Array 1 40536-42272 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793057.1 Rothia sp. HMSC08A08 Scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40536 28 100.0 33 ............................ GTTTGGGGTGAACTTCCAAATCGGGGATACAGT 40597 28 100.0 33 ............................ GGCGTGCCAGAGCAGAAAGTACAGCCGAAAGAA 40658 28 100.0 33 ............................ GAACGTACTCACCGCGTCCTTTATGCCAATACT 40719 28 100.0 33 ............................ GTACGAACAACGCTCTTACCTGACACTTGAAGA 40780 28 100.0 33 ............................ GAATAGCCTAGCGCGTAGCGGTGACACATGGGT 40841 28 100.0 33 ............................ GCTCTATGTCCCTGTCAGAGAAGATAGTTTCGT 40902 28 100.0 33 ............................ GCACTATACGGCATCATCGGCGCGCTACTAGGC 40963 28 100.0 33 ............................ TGCGCATCATCAAACTAGGCGGCTCCCTAGACG 41024 28 100.0 33 ............................ GACATCGTTCATCGTGTATGGTGCACCGGATCA 41085 28 100.0 33 ............................ GCTGCCTTGGTCTCGCACAGCGTCGTCTTCGTG 41146 28 100.0 33 ............................ GATCGTAGTGCCCTTCCCGCTGATAAATGTGGC 41207 28 100.0 33 ............................ GCAGACTATGAGCAGGACAGCGAATGCAGTTCC 41268 28 100.0 33 ............................ GCCGCCGCCCCTATATGCAACGGTAGGAGCGGC 41329 28 96.4 33 ..............C............. CATATTTCAGCTCGGTACCGCTCTGCGCGAATG 41390 28 92.9 33 ..G...........C............. CAAATGAGCGAATTTCTTAACTACGAAAAGCTA 41451 28 92.9 33 ..G...........C............. CGTTACCCACCCGTCCGTTGAAAAAGACCAATC 41512 28 92.9 33 ..G...........C............. CAACCACCGACTCACCACGCACAGACCCCACCA 41573 28 92.9 33 ..G...........C............. CCTTGCCCGTTACCTTGACCTTCTGAAGGAAAA 41634 28 92.9 33 ..G...........C............. CAGAGCGACGCTACGCAGGTGATCAATTCACCA 41695 28 92.9 33 ..G...........C............. CCGTCGTCGCCTTTCGCCTCTTCGAGTATATCC 41756 28 92.9 33 ..G...........C............. CAGACGTTGAAGGGTGGTATGGCGGCGTAGGGG 41817 28 92.9 33 ....C.........C............. CCAACTAGACTTACCCGAAACAGGCGGGGGTAA G [41819] 41879 28 92.9 33 ..G...........C............. CTCTGGTGATTTTGTGCGCGGCTTCTCTGCTGG 41940 28 92.9 33 ..G...........C............. CGGGGCACACAAAAGCACCTGCCTATTCTCATT 42001 28 92.9 33 ..G...........C............. CGTACACGCCGCGGGGTATTAGAAAGGGTCACA 42062 28 92.9 33 ..G...........C............. CGACTGGGACCCGCGCAACGAATTCTAAGGAGC 42123 28 92.9 33 ..G...........C............. CAGTGGGAGAGATGACGGAAATCACCATCGAAT 42184 28 92.9 33 ..G...........C............. GAACCCTGAAGAAGCAGCTGCCACACTCTCGCT 42245 28 82.1 0 G......................A.TTT | ========== ====== ====== ====== ============================ ================================= ================== 29 28 95.8 33 ATTTTCCCCGCACCTGCGGGGATGAGCC # Left flank : TTTGGGATGAGAAAACTGGTGGCACATCTGCTCGACACAATTTTGAGATGGATGGGGACGCATGATTGTAGTGGTTTTATCTGCATGCCCAGTTGGATTACGAGGCGATCTTACGAGGTGGTTATTAGAAATTAGTGCTGGCGTTTTCGTAGGAAAAGTGAGTGCGCGCGTGCGTGAACATTTATGGAATCGCATTACGGTTACTTGTAGTGATGGTCGTGCTCTTATGGTGTATTCGGCAGATAATGAACAGCGTCTTGATTTTAAGATTCATAATTATCCATGGGAGCCTGTAGATTTTGAGGGAGTCAAACTTATGATGCGTCCATCTACTCCCAAAGAAAAATTGGGACTTCGAAAAGGGTGGAGTAAAGCGAGTCGATATAGGCGTGCTTCCCGGCGACGCTACAGTTAAAAATCATGTAGGGTTAATAGAGGCTTTGGGCTCCAAACTAATTCTAAAACTTGCTTTGTGGGGATAAAGCCCCATATCAGCAAGT # Right flank : TTTCAACCCTATGAGGAATACTCCCTTAAATCTAGTGATGCATATCATGCTTATTGGAGTTGGTGGGGTATTTCCTTAACTGTATAGTTATATATGTTGTTCGGGCGGGTCCCGAAAAACAGTCCGGCCCCATCGTATAGCGGCCTAGTACTCCGCCCTNNNNNNNNNNNNNNNNNNNNACCGGTTCAAATCCGGTTGGGGTCACACTAGGAAAAGAGAATTCCCCGGTTCAGGCGAACCGGGGAATTCTCTTTATCTTTATAAATGCCAAGGGGGTCAGGATTTTCTAAAAGGCACTTATATAACCTTTTCAGCAAAACCTAACCTGCTCGCGTCATAATGTGAATAACCAGAAACGGGGAGCAGCCTACTTATTCTCCCCGCCCGCACTCGCAGACCCTTGCGCACTGGCAGAAGCACCCGCTGCGGCAGGAGCACGGTGCACCATACGCCACGTTCCCTCAAGATAATGAGCCGTCACCTGGCCCGAGACAGCCCCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : ATGTTCCCCGCACCCGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //