Array 1 291275-293404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033598.1 Pasteurella multocida strain CQ7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 291275 28 100.0 32 ............................ TGTTGCGGTTCTCGTATGTTTCACTTCAATAA 291335 28 100.0 33 ............................ TAAAAAACAGATTAATCTTATTATCAAATTTTT 291396 28 100.0 32 ............................ AGTCAATATGATAAGTCATGATAAAATTCCAT 291456 28 100.0 32 ............................ TGCGTTAGAAGATGCTTGGAAAAAAGGCTTAT 291516 28 100.0 32 ............................ ACCTAAGAATAAAGCGGTAAATGTAATCAGTT 291576 28 100.0 32 ............................ AAATTGCATTACGAAAATTAAGGTAGTCTTGA 291636 28 100.0 32 ............................ TAGTTTATTTATTTTACGAGCCTTAACAGCGA 291696 28 100.0 32 ............................ GGATTAAACGTGCGTTATGCACAACGTGAATT 291756 28 100.0 32 ............................ CCTGCTCGCATGGCGGTTTCAATTGCAAATAA 291816 28 100.0 32 ............................ GAGTAACTCAATGGCTTGTTGGTGATCTGTGA 291876 28 100.0 32 ............................ AAACGTATATCTGCACATATTGAAACGCGGCA 291936 28 100.0 32 ............................ TTCACAAAGCCACCGTGCGAATGTACTGCGTG 291996 28 100.0 32 ............................ TGTAAAACGATTCGTCCAAGGTCGTTTTCAAC 292056 28 100.0 32 ............................ AGTTATCCACTCTATCTTCTTGCGTGTAATCT 292116 28 100.0 32 ............................ GTGCTAGAATCAAGCTCAACCTCGCCACTTTG 292176 28 100.0 32 ............................ AAAAAATCTTAGGGATCACCGCATAATGGAAA 292236 28 100.0 32 ............................ TTGTCAATTTTGTTTTTCTCATAAACTCTTGA 292296 28 100.0 32 ............................ CTCTTTAATATATCTATCAATCACAGCAGAAA 292356 28 100.0 32 ............................ GTGGTGAGCTTAGAAAAATGGCAGAAGAAGGC 292416 28 100.0 32 ............................ TGATATTACAGGGCAGGAGGGAAAATTGATTT 292476 28 100.0 32 ............................ ATAAAGTTTCCCACGTTCAAAAATCACGTTGT 292536 28 100.0 32 ............................ CGAACAACAAAGCAGGATATTGCACACAAATT 292596 28 100.0 32 ............................ GTCTGGCGCATAAATGAAAAGGTTTTTAAAAT 292656 28 100.0 32 ............................ AAGCTGTTCGAGCGGTGGTACTGGGTGATAGT 292716 28 100.0 33 ............................ CATCAAGACTACCGATTTTTTCAATATCCATAC 292777 28 100.0 32 ............................ TGTTGCGCTGATATTGTTCGTTGCGTTTCTAG 292837 28 100.0 32 ............................ ACACGTCTGCGTTTCACTTCTGCCGGATTATG 292897 28 100.0 32 ............................ TCACGACCCATATGACAATCTTGTGCGCTATT 292957 28 100.0 32 ............................ GTACTTTGCCGCCGATTAATAAAATCATCTGG 293017 28 100.0 32 ............................ AATTTCCGCAGCGCTCAATGGTAACGCCCAGT 293077 28 100.0 32 ............................ TTCCCCGCGCCGTCATGGGAAATGAAAAAGAG 293137 28 100.0 32 ............................ AAATACGCTGTCATTCTTAAACGTGAAAGGGA 293197 28 100.0 32 ............................ AGCACACCAGCTTTAACTAATGAATCAAGCAG 293257 28 100.0 32 ............................ GTAGCCATCGGGCTATCTAATAACGGATGCAT 293317 28 100.0 32 ............................ TAGTTTGATTACAACCAATCGTTGTCCCTTGT 293377 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTATTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCACAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATACATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1516788-1515741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033598.1 Pasteurella multocida strain CQ7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1516787 28 100.0 32 ............................ ATATGCACCTTCACAAAAAGCAATGACTGGTG 1516727 28 100.0 32 ............................ GACCGCGGCATTGAGAGTGTCGTTTTTCGGGT 1516667 28 100.0 32 ............................ ACGTTATGGTAATTGCTGGCTAATGACACCAG 1516607 28 100.0 32 ............................ AGTAACATAAATTCTCCCTCTGTAAATAACGT 1516547 28 100.0 32 ............................ CTTTGTTAGTTTTCTAGTGAGCCAATCACTAA 1516487 28 100.0 32 ............................ TTGAGAATGTGAGTTAAACACTTCTACATTTT 1516427 28 100.0 32 ............................ CAAAGCGCGTGTTATTTATAATGACTTCGATG 1516367 28 100.0 32 ............................ AGCAATCACCAAAAAACACGCATTGCGGAATA 1516307 28 100.0 32 ............................ GTTCTTGAGTGTCTAAGCCGTCTGTTCTGACG 1516247 28 100.0 32 ............................ GGAAGAAATCAAAAAAGGCGATCGCATTGCAC 1516187 28 100.0 32 ............................ TGACACAAACTCATCACCGCTATAAAGCATGA 1516127 28 100.0 32 ............................ TCGTAGTTTATGCAACAAAACGCAAGTTGCTT 1516067 28 100.0 32 ............................ TCGAACTTATGCAAGAGTTAGTTTTGCATGGA 1516007 28 100.0 32 ............................ AGATTCATGCGCACCGTTTAAAGCGTATGCCG 1515947 28 100.0 32 ............................ TTTTTAGTTTGAACTTAAGGGCTTATCCCGTT 1515887 28 96.4 32 ............G............... CCACGCCTTTTGAATCGCGGATTCTTTCCGCG 1515827 28 96.4 32 ............G............... TTTTGAAATTCAGCAAGCAACTTGTTATAACG 1515767 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTGCTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAACAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACGTCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATTGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //