Array 1 32509-31320 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETM01000076.1 Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055 isolate FDA_2010_222_Clinical-NC-4 SEEM0055_172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32508 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 32447 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 32386 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 32325 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 32264 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 32203 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 32142 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 32081 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 32020 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 31959 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 31898 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 31837 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 31776 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 31715 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 31654 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 31593 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 31532 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 31471 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 31410 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 31349 29 93.1 0 A...........T................ | A [31322] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49709-48643 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETM01000076.1 Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055 isolate FDA_2010_222_Clinical-NC-4 SEEM0055_172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49708 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 49647 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 49586 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 49525 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 49464 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 49403 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 49342 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 49281 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 49220 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 49158 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 49097 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 49036 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 48975 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 48914 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 48853 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 48792 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 48731 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 48670 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //