Array 1 612-1742 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLR01000026.1 Malikia spinosa strain 83 contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 612 36 100.0 31 .................................... CTTTTGCTCGGATGATTTTTCTGCCTTGTCT 679 36 100.0 33 .................................... CATCACGGCTTTTTGTGCTTTACCCTTAGTTGC 748 36 100.0 34 .................................... TCGTCCAGTTTCTCAAGGAAATGCACGCTTGCAG 818 36 100.0 32 .................................... CAGTCGGCCGCGTCAGCCATACGTTCACATGC 886 36 100.0 30 .................................... ACGACTTTCGCAAGCCAATGTTTGAGGGTT 952 36 100.0 31 .................................... AGCATCAGCCAGGGCCGGAGCATCAGCCAGG 1019 36 100.0 33 .................................... TGCTTCATTGCCTCATACTTACCGCGTTTTTTG 1088 36 100.0 36 .................................... TTTTCCTTTTTTGATGGGTCAGAGAAACAGAGAAAG 1160 36 100.0 32 .................................... ACGTCGTTCTCGGGCAATTTGAGAATTGCGCT 1228 36 100.0 33 .................................... ATCACCGGGCCGCTTCGTTGTTGCTTGCATCTA 1297 36 97.2 33 .........................T.......... GTTTCTAATTGCACCTGTACGATAGCCGTTTTG 1366 36 100.0 34 .................................... ACGTTTCAATTGCTAGGTCATGATTGGATTCAAC 1436 36 94.4 32 .............T.C.................... GTTTCAGCTTTCTGGGGTTGTTCTAGTTCTTC 1504 36 88.9 32 ..................CG.A...T.......... TGCCGCAGCACTTCGGCTTGTTCCATCGTCGT 1572 36 88.9 33 ..................CG.A...A.......... TGCCAGCGCTTCGTATGATTTTAATGCGCTCAT 1641 36 94.4 31 .....................A...T.......... GCAGTTTTTGCCACTACCTTAACTAGCACAA 1708 35 72.2 0 T...A.............C.AA...TA....-T..T | ========== ====== ====== ====== ==================================== ==================================== ================== 17 36 96.2 33 GATTCAATCAAGCCCTGATACCAAAGGGATTAAGAC # Left flank : CGACCAGCCAGCGCTTTGGCCTGACCATGGTCTCGGCCATCAGCAGCAAGGGCCTGGTGAGGTTCGAGTTTCTCGAAGGTGCAGCCACAGCTCAGACGACTCTGAGCTTCATGCAACGACTCGTGCAAGACAGCCAAGGCCACAAGGTCTTCCTCATCCTCGACAACCTCAGGGCTCACCATGCCAAGGACGTAGCCGCTTGGGTGCAGGCACATGAGCACGAGATCGAGGTGTTCTACCTGCCGCCCTACGCACCGCAGAGCAACCCGGACGAGTACCTCAACCGGGACTTCAAGACCCAGTTGCGCAGCGCCAATCGCTGCAGAACACCAGGCGGATTGCTGGAGAAGGCTACCGCCTTCATGCAGTTCCTGGTTAGCAGCCCGGAGCGGGTGAAGTCCTATTTCCAGCATGATTCAGTGGTTTATGCCGTATGATCTGGTTAATGATTGCCGTCTAAATAAGACGACATGACGTTTCCCAGTAAGTTAGTTAGTAAG # Right flank : TATCAACAATCATGCAAGATTGGTAGCCGCAGTAATATTCAATCAGGCCCCAATGAAAATGGATCAGGATACTTCAAGTCGGACAATTAATGGGGAGTATTAAAATATGAGATTCAAAGCAGTTTCTAATGCTCCATTTTATCCTGACCCAGGTTTTCTCCTTATTCCACATCACGGCACTCACGATTGATCCTGTTGGCGCCGACAGGCTATCTGTTGCGCGCATTTGATCGCCAGCGCATCGGATGTTGCAGGCGACACGTTTGGAAACCTGATGGCTTCACGCCAGGATCATCTAGGTTCTTGGCGTCTATCGAACTTCGATTCCGCTGTCATGCATGAGCCCTCATGGGATGTTTTCCTTGGGTTGTTTGGGTCCATGCCCATGACAAAAAACTTTCCCCAGCTTCCTTGCTGAACAATTTCATCCCTGATACCGTGCGTTCCCAGTTGAAAGCAGCATGACTGCTTCGGAAGGGCAAGGGGAGGATCTATGTGCT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCAATCAAGCCCTGATACCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 19052-20192 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLR01000048.1 Malikia spinosa strain 83 contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 19052 36 100.0 33 .................................... TTAACGCGGCTTCGATGGTTTCAAGGGCGTCAA 19121 36 100.0 36 .................................... ACCAGACTTTGGAGCCGGACCAAGGGCCGGGAAAGT 19193 36 100.0 32 .................................... TGTTTGAACGCGGCGCCCGTCCGTTCTTTTGC 19261 36 100.0 33 .................................... ACAATCCAGATTGCACAAGCTTTGCAAGCCGCA 19330 36 100.0 31 .................................... GTGAATATTGTAGCGACACGGCCGTTAATGG 19397 36 100.0 33 .................................... GATTCAACGATATAAACGTGGCCGGATGACATC 19466 36 100.0 35 .................................... AGCCTATGTATCAGTCCATTTCCTGATCTGATGTC 19537 36 100.0 34 .................................... AATGCCATAAAGGTCGCCTTACCATTTGGTACCT 19607 36 100.0 33 .................................... TTGTGCATGTCGATGCCGTAGACCGTGTACTCG 19676 36 100.0 33 .................................... AAGCGCCTGATTTTCGGCGTGCAGGCGTCGTAT 19745 36 100.0 33 .................................... GAAGGGGCTGTGTGTCATTTGATGTTGTGGGCG 19814 36 100.0 31 .................................... AAGTAAGTGTAAAAGAATCTTCGACGCATTT 19881 36 100.0 33 .................................... CATTGTTCCACCTTTCAATGTGCTGCAAACCCT 19950 36 100.0 31 .................................... CACTGCGCTCTTAAAGAACTTCTTGTAGTAG 20017 36 100.0 35 .................................... CGCCAACTCTTCGATCATGTCAGCCTGGGTCATTG 20088 36 100.0 33 .................................... TTTGCCAGCATGTTACCCGCACGCTCAAACTGT 20157 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 17 36 100.0 33 GATTCAATCAAGCCCTGATACCAAAGGGATTAAGAC # Left flank : GCTGATGGAGCGCTGGCAAGCACGCAATGCCGGTGTGCTGCTGGCCCATCTGCACAGCCTGCAGCGTTGGGCCAGCGCGCAAATGAACCAGATCTGAACTAGCCCATGAGCCACAACAAGCGCATCCATTGGCTGGTCTGCTATGACATCAGTGACCCGAAGCGTCTGATCCGGGTCCACCGCTGCCTGAAGAAGGAGGGGGTTCCGGTACAGTATTCGGTCTTCATGCTGCACGCCACCCAGTCAGGCATGACCCTGGTGATGGCCAAACTGGCATCGATCATCGATCCGGATGGGGACGACGTGCGCGCCTACCCGGTGCCAGAGCAGCCCTGGAAAATCACGATCGGCGCCGACCTGATACCGAAGGATCTGTGGATAATCGAAACATGATTCTGCAGCTACCCCAAAAGTACGGAAAGGTTGGCTTGACGAGGAGCGCGAAGTTCGTCAAACCAGGCCACAAGCCTTTGATCCTTAAGGATTTTCTACAAGCTGGA # Right flank : CGTAGCCGGGGCCACAACCTTAGGGATGGTGTTCAAAACACCCGTGGCGGCGGCCACTGAGGCGAGATATTCCACATGGTGACGAATTCGGCGGTTTTGGAGTTGCAAACAGGGGGATTTCGCCCTTGTGGCTGGCCCTTTGGCCGATTTCGGGCGCACTCACCCCTGCAGCCCCTGTAAAAGCCTGTGCCGCGCCATCCACAGATTGCTCAGCGAAAACAGCGTCATCAGGTTGGCCATGTTCTTGGCCAGTCCCCGGTACTTGACCTTGACGTAGCCGAACTGCCGCTTGATGACCCGAAACGGGTGTTCCACCTTGGCCCGGATGCTGGCCTTGGTCTGCTCCAGTTTCTCCAGGATCGCCCCCATCGGCGTACTCTTGTCCAACGCCCGGCGCTTGCCCGCACGCATGGCCACATGCCAATTCACTCTAATGTGCTGGACCTCTTCGCGCTTGGCTACGCCTTGGTAGCCGGCGTCGGCAAATACATCGGTTTCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCAATCAAGCCCTGATACCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 48788-54459 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLR01000040.1 Malikia spinosa strain 83 contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48788 28 100.0 32 ............................ AATCAGGAGTTTGAAATTAGCCATGCCATCCC 48848 28 100.0 32 ............................ AGTTGCAGACCTGCCGCAGCCGTCGCCAGTGG 48908 28 100.0 32 ............................ TAATAGCGACCCGCAGCAATGGAAAACTCCTG 48968 28 100.0 32 ............................ CTGGACCACGAGGACGCCAAACGCGTTGAACC 49028 28 100.0 32 ............................ TTCGAGCGCTTGACGCCGGAGATGGTGACTCG 49088 28 100.0 32 ............................ ATCGTCAACCCGATCACCGGGGGCGCTGCCTG 49148 28 100.0 32 ............................ TCACAGGAGGGGCGACGGTTGCGGTAGTCGAA 49208 28 100.0 32 ............................ TGTTGAGTCTGACCTAATGGCTCCTGGTTCAC 49268 28 100.0 32 ............................ TCGCAGAACCCGAACGGATCGCCGTTCTTGTC 49328 28 100.0 32 ............................ CAGGCCGATTTTGCGGCAGAGAGGGCCGCTGT 49388 28 100.0 32 ............................ ATCGAGACCAGAGCACTGGCGGACATTGCTCA 49448 28 100.0 32 ............................ AAGATCAGTGCGTTCCAACTCGGCAGTAGAAA 49508 28 100.0 32 ............................ AGAGTTGCCAATGTAAGCACCTGAGCCCTCTT 49568 28 100.0 32 ............................ AATACCCACGGCGAATGAGCCAGTACAGGTAC 49628 28 100.0 32 ............................ TCATCAATGACCAGGATGGCCCCATCGGGCAA 49688 28 100.0 32 ............................ AGTAACGAGGGGGCGATCATGCCGAATGTCAT 49748 28 100.0 32 ............................ AAGCACATTGACCCGGAAGACCTCTTCCAGAT 49808 28 100.0 32 ............................ GAGCAGCCACAACGTCTATCACAGGCGTTTTC 49868 28 100.0 32 ............................ TCCTGGAATTGCAATTCCTGTCGAGCCATCGC 49928 28 100.0 32 ............................ TGCAGCAGCACTGATGCCAGAAGCCAAGTCAC 49988 28 100.0 32 ............................ ATGCTGGCCACAAGGACGCTGGAAACGCTAGA 50048 28 100.0 33 ............................ TGCTGCCATGCGTTTTGCTGCCAATGCACCTAG 50109 28 100.0 32 ............................ ATACGCGCAGCATAAGAAACACATGCAGGTTC 50169 28 100.0 32 ............................ AGGTGCGGCACTCGTCATTAGAAAGGCCCGGA 50229 28 100.0 32 ............................ TAATCTCGGCACTTATTTTTATGTTTATGAGA 50289 28 100.0 32 ............................ GGTTCGTGGTATTCCCCGTGCTTTATTCATTG 50349 28 100.0 32 ............................ TGTTGAGTCTCCCCAGTCTGTCCCTGTCCCTG 50409 28 100.0 32 ............................ TGATCCGCAGGTTAATCCATTAACTCGTCCTT 50469 28 100.0 32 ............................ TCCTGGAATTGTTATACCTGTAGAGCCTATCC 50529 28 100.0 32 ............................ TCGCCCGTGACCAGCCGTTTATCCGTGGCTGT 50589 28 100.0 32 ............................ ATTGTGTGCGGCGCTCTCATGGCTCGGCTTGC 50649 28 100.0 32 ............................ CTTCGTCTCGCCATTTGCCGGGTGCCAATGTG 50709 28 100.0 32 ............................ ACCAACATTTAATGAGCCATTAAATCGAACGG 50769 28 100.0 32 ............................ ATGAGCGCACCACAGACGATAGACAGAGCAGA 50829 28 100.0 32 ............................ CTGTCATGAAATTACAAATTGTGGTGAATTCA 50889 28 100.0 32 ............................ TAGAATTATTGCCGGTGCTATCGTTTTAAATC 50949 28 100.0 32 ............................ TCGTCAATTACCAGGATTGCACCATCTGGTAA 51009 28 100.0 32 ............................ ATTTCGGACCCTCATCCGCTGCACCAATTCAA 51069 28 100.0 32 ............................ TGGTCGGGCTCGATCTCGGCCAGGGCGATCAT 51129 28 100.0 32 ............................ AACGACAACCGGCATGACGCTGATTTTTCTCA 51189 28 100.0 32 ............................ TACCCGGTCGAGGTGTCTATCCTCTCCAAGAT 51249 28 100.0 32 ............................ AAGAAAACCGGCAAGCCGTATTCGATCGGCAA 51309 28 100.0 32 ............................ ACAGTGGGTGCCGGTGCGGGTTGCGACTGCGC 51369 28 100.0 32 ............................ ACGACGGCCAGCTGATCCACATGCTGCACTAC 51429 28 100.0 32 ............................ TGGCCCGCAGCGTCTCCAAGTGGGTATGGCGC 51489 28 100.0 32 ............................ AACGTGGTCAAGGGTATGGAAATCCTGGGGAC 51549 28 100.0 32 ............................ TTTCGGCAATCATTATAAGGGACTACCTCACT 51609 28 100.0 32 ............................ AACACCTGAGGGCACCCACATGAGCATCAACC 51669 28 100.0 32 ............................ ACAGCCATTACCAATAAGCTGGACGCGCTGTA 51729 28 100.0 32 ............................ ATGAGCAAGCGCGCGGGCGTTTCGTTCCGCAA 51789 28 100.0 32 ............................ TGCACGGTGGTCAGCACTCGGCCGGGATCGAC 51849 28 100.0 32 ............................ TCATCGGCTCCCCCGAGTCGGTCTCTTCGTCT 51909 28 100.0 32 ............................ TAATACCGATCCCCAGAAATGGAGAACTCCTG 51969 28 100.0 32 ............................ TCTCCAAGATCGAGCACCTCCAGCCGCCGTTC 52029 28 100.0 32 ............................ TGACTGGGCACCGGTCGAGCGCATCTGCCAGG 52089 28 100.0 32 ............................ ATACAGCATGGCATGAGTCATTTTATGAATGG 52149 28 100.0 32 ............................ TACCCGTAAAAAATTGTCACATGATGAGTTTT 52209 28 100.0 32 ............................ ATGATGACCGCCTGGGACGGGTCATGAACGTC 52269 28 100.0 32 ............................ ATCGTCAAGTTTGACAAAGTAGCGGACGCCGT 52329 28 100.0 32 ............................ ATGAGTACCGGTCTTGAGCCGGGATGCCTGCT 52389 28 100.0 32 ............................ GCCCTCCTGAGAAACAATCTCAATACAGCAAA 52449 28 100.0 32 ............................ CTCTTCGATTGCCACTTGACCCGCGTCGACCT 52509 28 100.0 32 ............................ ATCACCGCGAACGTGCCCGCTTGGACGTGTCC 52569 28 100.0 32 ............................ GTTGTTCAGCAATGGTCAGGACTGCCGGCTTG 52629 28 100.0 32 ............................ TTGCTGCCCATGTAAAAGGAACGCTCGCGCCC 52689 28 100.0 32 ............................ AGCAGGAATAGATGGGCCGCCGCGCCAGTCGT 52749 28 100.0 32 ............................ ACCGACAAGGAACGCCTCGATGCCGAGCTCGA 52809 28 96.4 32 ...........................A GATAGCGTCGGCAAAGCCTTCGGCCATGGCTT 52869 28 96.4 32 ...........................A CGGTGGATTGATCCGAATGATTTTGCCGGCGA 52929 28 96.4 32 ...........................A GACTCGAATCGGCAGTCGGTGTGATGCTCGAA 52989 28 96.4 32 ...........................A CGAAAAGCTGAACGAGCGCCGGGTGGCGATCA 53049 28 96.4 32 ...........................A GCCACGCTGCGCCAGTCCGAGGGCCGCATCCT 53109 28 96.4 32 ...........................A AGATAGCGGGGCTGGCCACGGTGCCGGCCATG 53169 28 96.4 32 ...........................A GGGAGCCGATGGGCATTTGTGGCGCGCGCAAG 53229 28 96.4 32 ...........................A AGTGCCAGGCCGCCACTGACGTCATCGAAGCT 53289 28 92.9 32 ....G......................A CGGAGCTGCGCGACCCGGCGAGCATGACGCGC 53349 28 96.4 32 ...........................A ACCCAGCGCCGGCACCTGCGGACGATCCAGAG 53409 28 96.4 32 ...........................A GGTGAGCGCAGACAAGCTGTACCGGGTCAACG 53469 28 92.9 32 ...............A...........A TCGTCCAGCTTGACCGCCGCCTTGAACGGCTC 53529 28 96.4 32 ...........................A AAGAAGCAACCGAAGGGCGAAAAACCATTCGA 53589 28 96.4 32 ...........................A GTGCAGGTCATCGAACAGTCGGCGCGTGTCCG 53649 28 89.3 32 .........T.........T.......A TCTGGGCGTCTCTGTAGGTGGCGCGCAGCGTC 53709 28 96.4 32 ...........................A TTGCCCGAGGTCGACCACTTCGACCACCTACC 53769 28 96.4 32 ...........................A ACATCAACGGCGACCCGACCGACAACCGCATC 53829 28 92.9 32 .....................C.....A CGGACCAGGGCATCACCACGGGTATGCTGCTG 53889 28 92.9 32 ......................T....A TGTTCAAGGGTGGCCGTTCGGTCGAGTTCGAC 53949 28 96.4 33 ...........................A TTGGTGGAATTTTAAGCCTGACCGGATTCCAAA A [53957] 54011 28 96.4 32 ...........................A CGGTGATGACGGCTGACAGCGACACGACCGCG 54071 28 92.9 32 ......................T....A GTTACGCAGGAGCTGCCGACCTGATGGACAAG 54131 28 92.9 32 ...........T...............A AAGATGGATATCCGCCATCGGCAACTGATGGA 54191 28 96.4 32 ...........................A CAACCCTTGTCGCCACGAGCCTTGCGCAGGTC 54251 28 96.4 32 ...........................A TCGTCGACGGTCCAGTAGTGCCGAAAGGCGAG 54311 28 92.9 32 .........T.................A TGCTCGAAAGTCATGAATCGGCCAGAAGGGGC A [54332] 54372 28 96.4 32 ...........................A GCTATGCGCGGCAAGATCACGTTCACCCGACC 54432 28 92.9 0 ........T..................A | ========== ====== ====== ====== ============================ ================================= ================== 95 28 98.6 32 ATTCACTGCCGCATAGGCAGCTCAGAAT # Left flank : TGGCTCAAAGGCATGCGGGATCATCTGGAACAGCCGCAACCGGAACTTTTGAAAGTGCCAGACATTTGTCAGGGGCACCGCGTGGTTCGTCGCGTCCAGATCCAAAGTAGCGCAGAGCGTCTACGCCGACGCCTTGTCAAACGCCATCCGGGTCAAGTGGATGCCGAAGAGGCCTTGCGGCGAATCCCTGATGAGGCCGCCGAGCGTACTTCGCTACCCTATGTCCAACTGCACAGTCGCAGCACCGGTCAGCACTTTTTCCTGTTCGTTCAGCATGGACCGCTGCAGACCACGCCACTGCCCGGTGAGTTCAGCGCTTACGGGTTGAGTCAGCAAGGTGCAACGGTTCCCTGGTTCTGATCAGGCTCGCACCCTTTTTTCTTCGAGGAGGTTCAGTCCTATTGAAATCAACAGGTTACGTTGGTGTCCGGAAGAATGGTATTGTCGATGGTTTTCGGAAATATCTTTTAAGATCAATGCTTTAGCCTCAAGATGGTCTT # Right flank : ATCGACCAGCTGGAACGGCTCTATGGTCTGCAGATTCACTGCTGTACTCGCTAGGCCAGGGTCGGCCTGATATAGTCGCTCGCCCGCCCGGGCAGAGCGGTATCGGCACGGCGTGACATCGAAGATGTGCTGCCAGCCAGGCTATGCTGCAAGAAACTGATTTTCCAGAACATTCATAGCCCGCAGGGCATGGTCACACCGCGCTTGGCCAAGGCGGCGGTGAAGACGCGCCAGCCGTCGGCGGCTTCGGGCAGTGGGTCGTCCCCGCGCTTGCCGCCGTCAAAGTGGCAGAACTTCTCGATCGCAGTACGACGTACTGGGCGCGGGTTCTTGATCTCGGGTGAGGTGTAATCGAGCAGCTTGAGGTCTATGCCGGCCTCGACCAGATAGGCGGCCCTGTAGAAGTCGGTGCCGTTCAAGGCGTAGTGCAGCGCCGAGCCTGAAATCGGATGCACATAGTTGATGTCGGCGCCACGCTCAACCAGCAGCTTGATGACTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGCATAGGCAGCTCAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 770-204 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLR01000084.1 Malikia spinosa strain 83 contig_84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 769 29 100.0 38 ............................. TCGTATTCACCTGGGCTCACCCCGTCTAACAGGTCCGA 702 29 100.0 38 ............................. TTTGATTTGCGGGCCTCGGACGCTGCGTCCGAGTCCGA 635 29 100.0 38 ............................. GCGGGAACTTCGCCGTCGAACTTGTCGTCCATGTCCGA 568 29 100.0 41 ............................. CGGACATCGTTCCGATGACCGTGCCCCAGTGAATGGTCCAG 498 29 100.0 39 ............................. AACCCAAGAGTCTTCTTCAGGACGGACATCATTGTCCAG 430 29 100.0 37 ............................. CGCGGCCTTCGTCACTAGCTTCTCGCATTTTGTCCGA 364 29 100.0 37 ............................. ATCAGCCACTCGGTGAGAGCCTTCTGGTTCGGTCTTA 298 29 89.7 37 .............GA.....A........ TCAGTTGAGCTTGCAGAGCGTTCACTTTGGTGTCCGA 232 29 86.2 0 .........................TTTA | ========== ====== ====== ====== ============================= ========================================= ================== 9 29 97.3 38 CATGCCCCGTTACCGAAGGGGATTAAGAC # Left flank : CGTGGGAAGTCCCTGTAGTTTTCTGAGACGACCCCTAATACCAGTCATGGTGGTCCAGTTTTTTCCTGTCCG # Right flank : AGGTGGCAATGATTGACCGGAACGTGTAATCTATTGACCATGGACAAGATCGACGCGCGAAAGCTTTCCCCGGATGCGCTCAAGGCTCTGCGCAGCCAGGCCATGCGCCTGCGCCAAGAGCTGGGGCTGCCCTGGCGCGAGATCGCGCGGGTCATGGGCTTGAACACCACCACCGTGTTCGGCTGGGCCCAGCGCTACGCGGCT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATGCCCCGTTACCGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //