Array 1 572-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGU01000188.1 Streptomyces albidoflavus strain NRRL F-5621 contig188.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 571 29 96.6 33 ............................G TCGAGGGCCGCGCCCGGGGTGTAGCCGGGGACG 509 29 96.6 32 .........A................... AGCGCCGTGTAGTCGTTCGTCGCGAACTTGGT 448 29 100.0 32 ............................. TCGCCGACATCCGCGCGATGCGTCGGGGCGCC 387 29 100.0 32 ............................. TGGTCATCGGTGCGCCCTTCTGGGGGTACTGG 326 29 93.1 32 A............A............... AGCACATCCGCGTAGCCTCGCGCAGCACTGCC G [309] 264 29 96.6 72 .............A............... GTCCCCGTGGCGCGGTGGGCGGCGCCGGGTACGTGGTCCCCGGGCCAAGCCGCACCTGCTGCCGTGGCTCGG 163 29 96.6 32 .............A............... ATGCCGCCCGGCGCGCCCGCCGCAGGAAGCGA 102 29 79.3 0 .............A...A...C.TCA... | ========== ====== ====== ====== ============================= ======================================================================== ================== 8 29 94.8 38 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGTATAAGAGACAGGGTTTGGGTGAGGGGGGCTGTGGGGGGGCTTGAGGTGGGCTTCAATGGGGCGAGGTTGGCGTTTGCGAAGCCGGGGGGATCTCATGAACCGTTCGCGCGGAATGCCGGAATTTCTGAAGTTGGCGTGGGTCGGGGGTTGGGCGGGGTAAACCCGCAGGTTGGAGAG # Right flank : CACGTCAAGCCCGATCCAGTGGGCGTAAACCCGCACCCAACCACCCCACCCCGCACACCCCCGATCCCCCACCC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31395-30312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGU01000064.1 Streptomyces albidoflavus strain NRRL F-5621 contig64.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 31394 29 86.2 32 C..T....T..............G..... CGATCGTGACCCGCGAAGGCATCCGGGCCGCC 31333 29 100.0 32 ............................. CCGAGGACGACTTTGCGGGCGCCCATGGTCTC 31272 29 100.0 32 ............................. TGACGCATGGTCAGGGTCAGCATGGCCAGGCC 31211 29 100.0 32 ............................. GAGACGGTGAGGGCGGTGTAGCTGGAGTTGGT 31150 29 100.0 32 ............................. TCGTACCGGGCCTGGGACATGATCGCGTCGGG 31089 29 100.0 32 ............................. GACTGGAGGATGACGTAGGGGGTGATGCCGCG 31028 29 96.6 32 ........................T.... GCGATGGTGACGTCGGCGGTAGGGCCTTGGGT 30967 29 100.0 46 ............................. TCGCAGATGGCGGCGGACGCCCCCGCGAGCGGAGGTACTGGCGGCT 30892 29 89.7 32 ..........T....A.......G..... GTACTGAGGCTCAGTGAGCCCATAGACTTCTG 30831 29 100.0 32 ............................. GGATCGGCAGCTTCCCAGGCTTCGGAGAACTC 30770 29 100.0 35 ............................. CCGACGCCGCCGGGCCTACTGGCCGGCTGGCGGCT 30706 29 89.7 32 ..........T....A.......G..... GTACTGAGGCTCAGTGAGCCCATAGACTTCTG 30645 29 100.0 32 ............................. TACCTGGTCCGGCACCAGCCGCCACCGGCATA 30584 29 93.1 32 CC........................... ACCGTGACGCTTTCGAACCACCTGCGGATCGA 30523 29 100.0 32 ............................. GTGGAGTGCCCGCGACCACTGGCTCACCCGCC 30462 29 100.0 32 ............................. CTGAACGCGGGCGGCGGGCGCCGTGATGGCCG 30401 29 89.7 32 ..........T....A.......G..... CTCACCGCGATCCTCGGTGTCGGCCCGGTCAG 30340 29 89.7 0 ..........T....A.........T... | ========== ====== ====== ====== ============================= ============================================== ================== 18 29 96.4 33 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : TCTCCGACCCCAAAGCCCTCGACAACGCCCGCAAAATCCACCCCCAACTCGACTACACCGAAGACCCGATCAAGGCAGCCGAAGGCGCCGAACTACTGCTCCACCTCACCGAGTGGCCCGAGTTCACCCGCATCGACCCGGCCGACCTCGCCACCCGCGTCGCCGTCCCCCGCGTCATCGACGGCCGAGGCACCCTGAACCGCGCCCGCTGGCAGGCCGCCGGATGGACCCACCGCGCCCTCGGCCGCCCCTGAACACCTGGCCTTTCGGATCGGGTCGGCTAGCCCCGCACTCGCGAGCTGCTCTGCAGTTCACGTTGGCGCCGTCGGCCAAACTGAAGTGGGCCGCGCGACTGCGGGGATTGCTTCCGGTGAGAGTGGTCTCGAGAGGCGCGATGCAAGTGAATGAGAACCCGCTGGCTTCGCGATAACGTTGCAGGTCAGCAAGTGTCGGCCCCGCACCCGCAGGGATGCTCCCGCGCCGCCCTCGACCGCGACAAC # Right flank : TCGATGACGGCGCGGGGTCGTGGCGGTCGCCCTTTGGGGCGAGGATCGCAACGGCCGCTCCCGGTGCTCCGTGCACGGTCGTCAGCGGTTGTGGCGGTCGTCCTCCGGGGCGACTGCGGCTCGCAACGTCTTGAAGGACGGTGCCGACATGGAGCGCGTGACGGATGGCGGTCGCCCTCCGGGACGGCCGAGGATCGGCGGATGGTCTCCCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGCCGTGCATGCTGGCAGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCGCGTCGGCCCCGCACGCGCGGGATGCCTCCACTCCGTGCCCCCGAGGCGCCATGCGGTGGGTGATCTTGGCGTACGCCTCGGCCCGGTCCATGCGCGGGGGCTCGGTGGTCGCCGGGGTCATCCGAAGACCTCCACGAGTCGGTGGGTCACCGGTTCCCGGAGGAGGCGCTGGCGCCGGAGGTGGTGGTTCCAGGTCTTGCTGTCGCAGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37957-37071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGU01000064.1 Streptomyces albidoflavus strain NRRL F-5621 contig64.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37956 29 100.0 32 ............................. CCGGTCCCCCGGCCGCTGACCCGAACGCTGAC 37895 29 100.0 32 ............................. CGCACGGCTATGTCAAGCGAGTCCGCACCTTC 37834 29 100.0 32 ............................. CCGTCACCGTGCCGGGCCGTCACCCTCGGCCC 37773 29 93.1 32 AA........................... TCAGCGGATCATCACGGACACGGCGCGGGCTC 37712 29 96.6 32 .......................C..... TGATCCGGTCGGCCCCCTGAACGCCGTGGGTG 37651 29 96.6 32 ............T................ TTCGGTGTTCCTCTCCCGCCTGCGCCCCGGCG 37590 29 100.0 32 ............................. TTCGGTGTTCCTCTCCCGCCTGCGCCCCGGCG 37529 29 100.0 32 ............................. TCGATGCCCTCGATGGTGTGCCCCGCGGCGAG 37468 29 100.0 32 ............................. ACGCCGTCCGACGCAGACCGGGTGCGGATGAC 37407 29 100.0 32 ............................. TAGGTACGGCCCATGTGGCCCAGGCTGTTGTG 37346 29 93.1 31 ...........................GT CGATACGATCCATCTCAGGATCGCTCCCTTC 37286 29 93.1 32 .......T...............G..... TCGTCGATGGACGGCAGGGTCGGCATGGGGCC 37225 29 100.0 32 ............................. ATCCGGTACGGCAAGCTCAAGGCGAGGGCCGA 37164 29 100.0 32 ............................. GCACCCCGTATGCCTGGGGCGGAGGGACCGTC 37103 29 89.7 0 ...................CC.C...... | G,CC,T [37073,37080,37087] ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.5 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGCCGTACACCGCGTCCCCGTCCAGTACCTTGAACGCCTCCGGGACCTTCACCACGAAGGGCGGCGTGATCTTCCCGAGATCATGAAGCCCCGCCCAGAACCCCGTCACCAACCTCGCCTCCGCCACCGACAGCCCCAACTCAGCCGCGATCCGCCGGCGCATCCCTTCGCTCAACACCTCGTCCCACAACACGAGGAACACCGCAGCCGAATCCAGCAAATGACAGATCAACGGATACAGGCCAGGAAGCCCATGCTCTTTCCCCCAGAACCGGACATCCAGCGCGAGGCGCTCACCATTCGACATGGGGGCGTCATAACACCCCTCACCGACAACCCCTCCTGACCTGCAGTTACACATGGCTAGCCGCACCCGTCCGTCCGCAAAATCCGCGATAAGGTCCGCTACGTGACCCATCCCCAACCCACGCGCCCCTCCCAGCCATCAGCCTTCGTTCAAGAGATCGCAAAGGCCCTATAACGCCCCAGGTCAGTAAGG # Right flank : GGATACTTCTAACGCGAGGCCCGCGAACGGGCCGAGCTCGAACGTTTGCTCTACATCTGCGGGGTGCTTCCCGGGTCTCCGCCGGTCGCCGTTCGACCGCTAGGCGCTCCCTGCGGGGTTCAGCTGCGGTCCGGTTCAGGCTGCCATTCGCAGTTCGGTGCGGGTTCGCTGGACAAGCTCCCGGACGGCTGGCTCACGCCGCCACGGGGCGAGGGCGGCGTTGAACTCGCGGAGGTAGTCCAGGGCCCGGGTCGACTGGACGCGGGCGAGGATGTCGACGGCCCGGTGGCCGAACCGTAAGCCTTGTTCGAGGTCCTTGGCCTGGAGGTGGGCGGTCCCGACGATGGCCAGGCGCATGCCGACCGAGCGGGTGAACACGCCCGGCTGCATGGCGGCGGCCTGCGCGTTCCAGGCCAGTGCGGCCTTGGGGTTCTTGAGGTCGCGGAAGACCTCGGCGGCGTCGGCGGAGAGCCGGGCGTGGTGATAGAAGTCGATCCAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4908-3478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGU01000100.1 Streptomyces albidoflavus strain NRRL F-5621 contig100.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4907 29 100.0 32 ............................. CTACTGGTCCGCTGGGCCACCGCCGAGGAACT 4846 29 100.0 32 ............................. TTCACCAGGGCGGTGAGGGTGTGGACGCCGGT 4785 29 96.6 32 ...........C................. GCGTCGGAGGCGCAGCAGAAGTACGACGATGC 4724 29 100.0 32 ............................. CTCGAGGCCACGAAGAACGACGGCTCGACCCG 4663 29 100.0 32 ............................. GGCCCGGTGTGCGCGACCGACCGCATCCGCGC 4602 29 100.0 32 ............................. GCGTACATCCCGCTCGGCGCGAACAAGCGCGA 4541 29 96.6 32 .........A................... GTGTCCATGCCTCTCGGCGTGTACGTGACCGC 4480 29 100.0 32 ............................. GCCACCACCGGCACCGGCGCCACCGGCGGGTC 4419 29 100.0 32 ............................. TCCTCGGCGGTCTTGTTGGGGGACAGGTAGTA 4358 29 100.0 32 ............................. TCCCCGGTGACGGTGTCGAGGGGACTGCCGGT 4297 29 100.0 32 ............................. ACGGCCGGGTCGTAGGCGCCGCGCACGATGCG 4236 29 100.0 32 ............................. CCGTACGCGGCGGGTGGGCCAGGTGAGTTGGT 4175 29 96.6 32 ...........A................. GCGGTGTCCAGGTCCCGTACCTCGGCCAGGCT 4114 29 100.0 32 ............................. CAGCCGATGAGGTACCGGACGACCGCCCAGGC 4053 29 100.0 32 ............................. GCGAAGGAGCTGCTGGAGCCGGGCCGGGCGGT 3992 29 100.0 32 ............................. GCGCGCTCTGCGGCGGCGGCCGGGTCCGTCTC 3931 29 100.0 33 ............................. GTCCCCCTGGAGCAGGAGCTGCGGTTCGTGGAC 3869 29 96.6 32 ............................A CCCCCTCGACTACCTGGTGCTGCTCCACGCCC 3808 29 96.6 32 ............................A CCCCCTCGACTACCTGGTGCTGCTCCACGCCC 3747 29 100.0 32 ............................. CCGATGGCCACCGTGCCGGTGGTGCAGCCCTG 3686 29 100.0 31 ............................. CGGTTCGTCATGGTCCTCTCCCGGTGCGGGG 3626 29 93.1 32 .G....................C...... CTGGCCCGCGCCGACAGCCACCTCGCCGACCT 3565 27 89.7 32 ...T........--............... ACCATCGGGCCGCGGGCGCTCACAAGGTCACC 3506 29 86.2 0 ...T..................C....AT | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.0 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCTCGACGCTCTCCTCGACGCCCTCCAGCCCGGACGCACCCTCCACTACCGCTGCGTCGCCAGCCCCGTCAGAAAACCCGGCGCCGAAACCCGCCGCCTCTACCAACTGCCTCCCGTCGTCGCCCTCTCCGGCACCGCCGCCGACGAATGGTGGCTCCGCCAAACCCAAACCGCCGGCCTGACCCCCACCACCCACCACTCCACCCCCCTCGACACCATCCGCGGCCAGCAACCCGACAAACACGGCCACCGCGACCACAACCGCATCCGTCACGCCCGCACGCGCTTCGACGGAACCGCCACCATCACCGACCCCGCCCGCCTACGCCACACCATCCTCAACGGCATCGGACGCGCGAAAGCCTACGGCTGCGGTCTCCTCAGCATCACCCCCGCCCAGGACACCGCATGAAAGCGACCAACGCCCGCCGCCACCTGGCCAAACCCACCCTCGCCATGCTGCCCCGCATCGGCGACTCCCTGTCCTTCCTCTACCTCGA # Right flank : GCCAGGCCAGAACCTCCAAGGCATCCTTTCTGCACGTGCGGGGTAATTCAGGCGGGTCTGTATGTGACGGGCTGCGTACTCGTTCGCTCCGGGCATGCGGAGTGCTTCGGTATCAGGGGCCGCCCCAGCGCGACATCATGTCGGCTCCGCGTCTGCCGGGCTGTTCCGCCATCAACCGCCGCGTTTCACACGCCGTTGGCACCCACCTTCTTTTCTAGGGGGCTGCGATCCGGCTGAAGGGCACCGCTCGCACGGCAGCCCGCTGCCTGAGAGGGCCGATTGATGAGTTCTCCTGTGCTGGCTTGCCCTTGCCGTGTTGCCTGACTTCGGGCAAGCCTGCGGCAACTGCTTCTGTGGTGGGGGGGCAAGCCTTTGGGCAAGCGGCAGTGTTGAGAGTGAGGGGCACATCGTTCTCCAGGAGGTGTGCCGTGCACTACGGACCGACACAGACGCTGTACGCCAAGACGCTGACCACGATCAGGGCGGCCACCACACGACCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //