Array 1 1857534-1857304 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012024.1 Bacillus smithii strain DSM 4216 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1857533 30 86.7 36 ACGC.......................... TCATGACGATCATAAAAGCCATTTTGAAACTCTTTA C [1857526] 1857466 30 100.0 36 .............................. ATTTCACCAGTATCCGTTGTTTCTACTCGAACATCT 1857400 30 100.0 37 .............................. CTCCTTATTAACTCATATGATCGCGCATGTTACTGGC 1857333 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.8 37 GTTTTTATTTTAACTATGAGGAATTGAAAC # Left flank : AGAAGAACGATATAAAAAACGACTTAAACACAGCCAACCATTGTTGGAGGCTTTTTCAGCATGGCTAAAAACAGAGAAAAGCAATGTTTTACCAAAGAGTCTATTAGGTCAAGCCATTACATACTGCCTCAACCAATGGGAAAAACTCGTGGCATTTTTAGAGGATGGACGTTTAGAAATCGATAATAATCGAAGTGAACGATCCATTAAACCATTTGTGATCGGTAGGAAGAACTGGATTTTTAGCAATACTCCGAAAGGAGCTAAGGCCAGCTCAATCATTTACAGTATTGTGGAGACAGCAAAAGAGAATAAATTAAATCCATTTTATTATCTTCGCTACTTATTTGAAAGGCTTCCCAATATGGATATAAGCAATATGGATGAGCTTGATCAACTACTTCCTTGGTCCAAAACAATTCCTTTGAATTGTCGGGTTTTTAATAACTTATCACAATAATAGTATTTAATCCCTATCATTAAAAGGTGGGGATTATTTT # Right flank : CAAAGTATCATTAAGCCCCTAATGAACTCGGGCACTCTATAAAGTTGTTTTTTGTATTTTTATAATCGAAGTGACTAAACGAAGAATGGAACCTTTTAAGATAAAAATAGGCAGTGAATGTTATTAGAAGCTGTTGGTATAAGAGACCTGTAGGAGAGAAATGTACAAATAAAGGAGTAGAAGAAAGTAAGGTTGTTGAGAAGATACAAGAAATGGTTAGGGAGTACAGGGATGAGTTAGTTACAGCTATAAACAAAGGAGAGGGAGGAGATATTGCTAAGGAAAGAGGCAATATTAAAAGAGATTGCACCTACAGAAAGAGCTACAAAAGGAAAAAACAGATTATCGAGAGCTATGGATGCTTATGATAATGAAGATTATACAAGATGAATATTTGGAAAGGAAAGAGAAATATAAGAATCAGCAAAAAAATATTGAAAGTGAGATAGATCTTTTAAATAAGAACTGAAAAAGTTGGATGCTGTTAATGATATGGATAA # Questionable array : NO Score: 8.65 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1860512-1860018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012024.1 Bacillus smithii strain DSM 4216 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1860511 30 100.0 38 .............................. TCACAGCAATGATCGAGAATCCGATAAGCGGTTTAACC 1860443 30 100.0 37 .............................. AAGCTGAAATCAACCCAAGCAGGAATCCAGAAGAAGT 1860376 30 100.0 35 .............................. TATCCTTCACAATACGGCAGGATTTCTGCCTCCTC 1860311 30 100.0 36 .............................. CGCCGACAACGCCTTTCGCTGCATTTTCGATTCCTT 1860245 30 100.0 36 .............................. TCCTTTGCCACGCTAGATTTCAATATACCTTCCACA 1860179 30 100.0 35 .............................. GGGGGTGCAAAATTTGAAATTCGAGCTCCGTTTTC 1860114 30 100.0 37 .............................. TATTGTAAAATGTTTAAATAATGGTGAATGCCCTGTT 1860047 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 GTTTTTATTTTAACTATGAGGAATTGAAAC # Left flank : TTATAACTGTATTTCTTTATAATCAAGTTTTTTCCTTTACAAAGAGATTGTACTTGTTGTAAATCGACATGGAATAGGGAGCGAAAAGCTGCCTATATGCAAGAATCGAGCGATGTGCCGTTGGTACGTTGTCTCGGTTCTTATTTGTTTGAAGGTAAGGCAGATGCACATCGTATAGTAAAAAAACTGTCAAAAAGGCTGATTATACAGTTAGTGAAGCGATTCAGAAGGTAGGAATCATTCACCTGTGTCTGTTCTGATGGATACTCAGTGATTTAAAAATCTCGAATCAACACTAGATGGTTGAATTCATTGAATAGCAACATATATTTTGTCGTCGACCCCTAATAGCGCACAAAACCCAGAGGATCGACGACAGTTTCTTTTACTCTTTCCTTCTTACAGCCATCAGCTATTCTCTCTATTGACGGAATTTTCGAAATGGAGTATCCTGAACTTGCCCTGCTTTGAAAATTGTTAATGTATCAATGCATTTTGGG # Right flank : AACTACTGTCGTTCTTGCGGAATGAAACATACGAAGTTTTTATTTTAACTGTAAGCGTCAAATCTTGGACACCTTCTTGATGTGCTAATTTCATGAGATAATCTCCTCAAGATGAAATTGAAGGAGGTTTTTTTATGCCTAAGAATCCTGAATTACGAAAGGTTTGGGAACAACGAATCGCTGACTATCGTAAAAGCGGTCAAACTCAAGTAAACTGGTGCAAGGAAAATCAATGGAGTATTCACCAGTTTAAATACTGGTTAAGAAAAATTGAAAATCCAATAAAAAATCAAGGAAAGTCTACAAAATGGGCATCCGTTACCCTAGAAGATCATTCACAAACAGTTGAAAATTCATTACGGATTGAAATTAGTGGGATTTCAATTGAAGTAAAACCTGGTTTCGATCCGGCCTTTCTTTCAGAAGTGGTTAGGACGTTGAAATCAACATGTTAGTTGGTACAAGAGCTGAACGAGTTTACTTGGCAAAAGGAAGTACTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1911341-1911180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012024.1 Bacillus smithii strain DSM 4216 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1911340 30 100.0 35 .............................. AATTTCTGACTTTCGATAAAGTCAGCAACCGCTAG 1911275 30 100.0 36 .............................. AAGTACAGCTCTCCAATTTCACCAGGAGCAACCGGC 1911209 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTAACTATGAGGAATTGAAAC # Left flank : GAAAACTCAGTTCTTTGATCCATATGACGAAGTGTTTTCTCATTTAATTGAAGTGAATTTTCGTAACAAGTATGAGGCTTATTACGGAGAACCGCCAAAAGAGCGGTTGTTGATCGAACCATTGCATGTCACTCAAAAACATAAAGTCGTTACGACTTTTAAAAACTACTATATTACTGCCTGGCTGGGGAAATTTCGCTTACAGTCATCTCCAAAAAATTTAACCTTCTTATTACAAACGGGGATAGGCGGAAAAAACTCTCAAGGGTTTGGGATGTTTCGAGTCGTGCAAGAATTGTAAAGATGAATTTGTCGTCGACCCCCAATCGTGCAAAAACTCCAAGGGATCGACGACAAAATGTGTTTATAGTACAACTAGGTAAAAATGCAGAAAATATCAGTGGTAAGAGAAAATAGATAAAATTATTCTTTTACGATAAAATGAAAAACAACAAACTCTATATTTTATGTCATCCCTTGATTTATCAACTATTTTTGAG # Right flank : TACAGACATCGGTCCGATGGAATTATGAGAACATTGGGAATGTGGTAGCCATTAACAACAAAACTTTAATTGTGCACGGGGCTGTTTTCTCAACGATTGATGTTTTTATCTGGATTTATAAAATGATGATATATTTGCGGACGATAATATGAATAGCATTAATATCAGGAATGTGGTCTTTCAACTTATTTGTTTTGGATTATTGGTGTTATTCGTTCTGTTCATCGTGTGGCTTTTCCGTTCAAATAAAAAACGCATCCGACAACTCGATCGGATTGAAAAGAAAATCGAAGAGATGGATGAACAAATTAAGAAAGGTCATAACGGACGGCAATAGTGACCGTTTTACTAAATATTGCTTTTGAACTTGAAAACGATGTACGAGAAATTAGTAACAAATCGGATGCAGAAAATGCCTTTGTATTTTCAATATTAAATACAACTAGCTTGGTAAGATTGAATTTATATGGGGGCGTTTGTGAGTAGCTAATTGTAGTATT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1914814-1914384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012024.1 Bacillus smithii strain DSM 4216 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1914813 30 100.0 35 .............................. TACATTTTCATACATTGATCCTGGTCGCGTAGCAA 1914748 30 100.0 38 .............................. TTCGATTATACAAAAAAGGCTGGAAGCGAGAAGCGATC 1914680 30 100.0 39 .............................. TGCTGTTGCCCATTTCAAAGATGGCGGTTATCAATTCGA 1914611 30 100.0 35 .............................. AATAATCCAATACCAATAGATAAAGGAGTAAGCAC 1914546 30 100.0 36 .............................. TTCAATTGTTAAAGCCGAGCGAAGAAACGTCGAAAG 1914480 30 100.0 37 .............................. TTCGTATTTTTGGGACAATATTCGCAAGCCCTTCAAA 1914413 30 90.0 0 ...........................TTT | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 98.6 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : GATTGCCATTCCGAAGGCTGTGCAGGAACAGCATGTGATCGAAAATGCAGAAGCGGCAACGATTGAATTAACCAAGGAAGACCTAGATAAATTGGATAAGGTGTTTCCGAAACCAACTAAAAAAATGCCTTTGGATATTATTTAAAAGAACTCATTGTGGAGTTCTTTTTTGTGGAAAAATTCGCTTTCGCATCTTATGTTGCATGATGAAAATCCGCTAATTCTGAAAAAGAAAAATATTAGTCGTATATCGGCCCATCGAATGTTGAAAGAAAATAAAATTTAAAAAGTTCTCGATCTCATTGTATTTTTTGTCGTCGACCTCCAATAGCGTTTACTTCCCGGGAGATCGACGACAATTTGATTCGAGAAGAAAACAAGAGAATGGAGAAGAAAATCGAAGAAAAGAAAAAGATTGATAAACTTTTACTGTAACTTTAAAATGGAATTAACAAAAAATTCACGATTATGAAAATGTTGCTGCATCAACGTTTTTTGGG # Right flank : AAGAGAGACGAGTTTCTTAAACACTTTGATAGATAAGTTTGTGACATGTTTGCTTTGTTCAATGGAGCTATATAGTTTTTGTGTGTTCTCTGATTCATTATTCAGTAAAAAAGTGCAAAAACATAAATTGTATAATGCTAATAACAATTCAGATGTTACTATTTGAATCAGAAATTCCTTTTAAAGGAGTTTTTTAGAATACACGAATGCAAAAGATTCAAATAAATGTGACAGTTTTGCGTTGTTACACTATCCTTGACACCTCGTGCGGTGTTGTCAATAGCCGTTTTTGTAACTAATTACAGATGGCTTGATCGAACGTTTGCTTCAGTTATTATCGATTAATTGACCGGCTTTTTCAAAGCCTAATAATTTTATTCCATTGACGACCAGGTATGGCCTTTTCGGGGAAGGCATCTTACCTGTCAGGAATAAGGAAAGGATCGTTCGTCATACAAGCAATAGGGATGGTAGTAAAAAAGGGATTATTTTGAAATAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2776885-2776528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012024.1 Bacillus smithii strain DSM 4216 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2776884 30 100.0 35 .............................. TTGAGAACAACGGTGTCATTACCAATGCAATACGC 2776819 30 100.0 36 .............................. ATTGTATTGCGGATGTCATTAGCATTGACTTCAGCA 2776753 30 100.0 36 .............................. CAGAACTAACTTGAGCTCAACAGAATTTGAAGCCAG 2776687 30 100.0 34 .............................. ATTTTTGACTTTCCGCAAAATTTGCTACGGTTAT 2776623 30 93.3 36 ............A....T............ TTCTCCCGATCATAATATTTAAGCTCGTTAATATAC 2776557 30 80.0 0 ........................CTTTTA | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 95.5 36 GTTTAAATCTTACCTATAAGGAATTGAAAC # Left flank : AAACAGAGTTTTGACAATGAGTCAGCTAAAATGGGGCATACTCAACCCCAATCCTTCTTCAACCTGCTACAGACCGACGAGTTTTTGAAACAGTAAATAGAGCGGAAAAGGCGTTGAAAATTTGCAGACAGCACATGAACTGGATTCAAAACTAAGTGTTGGAAGGAGAATTTTCACAGGCTGACTATACAAAGGTTGAAAAAAGAATGGGAACTTTTACTAGAACCTTACGAAAGTTCGGTTATTTTTTACTCCTTCAAACTCAAAAATATCTAGAAGAAACGGGATTCAAAAAAGTATAGAACCTTTACATTGTCGTCGACCTTTTAAGAGGTAAAAAACCCCGGAGATCGACGACATTTTTCATATGTAAGAAAAACCGAGAAAATGAAAGAAAAAGAAAGAAAACTAAAGAAATTTTGATTATTTGCTCCAACTAAAAAAGTTGTTTTTAAAAAACACCGTTTGCTAAAATTCCCTTAAATTCAATCATGTTTGGG # Right flank : TTGATATACTGGCCGGCGGGGAGTTTTGTTCGTTAATGGATGGATATAATAAATTTCGTATGCAATCGTTTTGGTTCGGTGAAACTTATGCCTTAGGTCTATTTTTGTGCCTTAATAAGTAAGCGGTTTCACGAATCGTTAAACAATGATTGACTAGATACATGGACGGATCAACCATTTTGTTTTGGAAGTAAGTGGAATAACTGTACGTTAACTTAGCCTCAGACTATTTACGCAGTTAGAGTAATTAGAGCCAATTTTGACAAATTTAACATTCCGTTGTTGGTGTATCATGAATATGGGAAGAATAAAGGATTCAGAGTATATAGTATAAAAAGCGGCGTTCCTTTTTCTCGCGATAAAAAACTTCAATTTTGGAGGAACATGATATGGACCATAAAACGTTAAAACCTTTTCCAAAAGATTTTTTATGGGGCGCTTCTACATCTGCCTATCAATTTGAAGGAGCATGGAATGAAGACGGCAAAGGACCGTCCGTC # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 6 2798306-2794821 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012024.1 Bacillus smithii strain DSM 4216 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================ ================== 2798305 29 100.0 37 ............................. CAAGGGGAACTCTTCCCCTTGACCCCTCCCCAAAAAC 2798239 29 100.0 35 ............................. GGGGCTGTCGGCTGCCGCCGAAGCAATGCTAAAGC 2798175 29 100.0 37 ............................. ATTGCACATCGGACATAACCTCACTTTGCAGAACCAC 2798109 29 100.0 39 ............................. GATGGAAGTTTAAGGTTCATACCACGTCCGTTGGATTTG 2798041 29 100.0 36 ............................. AAGAATGAATATGGTCCCCTCATAGTAGGCAAAAGC 2797976 29 100.0 36 ............................. CTCTTTATAACCCATTACCATACTTGCTGTTGGACG 2797911 29 100.0 36 ............................. TTATTCAGCTTCATAGCTTTTAGGTATCCTTATTTT 2797846 29 100.0 37 ............................. TTGCTTGCAAATGGAACATGTTCCCCTTTTCCGAACC 2797780 29 100.0 35 ............................. AGACTGGAACGATTTTCGCTTTTACGTTGATGAAG 2797716 29 100.0 37 ............................. GAGTTTGTTTGACAGTAAAGCCGGCCTTAGCCAGCTC 2797650 29 100.0 35 ............................. GTGAGTGCTTTCCAACCACTTTGAAGTCCGGCATC 2797586 29 100.0 37 ............................. GCATCACTGCCGCCGATTCCTTTTGTGCGTTCCATCA 2797520 29 100.0 35 ............................. CTGGTAAATTCTTTTCCTTCCACATCCGCAATTTG 2797456 29 100.0 41 ............................. ACAAATAGCGATTAGAAGACTGTTAGATCAAGGAATTCAAC 2797386 29 100.0 36 ............................. TAAGATTAGACTCGTGATCGGATGTATCTCGTATAG 2797321 29 100.0 38 ............................. AAAGAAGATCCCGCTATGTTAATCAAAAAAATAATATC 2797254 29 100.0 36 ............................. TTTGGTCATTATGCGTTTTGTAGATTTGTGAGTGTT 2797189 29 100.0 37 ............................. GATAATAAAAAGTCCGTTCATCTTCGATCACACCGTC 2797123 29 100.0 38 ............................. GACTGTGCGTGCTCAAGTAACTGTGCGATGTAAAGAAC 2797056 29 100.0 76 ............................. CAGCGCACCCCGGTCCAATACAGGAAGATCGTTTTTCCCATTGGCATATTGCAAGCTAACAGCCGGAGCATCTTCT 2796951 29 100.0 36 ............................. GAAGTACGAAAATATGCGGCGGACCTTCGCGATAAA 2796886 29 100.0 35 ............................. CCACGGGGGAGCACCCCCTTCACACGCGGCAATTG 2796822 29 100.0 37 ............................. TTGGTTTAACTCTTTGAATATGCACGATTGGCGTATA 2796756 29 100.0 37 ............................. GGGCGGAGCAACGATATAAACCGTTGGTAGAAACGCC 2796690 29 100.0 38 ............................. TTGATTCTTCTTCATCATAATCAATGATTTCTGCCTTA 2796623 29 100.0 36 ............................. CACCGCAACAGCTCCGACATATGCCAAAGTCACATC 2796558 29 100.0 35 ............................. AAAGGTACAGCCGGTCTTGCGAATCAAGCGATATA 2796494 29 100.0 36 ............................. TCGGCGTTTCTGACTACAGACGCCGGAGAAGTATCA 2796429 29 100.0 37 ............................. AACCAATTAACTTTTGATATTTGGGAAGAACATGCCA 2796363 29 100.0 36 ............................. ATAATAAAATCCGAACCACCCCGCCAAAAATACGCT 2796298 29 100.0 35 ............................. GAAATGCTATACCGTTTTTAATTTGATTGTAAGTA 2796234 29 100.0 37 ............................. GATTAGCAAAACAGGAATTAGCACGCCGTTCCTATAG 2796168 29 100.0 37 ............................. TCAACTCCCCAATCTTTAGTTGCAGCATTGGATTCTG 2796102 29 100.0 39 ............................. AAGAAGAATTTCAAATGAAAAGAAAAGAATATGAGGAAG 2796034 29 100.0 36 ............................. CAGCAATGGCTATAACAGGGGTTCCGGCCAAATATT 2795969 29 100.0 37 ............................. GGTGTTAAATCAGATTATCTAAGTAGACTTTTCATTC 2795903 29 100.0 38 ............................. AAATGAAATTTTTAGGAGGTGTTGGGGATGGCGCGACC 2795836 29 100.0 35 ............................. TGCACGAATTTTTAAAGTATTGGGCCGGTGAAATC 2795772 29 100.0 36 ............................. GTGAAATTTTAGAGGATTTAGTTCACAAAGAAATAA 2795707 29 100.0 37 ............................. AAAGTGTGGAGAGAATTGAAACAAAACTAGATTTACT 2795641 29 100.0 38 ............................. TCAATGAAGCCAATTGGTTTGATAAAAAATTGAAGTTG 2795574 29 100.0 36 ............................. TTACAATATTGTCAAATTTCACACGCTCAATATTCC 2795509 29 100.0 35 ............................. GAAGAAGGTGTCCCTTCAGCGTATCCAACATATCC 2795445 29 100.0 38 ............................. GAAATCAATTTGAACATCTATATCACTGGCTGATGCCT 2795378 29 100.0 36 ............................. ATGGTCAATATCTATTGCAACCAAATCCGACAAATC 2795313 29 100.0 36 ............................. AGCTGCTTTCATAATTTCATCTTTCATGTATTTCAC 2795248 29 100.0 36 ............................. CTTTTATAAACGTTGAAATTACCCAAGTTCCTTTGC 2795183 29 100.0 40 ............................. TTGGGATTGGCTATGTAATGGGAGTGAAAGCTGCTTTCGC 2795114 29 100.0 36 ............................. TCTTATGCGGAATATATCCAGCCGCATATTGCTGCC 2795049 29 100.0 38 ............................. AGGAAGAACAGCGGGAAAATATCAAAAAAGGCGTATCC 2794982 29 100.0 37 ............................. GGAGCCCGGGAACGTATGAGAATTCAAGACAGAGCGC 2794916 29 100.0 38 ............................. AAATGTCTGGGCTGTAATTCAAACAGTGTCTCAAGCGA 2794849 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================ ================== 53 29 100.0 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TGGACACAAAATTCTGTGTTTGAAGGGGAAATTTCAACTGGAAAATTAACGAAATGTATGTTTGAATTGAATCAGATTATTAACAAAAAGGAAGATTCCATTTACTTATATCAAGTGAATAACCCAAGAAATATTAAGAAAGTGGTTTATGGTCAAGAGAAGAATCCTTTAGATTTATTTTTATAAACGCGATTCAATGTAATAAATACAATCCATGAAATGTGGAGTCGTCTTAAATTTAAAAAAAGTGACAGTAGGATCCACAAAGAATTTTAAAACTTTATAAAAAATGTTTCTGATCTCTTCAATTGATGTTTTGCAGCGAATCTCGTTTTTATAAAAATCACCCTAATCTCTTGCTGCTTAAGGGTTTTGATAGCTTTTAAAGATCTAGTGAAAAACACAACTACCGATTTGCTGCAAAACTAATATGTTCGTCGAAACATTGAAGTATCCCTAGTCCTTGATAAATAAGGATTTTTTGAGTGCCAAATTGTAGG # Right flank : GCCGTTCAGTCCGAAGATGGTAAGCGTCAAATCTTGGACACCTTCTTGATGTGCTAATTTCATGAGATAATCTCCTCAAGATGAAATTGAAGGAGGTTTTTTTATGCCTAAGAATCCTGAATTACGAAAGGTTTGGGAACAACGAATCGCTGACTATCGTAAAAGCGGTCAAACTCAAGTAAACTGGTGCAAGGAAAATCAATGGAGTATTCACCAGTTTAAATACTGGTTAAGAAAAATTGAAAATCCAATAAAAAATCAAGGAAAGTCTACAAAATGGGCATCCGTTACCCTAGAAGATCATTCACAAACAGTTGAAAATTCATTACGGATTGAAATTAGTGGGATTTCAATTGAAGTAAAACCTGGTTTCGATCCGGCCTTTCTTTCAGAAGTGGTTAGGACGTTGAAATCAACATGTTAGTTGGTACAAGAGCTGAACGAGTTTACTTGGCAAAAGGAAGTACTGATTTGAGAAAATCCATTGATGGATTAGCTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //