTTAGTGGGGCGAGTTTTTATGATTTGAG 4206043 32 100.0 33 ................................ GAGTAATGCCCAACCAACGTAATCCCAACCGTA 4206108 32 100.0 35 ................................ AGCATTTTCAGAGAAATACCTAAGGCAGGGGAGTC 4206175 32 100.0 34 ................................ TTGATGTCTGGATACTCTTTTCCCACTCGGTTAC 4206241 32 100.0 36 ................................ CATTGCAGGCACACCCGGTTACACCATAGCGGAGGG 4206309 32 100.0 34 ................................ CGTTATCTCCCCGAAAGGATTCGTTTGCGTTTTA 4206375 32 100.0 34 ................................ CGTGAAATGGGAGCATTTGATAAATGGGATTAAA 4206441 32 100.0 36 ................................ ATTGAATCGCTGAAGCGTTTCGTTTCAATGTGTCAG 4206509 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.4 33 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TTTGTAGATTTTCCTAAAATTGAGATCAAGAGAGGGGAGGAAATTAGTGATAAATTTGCACCAAGAGCAATTATTTAATGAAAGAGTCAAACGGTTAGGAAGAGATTGTGGCAACGATCCGGAGTTAGCCATATTTTAGAACTTATCTCAGGAGAGTTAGCGTCATAGGAAGCAAACGAAGCAATCTACTTTGGCTCGCGGTGAAATTGATTTTATATCAAGTATGTATTATCGTGTAAGTAAAAGATGGAAAACTGATTGTATCTGAATGATACTTGCTTATGTTCGAATGTTGATGAGAAAATCATCCATTCATTCTCCGGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCAAATTAATGCCAATATGTGTAATTTTAAAGTGTTGGTAGTTAACGTTTTATCATTGGGTGATTGGAAACATTGTTTTTATGAACCCGTCGATCATTTTTATGTAGAAATTTGACTTTATTTATCAAAATTCGCT # Right flank : TTGCTAGCCCAAAAAGGTGAACAAAATCAAGCAAAAGTCGCATCCAACTCGCATTCGTGGACCGCTCAAGCGCACATTGAGCGTCGCATCTTGCACGGACGCGTAGAAAACATTATGAAACCAAAAAAGCATCTACCCCCGTGTCAAAAGATGACGCGGGGGCAGGATTCTTGTCTTTTTTTGTAGAACATATGTTCCCTGACAGGCTGTTGTCACTTTCTTCAACCATAATAGAATTTATAGTATCAGTACGAAGGAAGGTAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCAAATGTGGTGCCATATTGGCGAATTTATCGGCTTTTCTCTGCATTGAAGCGGACTGCGCTGGCAAGCATCCCGATCATCGTTTATTTGATGTGGTTGCCCCAATGGAAGTGGATCCTATATGTTGCTGCCGCCTATCTCTTGTTTCATTGGAGCAAAGACGTATTCTATATCATATATGGAGTTC # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 4218336-4219904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHZ010000001.1 Paenibacillus apiarius strain MW-14 000000Farrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4218336 32 100.0 33 ................................ TTTCACTTGCTCAGAGTCTGTCATATCCGTCCA 4218401 32 100.0 36 ................................ TGTAATACAATATGCTCATTCAGCAAACCAATGCTC 4218469 32 100.0 36 ................................ AGCAACTGGATCAGCTATTTGTCATTCGGGGTCAAA 4218537 32 100.0 38 ................................ CAATATATAGTATACCATAATGCGGAAGATTATTAACT 4218607 32 100.0 34 ................................ CCTGTAGTAAATAACGATGATCCAGAGCGTATAC 4218673 32 100.0 34 ................................ ACAAATAAGAATCGCCGTACAGAAGTCATTCGCC 4218739 32 100.0 36 ................................ ACCTTGGACTTGCATTGAACCCTGATATTTTTTAAA 4218807 32 100.0 36 ................................ TGGTGAGCTTAACAAAGCCCTTAAAGATTTAACCAG 4218875 32 100.0 34 ................................ AGATGATTGATGACGGCTGCTGCGCGACATCGAG 4218941 32 100.0 33 ................................ TGGATGCCGCCAGCGATAACATCAAATGCGCCG 4219006 32 100.0 33 ................................ TTTAAATTCGGTAAAGAATTCCCTATCGATTTG 4219071 32 100.0 35 ................................ TCGGTTTCTTTCGCACAATTAAGGGCCTTTTATGG 4219138 32 100.0 34 ................................ AATAACGTCTATTCCAAGGAATTCGAGGAGCTAA 4219204 32 100.0 33 ................................ ATAGCTAGTCCAACTGTTTAGATGGTAAGCGTT 4219269 32 100.0 34 ................................ TCCAGACTCTATGATTTTTACTAACATCTTCAGC 4219335 32 100.0 37 ................................ TCGTTTGTTTGTCAGTAGTAGTATCGATGGATATCCC 4219404 32 100.0 36 ................................ CTCATATATATTCGGCGAGAACAGAATCATTATAAC 4219472 32 100.0 35 ................................ CGGTATAGGTCGCCTGTAATGACGCCTTGAATGTC 4219539 32 100.0 36 ................................ ATCCAAGACAATACCGTGTACAAGGCGACATCTCGA 4219607 32 100.0 34 ................................ TATATGGACCTGTCAGGTTTGCGGCGAAGATATT 4219673 32 100.0 34 ................................ GCAATCATCAAGAAGGTGAAGGGAGCATGATTGA 4219739 32 100.0 35 ................................ CTCAAGATCGGCTACGACAAGTGGTCGGCTATATA 4219806 32 100.0 35 ................................ AAGGCGTTTGTGCTCTCGGACATGGACACAAAAAC 4219873 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ====================================== ================== 24 32 99.9 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTATGGAAGTAGGTGTTTAGATTGCTAGTGTTAATCACATATGATGTAAAGACAACGACCAGTGCGGGCCAACGAAGGCTGCGCAGAGTCTCAAAACTGTGCCAGAACTACGGCCAGAGAGTTCAAAACTCCGTCTTTGAATGTAATGTAGACGCTGCTCAATTCGCCAGCCTGAAGATTCAATTGACGGATATTATAGATCAAAAGGAAGACAGCCTGCGCTTCTATCAATTTGGGAACAACTATAAAAACAAGGTTGAGCATATCGGCGTGAAAGAATCTATTGATATGGAAGGGCCACTAATTATCTAGTGCGAATGTATAGTGCACATGAAATCCCCGGGGGATTCGCACCACGTTTTTTCTATAATTATAGGTAAAGTCCATTTTATGGTTTGTTGCAAAATGAAAAAGACCTATTTTTAGCTTGATTCTATAGCTCTTTTGATTAGTTACATCATATTAAGAACGAAATGTGATTTTCACAATCATTTTTCGCT # Right flank : TATTTTTCTCGTATTCATTTACACTGAGAATTGTTGAACGTGCTCTCCGACCACGTAATTAAAAATGTGGCTTTTATGGATATGGGTTGCTGTCATGCGCACGTACCCGGCAGGAAAAGTCTATCTGAATCAGATCTCTCTACCGGGTATGACTCCTAATATAGCGCCATCTTTATTCCTTCGCCCTGCTTATGTCAGAGCATCGCCGTTTTTTTGATGATGCGGACAAAAGGCTTGCATCATGGCAACGGTCTCTCTGTCCATCTCCTTATTCCGCTTCAGCAATCCATCCGTGACTTTTTCAAAGTCAGACGAATTCATATTTTGACCAAATTTGTACTTAGCAGAAAGATCGTGAACGGTAACACGGACAACGGAGGTACTTTTAATCTGTCCGGTATAATCAGGGTCCGCCGGATCGATCGGGTCATAGCCTCCCTCTGGCTGAAGCTTGTGCATAAACGCGGATAGCGCCTTGGCTTTTTCCGTAAGGTCCGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 4961541-4961778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHZ010000001.1 Paenibacillus apiarius strain MW-14 000000Farrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4961541 32 100.0 37 ................................ ACATGAGCCAGACGGCCCAAGAAGTAATGATTGAGGA 4961610 32 100.0 36 ................................ TCTGATATCTCCCGTAGCACCCCATAGACCAGCACC 4961678 32 100.0 36 ................................ CGCGTTCAAGCCAGTATGTCGGCGCACCATGCTTGT 4961746 32 96.9 0 .........C...................... | G [4961764] ========== ====== ====== ====== ================================ ===================================== ================== 4 32 99.2 37 GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Left flank : CCGTTCGATATGGAGGAGATTATGGCGTCGTTCCTGGCTTCGTTCCTGGCTTCGTAGGGGGCAGCAGCGGTTTGTGTGTAACATCTTCGTGGAACGCAGGAAACGGTCGGAGAGATTAGGGGCCGTCCCATTTCTGTCCTTTCTATCATTTACTCCTATTTGTATTTGTGAAAGTCAGCTTCCTGATTTGGATTTTTGTGAGGCCAGATAACTTGAAAATATTTGCTTGTGATATACTGAGAAAGACATGAGACGCGGCTTGGTGCAAACTAGGGAGTATCAAGATATAAAAATGAAATAAAAATGCTGAAAACGGCCAGGTGCGAATGTGAAGCTCACATGAAATCCCGGGGGGATTCGCACTAATTTTCTTGACATATTATCCAATAAAGTTGATGGAAGCTGATTTGTTGAAGTTTATTTCAATCTAATTTGCTCATTTCCTATGAATTTTTAGTAAGAAACTGATTGCTTTGTTATATCTTATGCTATTTTTCGCT # Right flank : TTAAATCACAAAGAAATCAAAAAGAGCGTTTTAGCCCATGGACAGGCTTGAAACGCTCTTTTTGTTGTCTAGCAAATTGATGTGCAGTGAGTTCTGTCACAGGCGGCATCATATCAACCAAGCTATGATTCATCTTAGAGAGGTGTTCAAAAAGCCCGCTTTTGATCACGAAGAGATGCGGGAAGGAACTCGGCATCGAATCTTGCATTCACTCTTGAAGCCCGCTGCTCATGTAGTCTTGCCTACATTCCGCTGCTCCTTCTTCGAGTTCTTGCAACTTTCTCGGTGCTGAAAACCGGTTTTTTGAACACGCAATTAAAGTGCAAAAAATTCAACCTGATAAAAATTGAAAGAAAACTGAGCGGAGATCAGGGAAAGAGGTGCGATTCCTCTACAGGCCCTAGCTACTGTGAAGCGGACGAAATCCCATTGATGTCACTGGAACCAATTTCCGGGAAGGCGGGAAAGTAGAATGATGCCAAGTCAGGAGACCTCCTCTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //