Array 1 721119-717959 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFG01000003.1 Actinomadura chibensis strain JCM 14158 NODE_3_length_744793_cov_54.676439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 721118 30 96.7 31 .............................A GGTGCCGGTCGAAGTGCAGGACGCCGATCTT 721057 30 100.0 31 .............................. CCGGTCAGGTGGCCGCCGTCCTCGGCGTCCT 720996 30 100.0 31 .............................. ATCACCGGCCCTAGGTTTTCGGCCATGCCGG 720935 30 96.7 31 .............................C TCCGCATCGAGGGCCTCCTCCCCGGCACCGA 720874 30 96.7 31 .............................T GGCAAGCCGCGATGTCGGCAACGGTGGTGTG 720813 30 100.0 31 .............................. GGAAGAAGAGGCTCGTCAAGGTTGTGTTCGA 720752 30 96.7 31 .............................T TGGCGGAGGTGACTCCGCCCTGCATCAAGAA 720691 30 96.7 31 .............................T TCTCAAGGTTGATGTGACCGAGGTTGCATGC 720630 30 100.0 31 .............................. ACACTGCGGCCTGTGCAACCTCCGGCGCGGC 720569 30 96.7 31 ............................A. GTTGCTGTAGGCCCAGGAGCCTCCGTAGGCG 720508 30 93.3 31 ............................AC TCGGGATTGTGCCCTGATGGGTCCCGCTGGG 720447 30 93.3 31 ............................TT TCCGGAAATCGGCCAGGAGCACTCCCAGGTG 720386 30 100.0 31 .............................. GGCCAGCGGCGCCCTTCATCGACTTGCCGTG 720325 30 96.7 31 .............................A TCACGCCACCGCCTGACCGTCCCGGTGGGTC 720264 30 100.0 31 .............................. TCACGGCCGTGGCGATGGCCGCCGCCCAGGC 720203 30 100.0 31 .............................. TCACGGCCGTGGCGATGGCCGCCGCCCAGGC 720142 30 100.0 31 .............................. AGACACCCGGCCCCCACAACGACGACTGCGA 720081 30 96.7 31 .............................A AGGGCTACGGCGCCGAGATGGGCCAGGTGAC 720020 30 93.3 31 ............................TA GGCCGAGAGTGAGACCGACTTGGACGCCCGC 719959 30 96.7 31 .............................T CACCGCCGTGAAGAACGGCGCGGTTGGCGTT 719898 30 96.7 35 ........................G..... AACTCCGCCGCCGCGCGGTGGAACAGGCAGCCGTG 719833 30 90.0 31 .................A......G....A CTCCCGGCCGCCTGCTCGACGCGCTGTCGAT 719772 30 93.3 31 ........................G....T CGGGCGCAAGACCGCGCAAGGTGAGGTAGTT 719711 30 93.3 31 ........................G....A GGTCGTAGCCCGAGATCGGGCCGACGATCGG 719650 30 96.7 31 ........................G..... CGATGTGGGAGAGCGCCACGTAGGAGCCGGG 719589 30 93.3 31 ....................A...G..... GGTCGTCGAAGGCCGCACTGTCGGCTAGGAC 719528 30 83.3 31 .A.T.T..........T.......G..... TGGCGGCGGGCAGCGTGCGGTCGTTGGAGGG 719467 30 86.7 31 ..........T.............G...TA GCGGTCACCGCCCGCCCGCCCGGAGACGCCT 719406 30 90.0 31 ...............A........G....A GCTTGACCTTGAACGTCTGGGCGGAGTTTTT 719345 30 90.0 31 A.......................G....C CGGCCTGGCCCGCGACCAAGCTCCAGCTCGG CGCG [719329] 719280 30 90.0 31 ..............T.........G....C TGCTCTACGCAGGCGCGGAGCACGTCATCCG 719219 29 90.0 31 ....................-...G....A AATGGCTGCGCGACCCGAACGCACTGAACGG 719159 30 96.7 31 ........................G..... CTGGACTACACCGGATAGGCCGCCTTCACCC 719098 30 90.0 31 .................A......G....C ACGCCGAGCTCTTTGAGCCGCGCTTGCTGGG 719037 30 96.7 31 ........................G..... TCCCAGCCTTGGTGGTGACTAGCCTGTAGGA 718976 30 90.0 31 .C......................G....C CGGCGGGGGCCGTTTCTCAATTCCCGGGACC 718915 30 96.7 31 ........................G..... TCAACACCCGGTTCTGCCTGAGCGTGGCAGA 718854 30 93.3 31 ........................G....C TCACCAGCACCAGGAGCGGACTTGTCCCCGT 718793 30 90.0 31 ........................G...TC GTTCAGCTTCCCGAGGACCAGACTCGGGAGA 718732 30 96.7 31 .............................A CCCCCGGGCCCTCCATCCTGCGTTGGCGCAA 718671 30 83.3 31 A.....T.......A.........GC.... TCCTAGTCTTGGTGGTGACTAGCGTGTAGGA 718610 30 80.0 31 .C...T...A..T...........G....T CAAAACGGGTTGTCACATGCCGCGCACCCAC 718549 30 96.7 31 ..............A............... CCGGATTCACCTGGGCCAACCCGTTCACTAG 718488 30 90.0 20 .......T...A..............G... TCCCTCAGTGGACCTGTGAG G,G,G [718458,718462,718464] Deletion [718439] 718435 30 96.7 31 ........................G..... TGCTCGGCGTCGAGCGTCGGCGTGAGGCGCC 718374 30 93.3 31 .........A..............G..... TCTGCGAGGTCAGCAGCTTCGCCAACAACTT 718313 30 96.7 31 ........................G..... GGCAGAGCACGCCGACGTGGACGCCGCCCGC 718252 30 93.3 31 ........................G....T CCACGGCGTTCGTGAACCTGTCCGAGGGCAT 718191 30 93.3 31 ........................G....T CCACGGCGTTCGTGAACCTGTCCGAGGGCAT 718130 30 93.3 31 ........................G....A GGATGTTCGCCTCGAACTGGATCGTGGCCGG 718069 30 93.3 51 ............T...........G..... CGTACGCGGGGATGGTCCTGCTTCCAGGCATGAGACATCCCGTGCCTTACA 717988 30 83.3 0 .......G....T...........GG...A | ========== ====== ====== ====== ============================== =================================================== ================== 52 30 94.0 31 GTGCTCCCCGCGCACGCGGGGATGCTCCCG # Left flank : CGCCCCCTGCTTCGTCTTCGAACACAAGCGGAGTCAACACGATGGAAGCGATCATCTTCTCCCGGTCGGCACCACCGACCACAAGAGGCCACTTGAGCCCTCAACCTCACCGGCACTGGAAGTACCACACCTCTGCATAAATTGGGCAGACCAGACAGATCTATGACATGCCCCCGAAACACCAAATCGCGCGCCGAAGCGGGCCACCGCCAGTTCGCTAAGATCCAGCAACCAGAGCCACTCACACAGCGCATCTCCGGACACCCTCAGAGATGGCACCGCCGCCCACCCTTCCGCGAGGCAGCACTCTTCCGATCATGACCTTGAGCACGAGTCGAACACCCCGGGCCGAACCAGCCGACCACAACTCCTCACCAGCCACCAAATCCGGCGAACCGCAGACAACTCATACGACATCAACCCGCCCACCCGAAATGTCCTTTTCAGCAGAAGTGCTTCAGAACGGCCCAACCGCTCCATAAAGCCCCAGGTCAGACAGA # Right flank : CCGCCCGGCGGGTCAAGGGGTCGAGGAAGCTGTGCTTGCCGACGTGCTTTTGCCCGGAGGGTTCTTGACGGCCGTCCGAGACCGTGGGGCGCCTGGTTGGGAATTGTGGGGACGATTGCTGTTGAACAGCAGGGCCAACGTTCGTCGTTGGGGCCGGTCTTTGCTGAGTCTGATCAGGTGGACGTGCGACGCGCCCTGCGAGAAAGCACAGTCGTCGCCATGACGCTGGCCGTAAGCCCTCCCAGGAGCATGACCGTCGATGGGGACGTGCGGTCCACGACGACGCCTCCCATAAGGGCACCGGTCGAGAGCGTCGCTTGGAACGATGCCGTGAAGAGCACGGACGCGGCCTCCGGTGCATGCGGGGCCGCCCTGACGAACAGAGTCTGCGAACAGACCGGAACTGCGCCGTAGCCGACGCCCCACACGATGAGTAGTGCGATTGCGCCCGCGTCCCATTGGCCGAGGAGTGGAAACGTCAGTGTGGCGACGGCGATGAG # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGCTCCCG # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 730816-731206 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFG01000003.1 Actinomadura chibensis strain JCM 14158 NODE_3_length_744793_cov_54.676439, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 730816 29 96.6 32 C............................ GCGATCAAGACCGGCGTTCTCACCGCGATCAA 730877 29 100.0 32 ............................. GCGATCAAGACCGGCGTTCTCACCGCGATCAA 730938 29 100.0 32 ............................. GCGTCTCGCGTGTAGGCGTTCATCTTCGACGC 730999 29 93.1 32 .........G......T............ GACGCGGGAGGGCGGTCGTCCAAGCCGAGCAT 731060 29 89.7 89 ......T..G...............C... TCGAAGGGCTCCCTCCTGCCGATGGAAGGGGGTACTCCCCGCGCGCGGGATGGGCCCAGCGTGGACCGGCGCGGGGACTCGGTGACATG 731178 29 72.4 0 .........G.GTA...C.......CT.A | ========== ====== ====== ====== ============================= ========================================================================================= ================== 6 29 92.0 44 GTGCTCCCCACACGCGCGGGGATGGTCCC # Left flank : ACGACACCGACCACGTCACCCTGCAAAGCGACCACGGCATGAACGTCGAGTCCGGACGCAACTACGCCGAAGACGTGCACTGGTGACCATCATCATCCTCACCAACTGCCCCGCCGGCCTCCGCGGCTTCCTCACCCGCTGGCTGATGGAGATCGCCCCCGGCGTCTTCATCGGCGGCCCCTCCGCCCGCATCAGACAGGCCCTCTGGGACGAAGTGCACCAATACGCCGACACCGGCCGCGCCCTGCTCTGCTACACCACCAACAACGAACAGGGCTTCACCTTCGAAACCCGCGACCACAAATGGCACCCCATCGACCACGACGGCCTGACCCTGCTCCGCCGCCCCAAGACCCAGCCGACCATTTCCGCAAAACCCCCGCCCGCAGGCTGGAGCAAGGCCTCCAAACGCCGCCGCTACGGCCGCCGCTGACCAAGCCCCAAACATAGAAAGCACTCCAATACAAGCCAACCTCCCGCCAAACCCACAGGCCCCCAGG # Right flank : ATTCACGACGAAACTCGAAGTCGAGGTCAATGGCTTCGGCGCCGAAACTGCATGTCAGCGCGGCCGGATTGCTGGCCAAGACCTTCCCGCGCTGATCGCAACGGACCAGGCCGCCAAGCTGACCGGCGCCCGAACTGAAACTATCCGCGAGGCGCTGTCTCCACCTCCGACGCCACCACTGCGCGCCGATCCACAAGATCCCCGCTGAAGGCGTCACCATGGTCGCTCACCAGCGCTTTCGCGTCGGCCGAGCCACGCATGCCTATGACGTTCGTAAATGGCCCCGGCAGGGGGACCACTGGTGGGGTCAGATCGGAACGTGATCACGGTTTGAAATGGCCCCGTGGGACGGCTTGGTTTGCCCCCGAGGCTTGTGCAGTCACGGTTAGTCCGTCGAGAAATCAAGGGATTTGGCTGACCAGGGGAAGGTGCATGCGGCGGTAGCGGTTGAGGACGCTCGGCGGCCCAGTCGGCCGGGAATAAGTCAGGCGCTCACGGAG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 734746-733320 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFG01000003.1 Actinomadura chibensis strain JCM 14158 NODE_3_length_744793_cov_54.676439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 734745 30 100.0 31 .............................. GGTGGCCGGAGGGCGCGCCGCTGGCGGTGCT 734684 30 100.0 31 .............................. CGATGTTCACCCCGTCACCCGCCCCTCGACC 734623 30 100.0 31 .............................. CCTCTTCGAGGATCCCCCGGACGATGCGCTC 734562 30 93.3 31 ............................TC TTTACTGTTCAGAGCCCTATTTCACTCTCTG 734501 30 96.7 31 .............................G AGCCGGACGCCTCCGCCGCACCGGCGGCCGC 734440 30 96.7 31 .............................A ACCCGGACCGGCTTGACGTCATGTGGGCTGC 734379 30 96.7 31 .............................G GGGGCGGCCCCTCCCCCAGTCTTTCAGCTAT 734318 30 96.7 31 .............................G GCTCGGCGTCCACGTCACCGCCGACGCTGTC 734257 30 96.7 31 .............................G GCAAGGCCCACGGTTTCGCGACTTCGAAGGG 734196 30 100.0 31 .............................. TCCGCCCGGCGCGCAGGCCCTCGCCCTCAAG 734135 30 100.0 31 .............................. TCCGCCCGGCGCGCAGGCCCTCGCCCTCAAG 734074 30 96.7 31 .............................A CGATCAAGATCGTGTGGATCGCGATCCAGAT 734013 30 96.7 31 .............................A TCCTCACCGCCCGCGGCGCGCTGAAGGGCGG 733952 30 96.7 31 .............................G CCTTCTGGTAGGTGGAGATCCCTGTGGCGTT 733891 30 96.7 31 .............................C CCATGGCCGTCACCTCCACGCCGACACTGCG 733830 30 100.0 31 .............................. CGGAGATCGTCAGGCGCCCGTGCTTGTCCCA 733769 30 93.3 31 ............................TG AACAGGCCCGCGTCACAGGAAAGGGCTGAAC 733708 30 100.0 31 .............................. AGGGACGTACAGCAACAAGATCGGTCGGGAG 733647 30 90.0 31 .........A..................TC GGTCCGCGCGGGCGGCGGCCCGGTTAGCGGA 733586 30 96.7 31 .............................C GGGGGTGGCTGCAGGAGCGGCTCGGGTACGC 733525 30 96.7 32 .............................C GGCGACCGCAGGTGGCGCAGACCCACAACGCG 733463 30 93.3 31 .......T.....................C CGGACGACTTCGAGAGGCACACGGCGCTCGG 733402 30 86.7 22 .........................CGT.G TCCGCGCGGGTACCCGGCTGGT Deletion [733351] 733350 30 90.0 0 ..A..................A.......C | C [733325] ========== ====== ====== ====== ============================== ================================ ================== 24 30 96.3 31 GTGCTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CGATGATCACCCGTCAGGTAAGGGCCCCGCGCTGTGGCCAGCACCACACCAGCCCTCCTCCCGCCCCGGCCGGAACGACCCGTCACTGCGCGACGAGGGCGCCTCGCCGTCCGACGTCCCGAGCCTGGACGACCAAGAGGCATGGCTACTCTCGGAACGGACGAGGGACTGACCCAAGATGCGTGGGCATACGCCTGCGCGGCACCCGAGCCTGACGACCATCCATCCCCGCGTGCACAGGGAACACAAGTAGCCCGCGCACGACGACACGCGCGTCTCCCATGAGCCCGGCGCTCCCAGGGACGAGTCTCTTCTGATCACGGCCGTGGCGGCGAGCCAAACAGCGTGGACCAGAGATGCAGCCCATATGCTCTTCTCTGACCAGAACCAGGAAAGTAGGACAACTGCACGCGACGCCGAATCGGCTGCCCGAAATGCCCCCACCCGCAAAAGTGCTTCAAAACAGCCCCACCGCTCTCTAAACCCCCAGGTCAGGAAGA # Right flank : TTACCTAGACAAGGCAGGCGCCTGCACGTCGGAGAGACGAAGTCGGTCCAGACGGAGGTGCCCGATCCTCGGTTCCAGGTGGACGACGAGGTGAGTCCGGTTGGTGCGTAGCGCATGTGGGCCGGGAGATCTTGGACGAGACGGAACCCAGGACCTGTTGGACTAGTCCAGGTTCTTGACGGTCTCACGAGTTCGTGGACGCTGCTCGCCGGGCCGAGCCAATAGAAGCAAGGGCGTGGCGGGATCGCCTTTTACCGGGGACGGGGTGGGTTGGCGCACTCTTTCCAGGCGAATTCATAGACGTCGGCGTAGGGCAGTTACATAAAGTTCTTCTTGGACTTGTCCGAGGTGCCGATGTCGATGAGCATACCCGTCTGGATGCGGATGAGGGGTTCCTCGCTGCAAGGTTTGTACCTAAGTTCGGGACGCCTGGCGTGTTCTCACCCGTCAGGGGCTTCAGGTGTCTTGACCAAGCAAGAGTTATCCCGCTTCTCTCGTCA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48117-49918 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFG01000011.1 Actinomadura chibensis strain JCM 14158 NODE_11_length_287057_cov_54.776134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 48117 30 96.7 31 .............................T GGGACCGCGCCGGGCTGTGGTGGCTGGTCGT 48178 30 100.0 31 .............................. TCCGCGTCCAGGACCTGTCGGCCGCCCCGGC 48239 30 96.7 31 .............................G ACCACCGTGTGCGGGGTGGTGGTCCGCCCTC 48300 30 100.0 31 .............................. TGACCGCCGCGTACGTGGTGAAGGCCGCGTC 48361 30 100.0 31 .............................. CCAGCGAGCAGGACGGCGGGGCCGCCAACAG 48422 30 96.7 31 .............................T GTGGGAACGTCCCAATTTCACAAGGGGACAG 48483 30 96.7 31 .............................C GGGAGCCCTTCGACTGGGCGGCCGCGCTGGA 48544 30 96.7 31 .............................G CGTAGGTCAGCGGTTTTTGAGGGTCATGATC 48605 30 96.7 31 .............................C GGGAGCCCTTCGACTGGGCGGCCGCGCTGGA 48666 30 100.0 30 .............................. CCCGGAGAAGACCCCGTGACGGCTATCTGG C [48692] 48727 30 93.3 31 .....................G.......C GGAACCAGAGACCGCCAGCCATCCTTAGATG 48788 30 93.3 31 .....................G.......G TCCCCGGCAAGGGTCACTTCTTCGAGGAGGA 48849 30 93.3 31 .....................G.......G AGGTGTGGCGGCACCTGGAACGCCACGAGCG 48910 30 93.3 31 .....................G.......G CGTCGTCTTCGGGCCGGGACACGTGCCCGGC 48971 30 96.7 31 .....................G........ ACGGCACTGGTGCGGCGACCGACCGCTTCAA 49032 30 90.0 31 .........T...........G.......C GGCCTACGGGACCGGTCGTGAGCACCCTTGA 49093 30 90.0 31 .........T...........G.......C GGCCTACGGGACCGGTCGTGAGCACCCTTGA 49154 30 93.3 31 .....................G.......C GTCCCGAGGTCCACGACGAACAGCGTCGTGA 49215 30 90.0 31 ...................C.G.......C CCGTCAACAACCGAGTCACCGCCCCCTCACG A [49243] 49277 30 93.3 31 .....................G.......G GCACGGCGCGCTTCCGGCCGCCCTTGCCCTG 49338 30 96.7 31 .....................G........ AGACCGGCCGCATCACCGAAACCAGTGACTA 49399 30 93.3 32 .................C...........C CGGCCGCCGTGGTACTGCTCTGGTTCGCCGTT 49461 30 100.0 31 .............................. CGAACCCGAAGGTCCGATCGGCCAAGGTCAT 49522 30 96.7 31 .............................C GCGGCGCGGCGGAGTTGCTGGTGGAGGCTGG 49583 30 96.7 32 .............................G TCATGGGCTTGTGATGACCGGCGTCCGACAGG 49645 30 100.0 31 .............................. CCGGCCGCGAGGCGTGTCCCGACAACGGCCA 49706 30 96.7 31 .............................G TAGACGTGTCGCTACGTTGCTCCCCGTCCCC 49767 30 93.3 31 .........................A...G GCGAGATCGAGCGGCGGATTGTCGCGTTCGA 49828 30 80.0 31 .........AG...T..........AA..T ACGGTCCCGCGTAGGAACCGGCCGCCGCACC 49889 30 93.3 0 C...............T............. | ========== ====== ====== ====== ============================== ================================ ================== 30 30 95.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : CCGCGACCCGGCGAACCCGGCCCACGAACTGCGGAATCTGGTGGACGACCGCATCGGCGAATGGGCCCGCCTGAACCGGCTGGTGTATCGTCCGCGCGCTCACCTACAAGGCGTCCAAGAACATCGAACGCTCCGACCTGCGCACCTGACTGTCCACCGGAACCGGCCTCGCCGTCATTCGCCTACCCGCCCACACCTCTTAGGAGGCCATCTAGCCTTTGGTCGGTTGGCCGCGCCCTGCTACACCACCAACGACGAGCAAGACTCCACCTTCGAAACCCGCGACCGCAAATGGCACTCCATCGACCACGACGGCCCGAACCTGCTCCACCACCCGAAGACCCAGTCGACCATTTCTTCCGAGCCCCCTTCTGCGGGCTGGAGCAAGGCATCAAGACGCCGATGCTACGGCCGCCACTGACCCGAGCCCGAAATGTCGGAATCTGCGAAAGTGCTTCAGAACGGCCCAACCGCTCCATAGAGTCCCAGGTCAGGAAGAG # Right flank : AAGCTCGGTTCCGGCCACCTCTGGCCCACGCGATGGAAGGCGTTCGGGGTGCCGAGGTCGGTGTGCGGGAACCCCGCATGGGGATCAGCGCGCGCCAGGGACCGTCCCCGCGTCCGCGGGGAGCATCGCTCATGGTGTCTAGGCTCGGAGCGCAAATGGCACTCCATCGACCACGACGGCCTGAACCTGCTCCGCCGCCCGAAGACCCAGTCGGCCATTTCTTTCGAGCCCTCGCCTGCGGGCTGCAGCAAGGTATCAAGACGCCGACGCTACGGTCGCCACTGACCCGAGCTCGAAATTTCGGAATCTGCGAAAGTGCTTCAGAACGGCCCGACCGCTCCATAGAGTCCCAGGTCAGGAAGAGCGCTCCCCGCGCACGCGGGGGTGGTCTTCTCGGGAAGATCGTGAAAGGGGCCTCCACGCCGCGCTCCCCGCGCACGCGGGGGTGGTCTCTCCCAGCCGTGCACCTCGGCACTCTGCCGGTGGCGCTCCCCGCGCAC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50281-50674 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFG01000011.1 Actinomadura chibensis strain JCM 14158 NODE_11_length_287057_cov_54.776134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50281 29 96.6 32 ............................T CTCGGGAAGATCGTGAAAGGGGCCTCCACGCC 50342 29 100.0 32 ............................. TCCCAGCCGTGCACCTCGGCACTCTGCCGGTG 50403 29 100.0 32 ............................. TCGGCGTCCTGGCGGGCGTCCACCGCGCCGTG 50464 29 100.0 32 ............................. ACGGTCGTGTCACCACACGCGGAACAGCGGAA 50525 29 96.6 32 ...........................C. CTGCTCGATCAGCCGGAACAGGTACGGCGGCC 50586 28 89.7 32 .T...............-.........C. GCGCGGCGGGCGCGGACCAGCAGCATCGTGTA 50646 29 89.7 0 ..........T.....T....A....... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GCGCTCCCCGCGCACGCGGGGGTGGTCTC # Left flank : CGCGGGGATGGACCCGGCGAGATCGAGCGGCGGATTGTCGCGTTCGAGTGCTCCCCAGGCATGCGGGGATGGAACCTACGGTCCCGCGTAGGAACCGGCCGCCGCACCCTGCTCCCCGCGCACGTGGGGATGGTCCCAAGCTCGGTTCCGGCCACCTCTGGCCCACGCGATGGAAGGCGTTCGGGGTGCCGAGGTCGGTGTGCGGGAACCCCGCATGGGGATCAGCGCGCGCCAGGGACCGTCCCCGCGTCCGCGGGGAGCATCGCTCATGGTGTCTAGGCTCGGAGCGCAAATGGCACTCCATCGACCACGACGGCCTGAACCTGCTCCGCCGCCCGAAGACCCAGTCGGCCATTTCTTTCGAGCCCTCGCCTGCGGGCTGCAGCAAGGTATCAAGACGCCGACGCTACGGTCGCCACTGACCCGAGCTCGAAATTTCGGAATCTGCGAAAGTGCTTCAGAACGGCCCGACCGCTCCATAGAGTCCCAGGTCAGGAAGA # Right flank : CAAGCTCGCGTCCGGCTACCTCTGGCCCGCGCGATGGAACGCGTTCGGGGTTCCGAGGTCGGTGTGGGAACCAGCGTGCGCCAGGGGCCGTCTCCGCGTTTCGGGGAGCGTCGTTCGTGGTGCCTAGGGGCGGTTTGCCCGTGGCGGCGGCTATTCGTCGGTGCTCGGTGGGTGTGGGCTGCCTCGATGGCCACGTTGGTGAGGCCGTCGGGGCGGGGGTGTGCCCGGTCATGGCCATCGGGGTTGACAGGGGGTGGGGAGGCGCGAACGCTAAAGCTCATAAGCTTCTAATCAATCGCAGGGGGCGTCATGGGGCGTGGGGCGCGGTTATCGGGCGGTGGGCTGGCGGTGCTGCTGCTCGGGCTGGCGGGTTGTGGGGGTGGCGGGGCCGGGCGGGCCGAGGGGGCGATCACGGTGTGGGACTACTACGGCGGGTCCACGCCGATCAAGCCGGTCATCGCCGAGTTCGAGCGGGCCAATCCGAAGATCAAGGTGAAGTA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCACGCGGGGGTGGTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 75661-75326 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFG01000011.1 Actinomadura chibensis strain JCM 14158 NODE_11_length_287057_cov_54.776134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75660 29 100.0 32 ............................. GGGTTGAAGGGGCGGCCGGCCGGGGGTGGGCG 75599 29 96.6 33 ............................A CATGTACGGCGCCCCGGCCGCCGGAACCGACGG 75537 29 100.0 32 ............................. TGGTCGCGGCAATGGAGAACCTGTGCGACGGC 75476 29 100.0 32 ............................. ATCTCACGCGTCGACGAGGGCTGGCGGGCGAT 75415 29 100.0 32 ............................. GTTTACCAGCAGGTACCGCACCCCTTCGGGAC 75354 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : CCTGCGCCTGATCACGCACGCCTACCTCGGCACCCCGAACACTCACTTCCATCGCGTGGGCCGGAAGCGAGCTCGGGACCATCCCCGCATGTGCGGGGAGCACCCCGTCGACAGGCTGGCCGAGGAGCCGGGAGCGGGACCATCCCCACGTGCGCGGGGAGCACACACCGGGTAGCGGCGCGAAAGCGAGTCCCTTCCACGACGTCAACATCAGCCAAGGCCTGCCATTGATGGCTACTCACACATCGCTTCCCTGGAGACCACTCCAAGAGGCGCCCCCGCACTGGCCTTCCAGCACAGAGCTGGTCTCTTCTGATCTCGGCCGTGGCGGCGCGCCAAACAGCGCGGACTAGAGATGCCACTCGTAAGCTACTCATCGACCATAACCCGAGAACTAGGACAACCGCACGCGACGCCGAATCGGCTGCCCGAAAATGCCATCACCCAGAGAAGTGCTTCAGAACAGCCCCACTGCCCTCTAAAGCCCCAGATCAGCAAGA # Right flank : TGCTGACGCATCTTCCCGCCGTCTTGCGTGTTGCGCTCCCTGTGAGCGACGTCAACAGACTCGATATCGCTGTGGGTTTCAGCGGTGCCGGGGGCGTTGGATGCCGACGATGGCGCACACAGTTTTGGCTTCCCTGTTCATCTCCGCGATTAGCGCTGAGCGGGCCCGGATCTCTTGTTCCAGGAGGATGTTCCTTTGTTCGAGTTCGGCCGTTGAGTTTGAGGACGGTGCCGAGTTGGCGTTCGAGCGCTTCGGCTTGGGATGTTGGGTAAGAGTCTTGAGGGCGGGGTTGTCGAGCAGACGGCGGACTTGTGACTCTCCTGGTGAGCGCGAGTCCGTGGTGTGACCGCACCGCGAGCTGGTCATCAACGACTCGGCCCGGATGGACGCCCTCGTGTCCGGCCAGGTCGGCTCCATCAACCAGGTGCAGTACGCGCAGATCCCCACCATCGACGCACCGGCGACCAGGCTGAGCGGCTGCGGCTCACCTAGCGGATGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35175-34416 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFG01000005.1 Actinomadura chibensis strain JCM 14158 NODE_5_length_601486_cov_57.021026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35174 28 100.0 33 ............................ CCGCGTCGAGTGGGGTGTCCGCACCGCTAGCTC 35113 28 100.0 33 ............................ CGAGCCCCCAGGACCCCGGCCCCCAGCAGGATG 35052 28 96.4 33 ........T................... CGGATGGGGGAATTTCGGCGGCGGGTTCCAAGA 34991 28 100.0 33 ............................ CATGCGGCCCGCGCGCGTCTGGCGGGACATTCC 34930 28 100.0 33 ............................ GGCGGGAGCCCCCGCGTCGGCCGCGAGGAGGAC 34869 28 100.0 33 ............................ CGACAGCCCGACGGGGGTGAGGTCGGTGGCTAG 34808 28 100.0 33 ............................ GCACTCGACATGGTCCGCGAGCCCAGCGGTGCC 34747 28 100.0 33 ............................ CACGAAGGTCACGGCGGACACCGAGGAGGCGAA 34686 28 100.0 33 ............................ GAGCTAGGGCACCGCGTCCTGCCCGTCTTCCAC 34625 28 100.0 33 ............................ GCGAAGAATGGGCCCCACCCCGTGTGGGGCCCT 34564 28 96.4 33 ..................A......... CAGCGTGGCGGGCGGGAGGTCGGGCCCCCGGCC 34503 28 100.0 33 ............................ ACGGCTAGGGGGCGAGTTGTCTCGCAGCAACAG 34442 27 82.1 0 ............TG.......-...A.G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.1 33 GTCCGCCCCGCGCACGCGGGGATCGTCC # Left flank : GCCTGGCTCCACCGAACCAGAATCAAGAGGCGACCACAGAGCGGGTTCTTCTGCAACAGAACCCCACCCGAGCCGCGCCCTCACGAAGGTCTTGTCCAACCCGGCATGGGCGACCAGCACGTCGCCATCATCGGCCCCGAATTCGACCCGCCTGCCAACGGCACCACCACATGAGCACCGTCATTGTCCTCATCGCCGCACCACAAGGACTCCGCGGCCACCTCACCCGCTGGATGGTCGAAGTACACGCCGGCGTCTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGATCTACTCGCCACCCGCATCGGCGACGGACAAGCCATCCTCGTCGAACCAGCCACCAACGAACAAGGCTGGACCGTCCGCACCGCAGGCAAAGACCGCTGGAAACCCGTCGACTTCGACGGCCTCATCCTGTCTGCACGCCACCGAAACCAACCAAACCAAAACCCGCCCCCCACCAGATAAACCCCCAGGTTGACAAGT # Right flank : CGCGGCGGAACTGCACTCCGCTGGCGATGGCGGAACCATCCCCGCGTGCGCGGGGCCGACACCGGTACGCATCTCCGTGTCGAGCGTCTGCGCGAACCATCCCCGCGTGCGCGGGGCCGACGAGAACCCGTGAACCCGGCCGGTCCGGGGACGCGAACCATCCCCGCGGGCGCGGGGCCGACGTCGTCGGCGACGTGCCAGGCGTCGGTGACCGGGAACCATCCCCGCGGGCGCGGGGCCGACCCCCTGACGCAGACAAGGCGCTTCGGCGACGTCGAACCATCCCCGCGTGCGCGGGGCCGACTTCCATAGTGTCCCAATCGTCAACGGTGCCCGGGAACCATCCCCGCGTGCGCGGGGCCGACGGCAGCAACGCGCTCGGCGGCGAGGGCATCGGCGAACCATCCCCGCGTGCGCGGGGCCGACGGGATGCTCGGCCGCGACCACGTCGCGGGCCAGGAACCATCCCCGCGTGCGCGGGGCCGACGCCGCGAGGTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCACGCGGGGATCGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 44118-44873 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFG01000005.1 Actinomadura chibensis strain JCM 14158 NODE_5_length_601486_cov_57.021026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44118 29 93.1 32 ...........A..........C...... CCCTACGACGACGCCACCGGCGACCGCACCGG 44179 29 93.1 31 ..............T.......C...... CGATGGGGAGTGCTGGGCCCCGCCACCAGTG 44239 29 96.6 32 ..T.......................... CTGGCCTGCGCGCGTCGCAGCCGCGCGGTCCG 44300 29 100.0 32 ............................. GTCATGAGGTGGACGCCCTCCGGGGACTTCCA 44361 29 93.1 32 ..............T..A........... TCGCGACCGCAGCACAGGTCCCAGTAGCGCCC 44422 29 96.6 32 ............................G ACCTTCGGTGGCCATGCCAGCGGTCCTGAACC 44483 29 86.2 32 .....T........TT............G GGTTACCGGAACCCTTGCCGGAAGGGTTAGGC 44544 29 86.2 32 .............CT...A.........G CCTTGGTGGAGGAGGGCGAGCAACCCAGGCAC 44605 28 93.1 32 ...-..........T.............. TCCAGCCCGTTCTCGGGGTCGGGCGTCGTCCA 44665 29 93.1 32 ..............T.............T TCCTTTAGCGCGTCGCCGGTTTTGTCGATGCC 44726 27 86.2 32 .....--.......T.............T CGATTCGCGCCCGTCCGTGCCCGTTGCGTCGA 44785 28 89.7 32 ...-..........T.............T CGAGCGAGATGACTCCTCCGCAGAAATGCCCC 44845 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 92.8 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : CCACGTCACAGCCGAACAGCAAACCACCTGGCTCCTCGAACAATCAATAAAAAAAGGCTTCGAAATCCCTCCCGCCACCACCCCCCACCCACTCCCCACTGAACAAGCCCACAACCTCCGCCTGATAGAACGTCAGCGGATCAGATTCACCAAAGGCCAAGGAGAAAAGGTCGCCCTCCACCAAGCCACATTCCAGGGCCTCCTCGAAGTGACCGATGAAGCCGCCCTACGCGCAACTCTCATCTACGGCATAGGCCGCGCCCGCTCCTACGGATGCGGCCTCCTCACCCTCGCCCGCCCCACCACAGCCCCCACACCACACACCGGGTAAACCGTCAGCCCGGCTCCTGCATCACGAACACGCTTCTTCGTTGAGAGCATTCGCCGGACCCCACCCATGCATCAATGCTTCTCTCCGCGTTCCACCTGGCCGTCCTGCGCTCATCCCACGCACACGCAGCCAGTTAGGCGGAAGGCGGCGAAGCGCATAAGCGCGGAGC # Right flank : CGGCAAGAGCGTGCTCACGGACACGCTCACGTAGTCGGCCCCACGACACTTGCCGGTCGGTGACGAGAAGGCCCTGGTGCCGCCCTCCTACTACGACCCCACCTCGGCCGACACCAGTCAGCGGGCCGGCGTGGACCTGGACGCCGTCTTCCAGGTCATCGGAACTCGCCCGAAGGAGACACCGGCGATAACGGTCCTGGAGAGGACCGACCTGACCCGCGTCACGGCGCAGTCAGCCAATCTCTACCTCGCGACCTTTCAAGGGGCTCACCTGGAGTCGGCACGGTTCCAACGCGCACGCCTTTTCCAAGCGGATCTGCGGAACACCATCTCCTGCAACGCAAGTTTCTCGAATGCGGACATGCGTGAGGCTTCGATGTCGAATGCGTTCTTCGACGGCGCGGCCTTCGATGCCACCAACCTCATCAAGGCGTTCCTGCACCGGACGTCCATGAAGAGGGCTAATACTCCAGCTGTAGATCGCGATCTTGCTGGTCGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 47911-50675 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFG01000005.1 Actinomadura chibensis strain JCM 14158 NODE_5_length_601486_cov_57.021026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47911 29 96.6 32 ............................C GTGAACGTGCATTTCACCTCCTAGGCGCACGG 47972 29 96.6 32 ............................C CGCTCCGCCGTGAGCTTGGGCGGGATCCGCCA 48033 29 100.0 32 ............................. TCACGGCGCGTGATCGCCTCGACGACCTTGGC 48094 29 100.0 32 ............................. CCGTGCCGGCGGCGTTGGTCGCGTAGCCAGCG 48155 29 96.6 32 ............................T GGCGATCCCGTTCCTCGGGCATACGATCCGAT 48216 29 100.0 32 ............................. ATCTGAAGGACGTCCTCATATTCTGCCCGGCC 48277 29 100.0 32 ............................. CTGGTCTCCATGATGGGACTGATGAATGGGGA 48338 29 100.0 32 ............................. GACGAGAACGACGAGGACTGGCAGGTCAACGC 48399 29 96.6 32 ............................T CGCCTGGCCTGCTCCATCGAGCGACCCTAAGA 48460 29 96.6 33 ............................A GGTGACCATTCCCGCCTCGACCGCGCCGCGCAA 48522 29 100.0 32 ............................. GCTGACTGGTGGGACTACGCCATTGAGACCTA 48583 29 100.0 32 ............................. ACCAGGCCGACGACGACGCAGGCGATCGCGAC 48644 29 96.6 32 ............................C TTCTCGGCGAGGCGAGCCATGTCGATCGACTC 48705 29 96.6 32 ............................T CGCGTAGCAGTCGACGATGAAGCCCGTGAGCT 48766 29 100.0 32 ............................. CAGCGCCGACAGTCCACCTCCACGGACTCGGG 48827 29 100.0 32 ............................. GAGATGGACGCGCGCCGGCGCGGTCTCCGCGG 48888 29 96.6 32 ............................C CCGCAGCTCTGGTACGGCGGCTCCGCGCCCGA 48949 29 93.1 32 ........T...................C ACGTACCAGCCGTAGACGATCTCCATACGGAG 49010 29 100.0 32 ............................. CAGCAGAAGGAGTGGGCAGACAAGTACACCCC 49071 29 100.0 32 ............................. GTAGAGGCGGCGCACGTCCCGGTGTTCGTCAC 49132 29 100.0 32 ............................. ACGAACGCGGGCGGCGGCTGGGACAAGACGTT 49193 29 93.1 32 ..............T.............C CCGCTGAACACCACGCAGTCGGCGCCGGGCGC 49254 29 96.6 32 ............................C ACCCATCAGAGCATGCGGCGTCCCACGGCACG 49315 29 100.0 32 ............................. CATGTCGTCGGGGAGCTGAAGGAATGGGCGGA 49376 29 96.6 32 ............................T CGTAGGTCTTTTCCTGCTGCGATCTTCAGGAT 49437 29 96.6 32 ............................C GGTCGTCACCAGGGCCACGGTGACGATCGCTG 49498 29 96.6 32 ............................T CGGTGACCGGGCTGATCAACACCTATAATTTG 49559 29 100.0 32 ............................. CCCATCACCGCCGTCGCTGCGGCGTTGACGGC 49620 29 96.6 32 ............................T CAGTGGACGAGCCGGACACTGTGGCAGAGCCC 49681 29 100.0 32 ............................. CTGTACCGGCGTGTTCGCCTCGTTCATCGCGC 49742 29 96.6 32 ............................C GCGCGAGCGTAGGCGTCGTGCGCCAGCTTGCC 49803 29 100.0 32 ............................. CCTGGTGAGCACGTCGTAGCCTTCGGGCCGAC 49864 29 96.6 32 ............................C CGCAGATACCCGGCGCCGTCCCCCCAGAGCAG 49925 29 96.6 32 ............................C GACTACCTGGCCCGACTGCACCGGCTGCAGAC 49986 29 96.6 32 ..............T.............. AGGTCGACGCGGTCGGCGGGCACCCGGCGATG 50047 29 93.1 32 ..............T.........A.... TGGTGCTACAAGGCCGCGGGCGTGGACATCCC 50108 28 93.1 32 ........-.....T.............. GCCAAGATGATCAACCAGCCGTACGGCCAGGC 50168 29 93.1 32 ..............T.............C GGGTCTCCTTCGGCTGGTCGGGCACGGGGCGG 50229 29 96.6 32 ..............T.............. CTGACGTTCATCGCGCTGGACGAGTCCCCGCT 50290 29 100.0 32 ............................. CCGCCGCCGCAAGGATCCGGTCCAGGCTCTCC 50351 29 96.6 32 ............................T TCCGGTGAGCTGATCATTACTCTCTGCGTACC 50412 29 96.6 32 ............................C AGCCCGCGGGTGCGGTGGGTGGCCATGTGCTT 50473 29 100.0 32 ............................. GTGGCCTTCACCTGCTGCTCCTCATGCCTGCG 50534 29 82.8 23 .C.A.....C...G..............C TCGATGACCTCGGTCGCGTCGCA Deletion [50586] 50586 29 96.6 32 ..............G.............. GACGTCGTCCTGTCCCTGGGCGCGGTCACCCT 50647 29 89.7 0 ..........T...............C.A | ========== ====== ====== ====== ============================= ================================= ================== 46 29 97.1 32 GTCGGCCCCGCGCACGCGGGGATGGTTCG # Left flank : TCTTGGATGACGCCGACCTACGCGGCGCCAACCTGGTTGGTGCCGATCTGCGGGGGGCGAACCTCAACGGCGCCAAGCTGGAGGACGCCGTGACGGACAAGGGGACGCGGTGGCCTGATGGCTTTGATTACAGGGCTCGTGGCGTCAGGATCTGCGAGCAGCCCGTCGGGCTTTGCTGAGGGTCGTCCCCGACAAGATTGGAAACACTCAACTCGGCAACCGCGACCGTGTCCAGCAAATGCTGCAACAGCAGGTTCGCCCGCCCACCAGCCCTGCCCGCACTCTTACCCCACAGCACCGCCAGTGGGTTCCCCGCACTCGACGCCGACCACCCGATACTCACACAACGTAAGCTAGCCACACCCATCGACAAAACCACCCGCCCCACCAAACCCACCCCACGACAACACCACAGGCCCCAGACGCCGCCACCGGCCATGATCACAAACCAACCGAATGAAAACCGGCCCTCCCGCCGATAACGTCGCAGGTCAGAAAGC # Right flank : ACATCTTCCGCTGCTACAGGCTAAGGACAGAGGCCAGCTCATGGGCACCTAGCCGCGGGGCGCCGTGCGACCATGTCGGCTCGTTGTCTGCTCGGCGGTTTCGAAACGGACTGGCAGGGAGCGGGATGTAGCGGCACGGGGATGGTGCTGGATGCGGACAGAGCGGTACAGTCTGATACTCAGAGCGCTGCTCTGATACGAGAGCAGGCTTTTAATCCGTAGGTTGTGGGTTCGAGTCCCACGCAACCCACCCACCTTGACCAGGGCAAACACTGTCCACGGCGGCTGAGGCAGGCGCTGCCTGGGACCGCGCTGAGGCCGTCCTGGGTCCCGGTCATTCCAGGCGCATCGGACACCCGTCTAGCCCACCCCGCAGGCGACGACTCGCCTCCTCCGCCGGGCATGGCTGACCACCGCATCGGTCCTGAACTGGGCGATGCGGACACCTATTCGATTAGCCCTTCAAAGTGTCGGCGATAGGAACCGAAGGAGCCAAGGGC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //