Array 1 2654-2426 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHE02000059.1 Clostridioides difficile QCD-76w55 contig00059_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2653 30 100.0 36 .............................. CTTTTTAGAAGAATACACACTTTTTTAATATTTCAT 2587 30 100.0 36 .............................. CATGCTAAGAAGCGTTTATTAACCAGTCTTGATAAT 2521 30 93.3 36 .................TG........... CTAAAATATTAATTTCTTTATTTAAAGGATTTTGAG 2455 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 98.3 36 ATTAAACCTTAACACTACATGTATTTAAAT # Left flank : ACGTACTCTAAAGCCAATCCATTTTGCCTTACTGCTATTGAATATATATGATAAATTTCTCCTCTTGAAAATTTTTGTTTTAATTTTTCATATTTTATATATTCTAAAGCTAATCCATTTTTTCTTACTGCTTCTATATATAGACTCTTAAGTTGTTTTTTGGTTAAGTCAATATCATCCAAATTTAAGTGAGATAAACATCTCCAATATCGCTGAATCTCTTTAAAATAAAATACATAGTTTTTATTATCTATATTTTTTATAATATCCCCACCTTTTTTATTTTTATATAATATATTATATCATTTATGTTGTTTATATAAAATATTGTAAGTTAATTTATTTAGTGGTATAATTAGTTTATCCCAATCTAATTGATGTATATGTTGAAACACCTACATTATTATTTTTGACTTTCGGTTGGGATAAAAAACTTAAAATAATTGAAATTGCAATATTGTAATCATTTTTTAATTTTGAGAAATGACTTGTTTACAGTC # Right flank : AATAATAATAATATGTAATTTGAAACATAGGCAAACGTAGTTGGGGATATCTAAATTAAAAGATATCCCCAACAAATCAAATCTATCATCTTTATTTTTATATACTTAATTATTAGTTATTAACTCATATTACTTATGTGTGAATTCATCGATTATCATTTCAACTTCTGCCCTTAATACTGCTAAATTAATTCCCCTTTAACAATTCCATTCATATTTACACCTCTTCAAATCTATATTTTTGAATAACATTAGGATATTTTTCTTTATCTACTTTAAATAAAAACATTTCAATAGGTCTTACGATGATAAAAGTTGCCTTTATCATCTTTATATATAATCATATCCTCATTTGTTTCTGTATGACAAGAAGAAAATCTATAATCAAATATATCTAATCTATCCCAACAACCTAAACTTTCAAAAACATTGTAAAGTTCATTGTCGGCAACAGGTATGCTAATTCCCATAACTATATAAAATTATTGTTTTAATTTAAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTACATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 6270-5844 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHE02000059.1 Clostridioides difficile QCD-76w55 contig00059_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6269 30 100.0 37 .............................. TTGTTGGCAAAATTAACTTTAAACATTCTTTCACTGA 6202 30 100.0 37 .............................. ATCGCCCCTTGCACATTCGTAGCAGTAAGCTTGCTTG 6135 30 100.0 37 .............................. TCGGGTAAATCTTTTTCTTTAGCTCAAAGAACAGTAT 6068 30 100.0 35 .............................. TGCTATCTATTAGTTTTTTAAAACTGTTCTCTCTG 6003 30 96.7 35 .................C............ CATGCTCCACCGCCTACAACATAAAGATTTTGCGT 5938 30 96.7 35 .................C............ TTTCTTTGTTGATTATAACTATTTTACTATAAAAA 5873 30 90.0 0 ................TT........A... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 ATTAAACCTTAACACTAAGTGTATTTGAAC # Left flank : ATAAATTCTATAATTTTTTTCAAGAATCTAAAATATATTTCTCTATAAATGTTTATTTACAACTTTAAATTAGATTCTTATAATTTAATTGCTGTAAGATATAAATTATATAACTGCTCTTTAGTTAAGTTAAGCTCACCCCATCTTACATCTTTAAGCAACACTCTTGTCGCTTTACTACTTCTATGCACATCTCATAATTTTGTTTTTTTCATTTCTTAATTCCCAGGGATTTCTTTTTATCCCATTTAAACTTATTCCATATATATCCCTCTTTTCAATATTATTTTTATAAAATTTACATCATTTTTATTGTTTATATTAAATATTGTAAATTTATTTATATAGTGATATAATCAAATTATCCCAAGTTAATTTATATAGACTTTGAAATATCTATATTCTTATTTTTAATTGTTAGTTGGGATAAAAGACTTAAATTAATTGAAATTACTATATTTCAAGTATTTATTAATTTTAGGAATGGCTTGTTTACAGCT # Right flank : AACGCCAATAAAAGTGGTTCAAAAAAAAGCTATCTAAATTAACAGATAGCTCTTTTTAAATTATTGAAATCCTTTTAAAAATTTAAGATATATTTTCCTATAGACATTTCTACCTAATCTCAGGTCAACCCTTCACCTTCATTATAAATTCTTCTTTAGTAATACCTCTTTCAAAAATAAATAATCTAAAATCTTACATATTGAAGAGCAAATCTATTTTGATTAACTGCAATAATGCGCAAGTTATATATCTGCTCTTTAGTTAAGTTAGGCTCATTAAACTCCACGCACATCTCATAGGTTTATTTCTTTACTTGCATTAATTCCCATGGGAATTTTTTTATTTTATCTAAGCCTATTTCCTTCATCTATCTTTCCCCTCTTTAATTTTATTTTTATAACACTTTTATTATAGTATTTTTAATTATTTTTATATTAAGATATTTTATTTTCTTAGGTTTGTGGTATAATGAAAGCAAGAAGAACTACAATCTATTTCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTAAGTGTATTTGAAC # Alternate repeat : ATTAAACCTTAACACTACGTGTATTTGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 16748-16257 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHE02000059.1 Clostridioides difficile QCD-76w55 contig00059_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 16747 31 100.0 34 ............................... TGGGAGATTCTCCAGAGTTTTCCGCATCAGTGAA 16682 31 100.0 35 ............................... AAGTGTCTATTAACATTTGCAACAGTGTCTTCTAC 16616 31 100.0 35 ............................... GTTATATTTTTGTTGCTTCCCTTCTTAACATGGTC 16550 31 100.0 36 ............................... CCATATCTATCTTTCAAAAACTCATATGCATATTTA 16483 31 100.0 35 ............................... TAATTAAAATATTTACAAATAGAATTATAAGAAAG 16417 31 100.0 34 ............................... TGATAAAACACTACATACAAACTCAACCTCGCTC 16352 31 100.0 34 ............................... TGTTATATAAATACATATTACACAAGATATGTAT 16287 31 90.3 0 ................T............CA | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 98.8 35 ATTAAACCTTAACACTATGTGTATTTAAATT # Left flank : TTTTAATTTACCGTCATTATCCCATCTTTGCAGTGTAATAACTGATACATTTAATAATTCTGCAAACTCTTTAGGTTTATAATGTTTGCTCATATAATCACAAAAGGATGTGATTATATTAGACTATATTTGATTATATTTTTATCAACTAAAGAGTATCTCCTTATGTTTAATTTATTTTCTATAAAACTATATTTTCACATTATAAATATAGTAAATTTTTCTATTTTTTATAATTTTATTTTCATGACACTATATTTTAATTTATTATACTTTTCTCAATTATTTTTTATAATAATTGTATCATTTTTATTGTTTATATAAAATATTGCAAGTTGATTTATATGGTGATATAATTAAATTATCCCAAGCTAATTGATGTAGATATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATAAAAAGCTTAAATTAATTGATACTACTGTATTACAAGTATTTATTGATTTTAAAAATGGCTTGTTTACATCT # Right flank : CCACTCTTTGGACCATCTTTAAGTGTAAAAAAAGAGCTGTCTATCAGTTTAGACAGCTCTTTTTATTTAATAAAAATCCTTCAAAAATTCAAGATATATTTCTCTGTGAACGTTAATATCTTCCTCTGGATCAAATCCGCCATTTTCTGTATAAATTCTATCCATAAATTCTTCAAGATTTATATATTCCTGGCAACCTACTGTAAATAGCCACTCTCCATCCTCTTTTATGGCTATTACTTCTTGAGCACCTTTTTGTTCTTCTAAATATTTAATATCAAATTCTTCTACATATTTTCCCTTATCTTTTATATAATCAATTAAACGTTTATCCTGTTTTAGAACTTTTCTACACATTTCATCTGTTTGTTCTTTTACATACATAATTGCATATTTATCTTGTTTTAAAGCTTCTATACATATTTCTGGCACCTGTTTTTTTACATATCTTAAAGCAAATCCATCTTCTCTTACTGCGGTTAAACATATTTCTTCAGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 3964-3662 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHE02000065.1 Clostridioides difficile QCD-76w55 contig00065_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 3963 30 100.0 44 .............................. AATATGTATATATGCATAACCTAATAACCTAATATTTAAACTAT 3889 30 100.0 36 .............................. GAAGTTTAGTTTTTAGTTCTTCATATTTTAAAAAGT 3823 30 100.0 36 .............................. CTTTAATATAGAAGCTGTAATAGGAAAAACAGCCCC 3757 30 100.0 37 .............................. TATTCTTTCATACTCAAATTTAAAGGAAGGTTTATTG 3690 29 90.0 0 .......................A.-...G | ========== ====== ====== ====== ============================== ============================================ ================== 5 30 98.0 38 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : ATAAAATGTAAATAAATTATCGTTTAAATTTAATGAATACCCTGAACCATATTTTTCACTTTCTACTTTAGTACCTTTTTGGCCCAATTTATCTGCCAAATCGAAAATTTTAATTTCTTTATCAGCTGTAGTTTTTAAAGTTATTTCTTCTGCATTTATTGTTAAGCATTGACCTAATACACAACCCATAATTAGACCAGCTATAGTTATTTTTTTTATATTTTTATTCAATTTAAAACACCTCATTTTTATCTATTTAATATCATTGTATGTATTTTTTTATAAATTGTCAATAAATTTTGATATTTTTGTTGTTTATATTAAATATTGTAAATTTATTTATATAGTGATATAATTAATTTATCCCAAGTTAATTATTACAGTATTTGAAATATCTACATTCTTATCTTTAATTATTAGCTGGTATAAAAAACTTAGATTAACTGAAATTGCTGTATTTCAAGTATTTCTTAATTTTGAGAGGTGGCTTGTTTACAGCT # Right flank : AAGAGCTATCTAAATTAATAGATAGCTCTTTTTTTTATATTTAAAACTCTTTTAAGAAATTAAGATATCTTCCCCTATGAACATTAACACCTTTCTCTAAATCAAATCCTCCATTTTCATTATAGATTCTATTTATAAACTTTTCTTTAGTGATGTTTTCTTGGCAACCTATAGTAAATAGCCATTCTCCATCCTCTTTTATGGCTAATACTTCTCTGGCTTTTCCTTGCTTTTCTAAATATTTAACACCAAACTCTTCTAAATACTTTTCTTTGTCTTTAATATATCTAATTGCATATACATTCTGTTTTAGAGCTTTTCTACATATTTCATCTGTCTGATTCTTTAAGAATTTGCCTTCTAATTCGCTCCACTTTACATACTCAAGTGCTAAGCCATCCTCTTTTACTGCTTCAAGACAAATCTTTTTGGTTTGTTTCTTTACATATTCTAAAGCTAAACCATTTTCTTTTACTGCCTCAAGACATGTCTTTTCTGTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 5400-5106 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHE02000065.1 Clostridioides difficile QCD-76w55 contig00065_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5399 32 100.0 32 ................................ GAACATCCAAAGCCTGTTGCTGTGCCACTTGG 5335 32 100.0 35 ................................ CGTCCATCCAAGTTCTGGTAGCTTATTTCTAAATT 5268 32 96.9 34 ..............................C. AAACAAACAAATTAGATAGTCCGATTAAACTTTT 5202 32 100.0 34 ................................ TTGCCAGCTTTCTCCTTTATCTACTCCATAAAGA 5136 31 84.4 0 .................C.....AA-...G.. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.3 34 ATTAAACCTTAACACTATGTGTATTTAAACAA # Left flank : TATTTTTTTCATTTTATTTCCCTCCATATCTCCTCTATTTATATTAAACATTATATAATACATGCTATAAAAAATATGTAAAATATTGTCACTTAATTATAAATAAGGGAGTCTATCTATTTATATAAGTTTTTTATAAAAAAAACTAATCTATTTTCTTATTTTAATAATAATTTTTTTACCAATACATTATATACAAAACAATTTATCTTATAACCTCTCTTTACCAAAAGTTGCCTTTTTATATAATACTAACTTTAATTATATAATATGTATTTTTTTCTAAATTGTCAATATTTTTAATAAATTTTATTGATTATATAAAATATTGCAAGTTGATTTTTTTAGTGATATAATTAAATTATCCCAAGCTAATTGATGTAGATATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATACAAAAATTAGATTAACTGAAATTGCTGTGTTACAAGCATTTATTGATTTTAGGAATGGCTTGTTTACAGCT # Right flank : GTTACCTATAACTTAGGTAACTTCTTTTTATTTATATTATTTATTATAAATGTCTACATAGACTCCTATGCTTCCATTTTTGATTTCTACTTTCTTGCCATCCATTTCTAATGTTTGATCTTCGAATTTATCCTTTACAATATTAAAAAGTTCTTCTCCTTTTGTTGGTAGAAGTAGTTTAAAGCACTCCTTCACAGAACTATCAAACTCTGTGGAATTTGAAAATAAACCAAATCCAACTACATTATCTTCTGCATTTACTATACCCATTTCATTGAATCCATTCCCTTGATTTGATTTCTGCTTATATACATATGTTGTGCTTCCATCTTTTGTCCAACCTAAGTCTTCCAGTTTATTTCTAAACACCTCATTACTAACACTCAAATCAGCATCATTCTTATCTTCTTTTTTATCCTGGTCCTTAACATTTATAGCATTAATTTTAATTCCATTATTATCTTCTTTAAATCCTAAATAATTAACTAATATTTCTTTTG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 7271-7424 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHE02000065.1 Clostridioides difficile QCD-76w55 contig00065_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 7271 23 100.0 43 ....................... ACTTGGCAAGAGTAGTTTAAAACACTCTTTTACAGAGTTTAAA 7337 23 100.0 42 ....................... TTATTTCCACTTTCTTGCCATCCAACTGTAAAGTTGTTTAAA 7402 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =========================================== ================== 3 23 100.0 43 TACACATAGTGTTAAGGTTTAAT # Left flank : TTATAAAAAAACATGAATTTAGTAAAGTTACACAAGTCGGCAATGGCGGAAATGAAAATGTTTTTAGAGAAATTTTAAATATATTAAAGGGAGAAGAGACTCCTGGAACTATTACAAATGCAGAGTTTAGAGAGAAGTTGCCTGAACTTGGCTGGACAAAAGATGGAAGCACAACATATGTATATAAGCAGAAATCAAATCAAGGGAATGGATTCAATGAAATGGGTATAGTAAATGCAGAAGATAATGTAGTTGGATTTGGTTTATTTTCAAATTCCCCAGAGTTTGATAGTTCTGTGAAGGAGTGTTTTAAACTACTCCTACCAACAAAAGGGGAACAACTTTTTAATATTGTAAAAGGAAAATTCGAAGACCAAACTTTAGAAATGGACGGGAAAAAAGTAGAAATTAAAAATGGAAGTATGGGAGTCTACGTAGATATTTATAATAAATAATATAAATAAAAAGAAGTTATCTAAGTTATAGGTAACTTCTTTTTT # Right flank : TAGCTGTAAATAAGCCATTTCTAAAATTAAGAAATGCTTATAATACAGTAACTTCAATTAATCTAAGTTTTTTATTTCAACTAACAATAAGAAAATAGATACTATGTCAATTAACTTGAGATAAATTAATTATACCACTATATAAATCAACTTACAATATTTTATATAATCAATAAAAATGATATGATTATTATAAATAATAACGTAATTTAATATATTGTATAAAATATAGTGTTATAAAAATAATGTTGAAAAGGAGATGACTAAGTGAGGGGAATAGATTTAGATTGTATAAAAAGATGGCCATGGGATTTGAGATTTGCAAAAACACAAACTTACGAGATGTGTATAGAAGCATTAAAAAGAGATGGAATGTTACTTGGACATGTTAAATTCGATGAACTTAATTTAACTAAAGAACAGCTTTACAATTTATCCCTTATTGCAGTAAAACAAAATGGGTTGGCTCTACAATTTGTAAAAGAGCAAACTCCAGAAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACACATAGTGTTAAGGTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 4 17009-16223 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHE02000065.1 Clostridioides difficile QCD-76w55 contig00065_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 17008 29 100.0 37 ............................. CCAAGCTATTATTTTCAAGCTGCATCCTGCTACTTAT 16942 29 100.0 38 ............................. CTGGTAGCCGAGAATACGATTTTTACAGATATACAAAG 16875 29 100.0 37 ............................. CTCAGTTTCTATTTCTGTTCCACCCTTTAGGTCAAGT 16809 29 100.0 20 ............................. TGGGATAACAATATAATATA Deletion [16761] 16760 29 75.9 37 T..TC..T.........TAC......... CTAACGATTTGTATTTATTTTATTGTTACTTACATCA 16694 29 96.6 36 .................T........... CGCCAATGCAGAAAGTGAACCTCTGTGCAATATAGC 16629 29 89.7 93 ...T............TT........... CTCAGCTAAACCTACTATCTTTGGCTAAAATATAGAGATTAAACCTTAACAATAAAAAAGAAGCTTCTATAGAGCCTCTTGAAGCTTACAGTA 16507 28 86.2 33 .....-...A......TT........... GGAGATGTTTTAGAATATGATACAATAACAGAA 16446 29 93.1 28 ...T............G............ TTAGCAACTACACAAAGATATATAAGAA Deletion [16390] 16389 29 93.1 43 ...............C.T........... TAGGGGTGGAGGGCCGTTTCTTGAGTTCACCAAACCGAAACAT 16317 29 96.6 37 ..C.......................... CAACCATTTATCTCTATATCCTGTCATTATTTTATTA 16251 29 93.1 0 ................TT........... | ========== ====== ====== ====== ============================= ============================================================================================= ================== 12 29 93.7 40 ATTAAACCTTAACACTACGTGTATTTAAA # Left flank : TTTTAATGACGAATTAGATATCGACATTGTTAAATTGCAGTTGGAAGCTATAAAAGAAGAAATACAAGAATCTGTTTTAAGAGGAAATTTTGACATTAAAGATTACACAAAATTTTATATAAATGAATTAAAATTTACCGAAGTTGTTAGCATAGAAATAAAGGAAGAATTTCAAAACTTTATTGATTCTTGTACAAAGCAATATATGCCAGTTATTTTTGATTAAACCTTAATACTTTGTGTATTTAAACTAACGACTTGTATCTATTTTATTGTTACTTACATCAATTAAACCTTAACACTATATTTTTATTGTTTATATAAAATATTGCAAGTTAATTTATATAATGATATAATTAATTTATCCCAAGTTAATTGATATAGACTTTGAAATATCTACATTCTTATTTTTAACTATTAGTTGGGATAAAAAACTTAAAACAATTGAAATTGCTGTCTTGTAAGCATCTCTTAATTTTGGGAATGGCTTATTTACAGCT # Right flank : AGTTAGGATAATATTATGTTTTATATAAATACTATAATATATATAGTATTTATTAGTTATATTAGATTTCTGTACATAACTCTTAGTGGAGAAGACTTCTGGAATTTTGCCATTTTGGTATATGTACTTTATAAAACTGTAAAACACTGCTTAAGATAGCAGTGTTTTTTTATTTCAACAATATAATTTATAATATTTTATAATAATTATATTTTTATTGTTTATATAAAATATTGTAATTTAATTTATATAATGTTATAATTAATTTATCCCAAGTTAATTGATGTATTATTTGGAACATCTGCATTCTTATTTTTAGCTATTAGTTGGGATAAAAAACTTAAAACAATTAAAATTGCTGTATTGTAAGCATCTCTTAATTTTGGGAATGGCTTATTTACAGCTATTAAACCTTAACACTACGTGTATTTAAACTTTGTGTCGTCCCACATGGAGCCCCTAACCTCGAACATTAAACCTTAACACTACGTGTATTTAAA # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTACGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1288476-1289429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM000661.1 Clostridioides difficile QCD-76w55 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1288476 29 100.0 37 ............................. TCTCCATCTCCAATTAACATAAATAATTCATCCGCTG 1288542 29 100.0 38 ............................. CCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAAC 1288609 29 100.0 35 ............................. AAAATAAAAGAGTTTGAATTACCCATTTTTTCATG 1288673 29 100.0 39 ............................. TACGACATTGAATAAAATGGGTACAGAGACAATTTATAA 1288741 29 100.0 37 ............................. TTTATAAATCTTTTAATGACTGTCTCTGATGGTACAG 1288807 29 100.0 39 ............................. AAAGGAATAGATGATATGATTGCTAATGCTGAACAACAA 1288875 29 100.0 34 ............................. GGGTCTGACTTTAATATATATATATATATAAATT 1288938 29 100.0 37 ............................. TTATAAACTCCCACGACAAAATTAACTATAACCTCGT 1289004 29 100.0 37 ............................. AGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAA 1289070 29 100.0 37 ............................. GCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATG 1289136 29 100.0 37 ............................. ATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAG 1289202 29 100.0 38 ............................. TTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAG 1289269 29 100.0 37 ............................. TGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTC 1289335 29 100.0 37 ............................. CTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTA 1289401 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 15 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCGAAAGCAGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAAATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCCTAACAGTTGAAATATAAGGCATTGAGGGTATGTGATAAATGTTATCATTTGCACTACTCATGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTTAACTCTCTTAAACCATTTTCATATCCTTTAGTAGATACTTTTGTTATTTTTTAATCTTTAGTAACTTATTCTTGAGTGAATCTCTTATTTTTTCTAAGCTATTTCAAGCTTCTCAAAAAATTCTATATTTATATTCATCACACATATAATACAATCAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAACATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTGATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1497818-1498570 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM000661.1 Clostridioides difficile QCD-76w55 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1497818 29 93.1 37 ........................G...G AGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAA 1497884 29 100.0 36 ............................. AAGGAAGGTGGAAGTCAATATGCATGGGTCAAATGG 1497949 29 100.0 36 ............................. ACGAAATTAGAGTTTGAAATATATGACTACATAATA 1498014 29 100.0 38 ............................. TTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAA 1498081 29 100.0 38 ............................. TTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAA 1498148 29 100.0 38 ............................. AATAACTTGTCAATGTAGTTATATGCAACAACTTCTAT 1498215 29 100.0 37 ............................. GAATTATATATTATGAAAAAATATGGAGTCACAGAGG 1498281 29 100.0 36 ............................. TTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTG 1498346 29 100.0 35 ............................. TACTTTAGCACTAGTAAAGGTAGAATTATTAAAGT 1498410 29 100.0 37 ............................. TCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTG 1498476 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 1498542 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 96.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : ATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAATGCTTGAAATATAAGGTGTTGAGGGTATATGATAAACTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGGGTAAA # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTATTTTAAGATAGAAGATACTAATGCTAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGATCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATCTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATCATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1607477-1607770 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM000661.1 Clostridioides difficile QCD-76w55 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1607477 29 100.0 36 ............................. CTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGT 1607542 29 100.0 37 ............................. TTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATG 1607608 29 100.0 38 ............................. ACATATAAAACTTTCATCTTCTGTTAATTCATTAAAAC 1607675 29 100.0 38 ............................. CCATCTTTTGTTGTTTTACATAAATTTATATTACTTAC 1607742 29 89.7 0 ........C........C.....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 97.9 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACTATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCTATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1700155-1700511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM000661.1 Clostridioides difficile QCD-76w55 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1700155 29 100.0 36 ............................. GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT 1700220 29 100.0 37 ............................. TTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTC 1700286 29 100.0 37 ............................. AGTACATATAATGAGTCTTTAACATCAGTTATGAAAG 1700352 29 100.0 36 ............................. GATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATC 1700417 29 100.0 37 ............................. TATTTTACAGATGAACAATTACAGTTACTTCTTGAAT 1700483 29 82.8 0 ......T.........G....T.CA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 97.1 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATTATAGGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAATAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTGATAAATTGAAGTTTAACAGTTGCAATATAAGGCGTTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGAAAATACTCAACTTATTTTGGG # Right flank : TTAAATAGAAAAAAGAAAGCACTTACTTAAATAGTAGGTGCTTTTGTTTTGCTCAAATTACTTAATTATAAAGTTGCTAAGTACAACTTTTTAGAATTATACAATATAAAAATGCACTAAAGTGATTGATTTTGCTCAAGTTGGTCGGTTGAGTAAAATAATTAGAAAAAAATGTTAAAAAACTCTTGAAAAGTGTCGCGATACAATGTATAATTATATTATCGCGATACAGAAAAGAGGTGAAAATTATTACTGATAGCAGTAGAGCAGATTACTTCAAGCAGAGACGACAGAATAAAAAAACTTTTAGTGTTCTACTAGATAGAGAGAAAGTAGAGAAAATTGAAGAACATTTAAAAAAGCAGAACAAGACTAAAACTATTTGGCTTGAAGAAAAGATTAATGAAGAGCTAGAAAAAGAGGAATAAAAAATAAGAGACGTTCTCCCCGACCAAAGATTGAACATCCCTTATTGACGTATATTATATACACTAACTATA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 1702376-1702665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM000661.1 Clostridioides difficile QCD-76w55 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1702376 29 100.0 37 ............................. CTTTGTAATGGTAGTGTATTTAAGATTGAAACATCAA 1702442 29 100.0 36 ............................. CAACATTAGTAGTTGTCTTTATACACATAGCATCAC 1702507 29 100.0 38 ............................. ACAGCTCCCAAGACATACAACGAATCTGTAACATCAGT 1702574 29 89.7 34 ................G...T.......A GACTTATTTACAGCTTTATTTGCTAAATCAGAAG 1702637 29 86.2 0 ................G....C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 95.2 36 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : ATTGCAGGTGAAAAGAAGAATTATCATGTGGTTTATAAGATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTAGTTTTGGGGGGATTAATACAATGCATGAGAATTTACTTGATAGTATAGATATTGAAAAGAGAAAAGAAGAATTTAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGTATAGTATATAAACTTTCTTAGAAAAAATTAGAGAAAAATAATTAAATAAATAGATAAAGCACTTGGATATTTCACTGTTTCAAGTGCTTTATATGGTAAAAAATGGTATAATAAAATATAGGAATTTTGCAGTGTTCGATTTTTCTACTCAAGTATAGTTTAACAATTGGAATACAAGGCATTGAGAAGGTTTGATAAGTGTTATCAATTGCACTATTACCCGCTCACTGCAAATTTGAGAAAGTTATATGTGTGTAAGTCTTGGAAATACACAATTTATTTTGGG # Right flank : TTAAAAATAATTAAAAAACACTTACTAATGTAGGTGTTTTTTTATTGAAAGGAAGTGATTATAATGTAAAAATTTTGAAGATATAGTATAATATTCTTATAAAATATAATTTAGGGGGATATTATGAGAGAAGGAAAGAGAAGAAGAGGATGTCTATTTTGGTTTATTCTTATTATTTTATTTTCTGGAGTTGTTGGAGCAATAGCAGGGAACAGTACTAATAATGAAAGCACTGAAAAACAGAAAGAGGATTTAACTAAATATATTGGTGAAGAAGGTAGTATAGGAGATTTAAAATTAACTGTTAATAGCATTTCAAAAGCTAGTGAAATATCAGTAGCATCTGGTTATTTAGCATACACTCCAGATAGTGGCAAATATGGTATTATAAATTTAACAATAAAAAATCAAACTAAGGAAAGCCAATCTTTTATGCTAAATTCATTCACATTAATAGGACCAGATGATTCAAAATATGTTCCATCTTTATTGATTGATGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 1839951-1841166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM000661.1 Clostridioides difficile QCD-76w55 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1839951 29 100.0 37 ............................. TTAATTTATCTATAATTTAAAACGGTGAATTACATAT 1840017 29 100.0 37 ............................. TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA 1840083 29 100.0 38 ............................. AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA 1840150 29 100.0 37 ............................. GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG 1840216 29 100.0 37 ............................. TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC 1840282 29 100.0 37 ............................. TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA 1840348 29 100.0 37 ............................. GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG 1840414 29 100.0 38 ............................. TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT 1840481 29 100.0 36 ............................. AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT 1840546 29 100.0 37 ............................. ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC 1840612 29 100.0 37 ............................. TTTAGAAACAACAGAATAAACATAATATATAAGCATA 1840678 29 100.0 36 ............................. CTATATCGCATATTCTTTTATCTAGGTCTTCTTTTC 1840743 29 100.0 37 ............................. ATAATCTTGTTATAGACTTTACTATTGTTGTAATAGA 1840809 29 100.0 35 ............................. CTTACCAGACCCTGCAACACTAAATGACTTACATA 1840873 29 100.0 37 ............................. TCATCAGTATTTGTAAAATGCTTTAACTTATCATAAT 1840939 29 100.0 39 ............................. TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT 1841007 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 1841073 29 82.8 36 .C.............CA..A...A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 1841138 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ======================================= ================== 19 29 98.7 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAAGAGATGTCCTTTAAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTGCACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 2190331-2189705 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM000661.1 Clostridioides difficile QCD-76w55 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2190330 29 100.0 36 ............................. TAGGATTGGTGTGTTACGACCACACAACGCTGGACT 2190265 29 100.0 39 ............................. AGTGAATTTGGCGAACTCGATATAGAGAAAAAAATAAAG 2190197 29 100.0 37 ............................. GAAGTTTTTAATGTTGTCGCGACTCTTGCTGTTGCTT 2190131 29 100.0 38 ............................. CTGCTTTGGCTTTTGGTCGTATAATGCTCCTTATAATA 2190064 29 100.0 37 ............................. TTAAATCTAGCATCAGTCATTAGTATAAAATTTCCTC 2189998 29 100.0 38 ............................. AATAAAAAAGGTATAGTTTTCTTCTTAGTTACTGCCAT 2189931 29 100.0 37 ............................. TGTTATAATATTAAAACACAACTAAAATATACAGAAA 2189865 29 100.0 36 ............................. TCTAGTTTTTTCTCTTTAGAAAAAATAAAAACAACT 2189800 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 2189733 29 89.7 0 ............T......T...A..... | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 98.6 37 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : GTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGAATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 8 3232045-3230431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM000661.1 Clostridioides difficile QCD-76w55 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 3232044 29 100.0 36 ............................. TTAAAGGTGCAAGTCTTAATACTTGTTACATGAGTT 3231979 29 100.0 37 ............................. AACAAAGAACCATTTGAATCACGAAAACTAAAAAACA 3231913 29 100.0 38 ............................. TTATTAACCTTATCAGAAACCTGACCATCCCAATTATA 3231846 29 100.0 36 ............................. TCCATTTGTCTAATGCTTCTAACTCTTTTTTTATAC 3231781 29 100.0 38 ............................. TCCAAAATGGGCTTGGAGTTAAGAGTTGTATAAGAAAC 3231714 29 100.0 38 ............................. TAATTACACACTCCCTTTTAACGAACATATTTTAGATT 3231647 29 100.0 41 ............................. AGACTCGACATAGAATCGGTTACTAAATCCGAGGGTTTCAG 3231577 29 100.0 37 ............................. ACTAAACCTTTTTGTTTACTTTTATTTCTCATTTTAC 3231511 29 100.0 37 ............................. CCGGATTTTTCTGCTTCGACTGTTGTTATTGAGACTT 3231445 29 100.0 38 ............................. AGTAATTCCATGCAATCTTTTATATTGCTTTTTAACCT 3231378 29 100.0 36 ............................. AGATATACAAGGTGAAAGTGTTGAAATTTCAATCTT 3231313 29 100.0 36 ............................. ATTCTTAGATGTTATAATTTGTGTTGCATTTAAATC 3231248 29 100.0 37 ............................. ACAATATTATTGTTCATTTCATTTAATAATTCTAGTA 3231182 29 100.0 37 ............................. TTGTTTATACCTTTAATCTTTAAAATTAAATATAAAA 3231116 29 100.0 37 ............................. CATTGTATACTAAGCTTGATATAGTGCAAAATGAAAC 3231050 29 100.0 36 ............................. ACTAATTGGGTTAAACAAATGGATATAACTAAATTA 3230985 29 100.0 37 ............................. CCAACCCTTCGCACGAATCCGTGCGACGAAATATAAA 3230919 29 100.0 37 ............................. TGTAAAAATATTGCTTAGCATATTGATATCACTAACT 3230853 29 100.0 37 ............................. ACAAGAGGTTTTTCAGCAATATATGTACTTCTATAAT 3230787 29 100.0 38 ............................. TCATCAATATTAATTTTGGGAATATCAACATTTTTTGC 3230720 29 100.0 37 ............................. GCGATAAGAGATTCGAGTCTTTTTACTGGGCTTAATC 3230654 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 3230588 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 3230523 29 75.9 35 A...........TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 3230459 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ========================================= ================== 25 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATGCACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAGAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 9 3476272-3475649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM000661.1 Clostridioides difficile QCD-76w55 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3476271 29 100.0 39 ............................. ATTCCGGAAAGTACTTTTGCTATTTGATTCATTCTACCC 3476203 29 100.0 37 ............................. TTCACTAATTTTAGTTACAACTATTACAAGTCCAGCC 3476137 29 100.0 36 ............................. TATGTGTAATGTATTTTAATGTTTTCTAGCAACAAT 3476072 29 96.6 37 ................A............ TTTATAAATTCTATGAATAATTTTAAAGAGAGGTTTC 3476006 29 100.0 36 ............................. TGTACATTTGACATAGAAGCTTCAAAATCCATCCCA 3475941 29 100.0 37 ............................. GTAACAGCACGAATGATGGCACAGACCTATCTGCAAT 3475875 29 100.0 39 ............................. AGAAGTACACTTACAAGTAAGATAAAAGACCCAGGTACA 3475807 29 100.0 36 ............................. TCTGTAGCTATATGTGGAAGTAATTTTAGTAGAGAG 3475742 29 100.0 36 ............................. TATTGAAGGGGTGAGAGTTGTGACTAGGCACTACAA 3475677 29 89.7 0 .....G..........A......G..... | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 98.6 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : GGGTATGGAATAAATCTGCTAATAATGATATGTTAAATAATGATACTATTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTACAAGTTGTATATTGATAAAAAAATGTATTTAGAAGCGAGTTCATTATTTGTAAATGTATCTGTAAAAAGATACAATTATAATAAAAAGATGTTTTATGAATGTGGAGATATAGTTGTTACAAGTTATAGTTATAATGATAAACTAGGTCTAATATTTGATTGTTAAGAGAATTATAGTATAACTAATTAAAATATTTTATTGAGAATTTGTTATAATTTATATCGACTACAAATTTTATATGTTACAATAGAATAATTTTGCAGTGAGCGAAAAATATGTGTAAATGGCTGTGAGTTAGTGATGGCAAGGTTTATAACTGAATTTTTGTTTTTAGCTAAAAACACTACTGGTGCCTCACTGCAAATTAACTATTTTAATAACCCTACAAGTGTTGTAATTACTATAGTTTTATTTGGG # Right flank : TTACTTATTCATTAAGAAACTTAACTGAGAGTTTGATTTATATTATTGAATTAGCAAGAGTTTTAGAAAGTAGAAAATTATACCCCAATAATACCCCAACCACAAAAATAAATAATAAAAAATATCCAAAAAAATTAGTATAACATCATAACTAAATAGCTATATACCTACACTTACGAAAACCAACAAAACAATCAAATAACCACTTGTAGACTCCCCTCGTCTCCACCAATTTTGAAAATGAAAATAATAGAATAAAAGGAATTACTTATGTTTGGACTAAGTAATTCCTTTTATTTTGCTTAAAAGCACACAATTAGCACACAACTAGAAGGTTATATAAATAAAAAGGCTGTCGCACTAGAAAATAGTGCTACGCTCTTTTTTGTATAAAAAAATAAATCCCAAGTTCAAAAGAACCTGGGATTCTTGTATAATAACTGTATGCTAAAACAAAATACTACACAAATTGATTATACTACTTATGGTGATAATTATCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //