Array 1 1489404-1490822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012395.1 Clostridium autoethanogenum DSM 10061 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1489404 30 100.0 36 .............................. AGGAACAACTGGGTGGAGTGCTGATGCTGTAGATAA 1489470 30 100.0 36 .............................. GCTATCAAGAATTTGTTCTTCAAGCTTTTTAATTTC 1489536 30 100.0 37 .............................. TTTCTTCTGCTGCTTGTACATCCCTGCGCATTGAATT 1489603 30 100.0 37 .............................. TAATGGAAGATGTAAATGAAGAATTAAGTATTCAAAC 1489670 30 100.0 36 .............................. CTAACAGAAAATAAAGCCGGATTTTAAAGGAGGGAC 1489736 30 100.0 35 .............................. AATTAAATCTTCTATTTCTTTATCTGTATTGTTTA 1489801 30 100.0 36 .............................. TTAACATAGTACCTGATGCGTATTATTTTGCAAACT 1489867 30 100.0 36 .............................. CACAATGTGCAAACGGAGGAATTGTTTCTTCTGATA 1489933 30 100.0 37 .............................. TTAAAACCCTCGGTATATTGTGCATCGCCTAAAGCTA 1490000 30 100.0 36 .............................. ACCCAATAAAATATACGTTGGTATACCTGTAGACAT 1490066 30 100.0 36 .............................. AGAAAAAGCCTGAACATATACGTATTATATTTAAAG 1490132 30 100.0 36 .............................. GGAATTAAAAAGTTATAAGATAGACGACATATCATA 1490198 30 100.0 36 .............................. TTAGTTATTCCAGTTCCGAGATTGGTATCTGTATTC 1490264 30 100.0 36 .............................. GTAATTCTCTACATATTCAAGCCCGGCGTTTATATC 1490330 30 100.0 36 .............................. TTATATGGCAAGTCTTTTGGTGTACTTGGATCTGCA 1490396 30 100.0 36 .............................. GCATCAACTTCAGGTATAATTTGAAGCTTTTGAAAT 1490462 30 100.0 36 .............................. CCAAATGCCTTTCAGGAACAGGCATAACCTTAATTT 1490528 30 100.0 35 .............................. ACAACCACTACAAAGAATACTCCTACAAAAGAAAC 1490593 30 100.0 36 .............................. GGCCATTAGTGCATTAGGCGTTGACGAGTTTTGGCA 1490659 30 100.0 36 .............................. AAGTATATTTAAACAAATTATAGAAGGATGGAGCAA 1490725 30 100.0 38 .............................. GGGAAGCTTTATATTTAAATTTAAGTCTTTAGCAGGAA 1490793 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 100.0 36 ATTTAAATACATCTCATGTTGAGGTTCAAC # Left flank : CTTATAAGCAAACTCCATCTGAACCTAAGAATCACTTGATAGTCCAATTCCGTGCTCCTCCTAATATATATTTTTAGGATTGTGCAGAGGCTATTTGTATTTGTGCAATAGCCCCTGCTATGCACACACAATCAATGTTAACACAAAAATGCTCCTTTCTTTAAGCTCTTATATATAGTATATGTATCCATTTTTACTCACTTATTATTCTTTTTTGTTCTTTTTGCAATACCAATTAGATAGCATTATATAAAAATCCTGTTCTTCTTTTATTTTTGCATTTTTAAATAATTCTTTTAAGTCCCAATACGAATATTTTAAGAATTGTTCATATAAATTATTTTGTTTATTTGTTTTCTCTATACTAATTCCTCTAACAAATAATGCTTTTATTATATTATATCCTAATACACCTCTTATATAAATAATTCTCTGGAAGTGTACATCTTATGTTAAGGTTCAATTAAAGAGACTGTTAAAAAATGCATACAGAGAAATTT # Right flank : CCACAGTAAAATAGCCATTCCTTATTTTCATTATAACCCTAAAACCCTTAATAATAAAGGCATCAACTGAAAATTTTCCAACCGTTTTTCAATTTTCATAAACTCAGCCAAAAAAGTGCCTCAATTCATTACATATCAATGCATTGAAGCACCTTCTATCTTCAAAGAGGTTGGAAAAATCAAAGTATTAAATCTTCAGTATTATTTTCATTTATCCCTAAAGTATCCTCCTCAAAACAGCTGTCATTCATAAGCTTTATTATTGTGACAAAATCCTTATCCTTTATAATCTTATTTAATTCACTCTTCAACTTTATCATTTTAGAAGTCGTTATAGCCCCTCTAAAAACAGAATTCTGATGGTGGTGGAAATATTTTTTGCATACCTTAAATACCTTATTTACCCTTTTCTCATTTACATCATAAAATACAAAAGCATAGTTGAAATTAAAATTTTTTCCCATAAAGCTCCTCCAATTATTACATCATATTTTTCAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTGAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1502802-1499998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012395.1 Clostridium autoethanogenum DSM 10061 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1502801 30 100.0 36 .............................. GCGAATAGTACCTTTGGTTTTTGCTCCTGGAGCTGC 1502735 30 100.0 36 .............................. TATTCTACAATTTGGTTTGTTTCTTTATTTATACAT 1502669 30 100.0 36 .............................. TATATGCCTGTAATTAATAAAATTACTGCTATTATT 1502603 30 100.0 36 .............................. CCAACTTGATAAGGTGTAAAACATATGTTTTCATTT 1502537 30 100.0 36 .............................. ACTTCGCTAAATTATGTTTTAACGAAGTTGTGCAAA 1502471 30 100.0 36 .............................. AAGGACAAAACGCTAGGAATTTTGAGCCTAACCAAT 1502405 30 100.0 36 .............................. AAAAAATGACTAATATAATATTATCTTATCCATTAT 1502339 30 100.0 36 .............................. CAGGTAAAATTCGATTATTCTGTAGTAGAGAATGTA 1502273 30 100.0 36 .............................. TGTTTGGAGTAATAAATTATACACAAAATAGTGGGC 1502207 30 100.0 36 .............................. TGATGTAATTATTCCTAATCCAGTATCTTTAGCACC 1502141 30 100.0 36 .............................. CCTTTTTTTAACTCTATATTTTTTATTAAGTTATCA 1502075 30 100.0 35 .............................. TTTTCTAGTAATAGAGGTTCCTTTTCTCCACCAAC 1502010 30 100.0 34 .............................. CAGTCTACTCGATACAATGGCTTAAACTGCTTAA 1501946 30 100.0 36 .............................. CAGTATAAAGCTCCAACTTTTATATGCCGAAGCTTT 1501880 30 100.0 38 .............................. GTAATAACTGTTGGAACTGCTATAAGTAGTAAGCCAAA 1501812 30 100.0 36 .............................. TAGCATCCCATACAGTTTTGAGTGTGTCTTTTATCG 1501746 30 100.0 36 .............................. TAATCATTTTGTTGCTTAGTTATACTATCTTTAAAA 1501680 30 100.0 36 .............................. CGAGCAAATTCTAACATTGCATTTAATTGTGGTCTA 1501614 30 100.0 36 .............................. GGGATTAGATCAGGATGAAATTGAACTGCTATAGAG 1501548 30 100.0 35 .............................. GACATTGCAGATGTATATTTAAAGTTTGGCCAATA 1501483 30 100.0 36 .............................. TTTATACATTCCTCCATTTTTATACTAATTATTTAA 1501417 30 100.0 36 .............................. TGGAAAGGAAGTATAATATGATAGATGAGATATTAA 1501351 30 100.0 37 .............................. CTTACTATTTTGAGTTGGGTTATCTCCTTCTTTTTCA 1501284 30 100.0 38 .............................. TTTGTAAGCAGAAAAATCCATATCTCTACCTTGTCCTA 1501216 30 100.0 36 .............................. CTTACAGGCGTATGTCCAAGATCATTTACTGCCTCC 1501150 30 100.0 36 .............................. TTTTTTTACCTTCTTAAAATTGCTGAAGCCTAGACT 1501084 30 100.0 37 .............................. CAATAATATGGAGCAAAAATAATACCAGTACCTAAAA 1501017 30 100.0 35 .............................. CTTACATAACCAGATATAGCATCTAAGAAATGTTT 1500952 30 100.0 35 .............................. TAAATAGTAGACCATCCAGTCTGATTGCACGGCAT 1500887 30 100.0 36 .............................. TAAATCGAATAAAGGATAAGAGCTTTCAATAATGAT 1500821 30 100.0 37 .............................. CTGGGAGATTATCCATTCAATAGGTTTATTTGATTTT 1500754 30 100.0 36 .............................. TTCTTGCCCAAGGGAATCCTTCTTCTTTGTATCTGC 1500688 30 100.0 37 .............................. TTCATCTACAATTTTTTCTATTTCTTCTTTTGTGACG 1500621 30 100.0 36 .............................. ATTTCATTTGCTGTTAAAAGTCTTATTTCTTCCATA 1500555 30 100.0 35 .............................. AAGTCAATGCAAATACTGATAAAGTAAACAATAAA 1500490 30 100.0 35 .............................. TGAAATATAGTAATGTAGAATTGGCGAAAATTAAA 1500425 30 100.0 37 .............................. GTGGATTTAGGATCTTTTGTGAAGTTTCTATTTATAA 1500358 30 100.0 37 .............................. AAACTTCCATCATTAGGATACATATCAAGTATTTCAA 1500291 30 100.0 34 .............................. AACTTAATTACCCTTCCAAGTGGCTCTATAGTTG 1500227 30 93.3 37 .........T......G............. TGAAAATCTTTTAAAGAAGTATATGGTCTATTTTTTA 1500160 30 90.0 37 A........T......G............. TAATAATCTCTGGCATTTTCCTCGTCTGGAGCTATAA 1500093 30 90.0 36 .......T..............GA...... AAATAATAATTGTAAATAATACATTATAAAGGAATT 1500027 30 80.0 0 A.......AT..T....A....T....... | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 98.9 36 GTTGAACCTCAACATGAGATGTATTTAAAT # Left flank : TTATTTGCTTCCAAAACACCAATTATTTGTCGTCAAGTTTATTTTATACTGAATTCATAGAGCTAAGCATGTTATCTATTTTGACAGTAGTATTGATATTCTTATTTCGAAAAAATCTTTTTTATGATAAGTCTTTTTCAACCAATTTACGAAGTAAAGGTGCTTAAAGTTATTTGAATTTAATGGCTTAGGGCACTTTTTTATTGAGTTTATGAAAATGAAGTTGAATCTTAAAGGTGCTTTTTTATTTGAAATAAAAAAATGGTTAGAGAATTTTGGTAAAAACTTATTGTGTGTTTCAAACTAAATATCATGGGTAGATTTTTTCCAACCTCTTTGAAGGTAAAGTGTGCTTAAGTGCATTGATATGTAATGGATTGAGGCATTTTTTTGGCTGAGTTTATGAAAAGTGAAAAACGGTTGGAAAATTTTCAGCGAATGCCTTTATTGTTAAGGGTTTTAGGGTTATAATGAAAATAAAGAATGGCTATTTTACTGTG # Right flank : ACTTTATTGGTATAACTTTGAATTATCGTCAAAGTGATGATAGTTGAACCGTAACAAATGTTGTATGAAACAGATTTGTTTAAATTAATTCTAAATATTTCTCAATACTTCAACTTTATTGGTTTTACTATGAATATAAATTTGATTTAAGTACAATAATATAAATGTAAACAGAATTTACTCTATAGATGATATAAACATCAGAAAATATTGGATTATGGTTATCGTCTTTTTTATCATCTGCTTAGTAAAATCAACAATATGTATAGATGCAAAGCTAACCATAAAAAGATAATCCTGTTATACTAAATTTATCTAAAAAGCTCCTCATATTTGCAGGACTTTCCATAAATTAATCGAATAATAACATATATGGAAGACAAATCTTTGTAATATACAAATGAATGGAGGGTGATTATGGAAATAAATCAAATAAACATTAAAGTATACATTCTAGAGAATATTTCTATAGAACAGGCATTGGAAGATCTAAGCAAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTCAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1506777-1504570 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012395.1 Clostridium autoethanogenum DSM 10061 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1506776 30 100.0 36 .............................. TGTGTTATACTTACGTGCTCCCATCCTTTTCCGTTA 1506710 30 100.0 36 .............................. GTGTCTAATATAATAGCACCTGTCACACTATCATAC 1506644 30 100.0 36 .............................. TTGTCTTTGTTGCTACATACACTCCAATAACAAATA 1506578 30 100.0 36 .............................. TGAAAGAGGCTGATTTAATATTTGTGGATCCGCCTT 1506512 30 100.0 36 .............................. GGAGGTATAAAATTTATGAATATTTTAGGAGTTGAT 1506446 30 100.0 35 .............................. TATATATCTATACCTTTTAACAATTTAAATACCTC 1506381 30 100.0 36 .............................. TTTCTCTTATAGATCCTTTAATTCTTCTATAGCTTC 1506315 30 100.0 35 .............................. CCTCATATTCTTTTAATAATTTATAAAATGTATTT 1506250 30 100.0 36 .............................. AATATATGTGAAATTCTTTCTCTTGTTGCTGTCAAA 1506184 30 100.0 37 .............................. AATACATCTATATGCTTAATGCATGTAGTATCTATAC 1506117 30 100.0 36 .............................. TCATCTGCTTATTAGCAATTTTATACTCCTTCTCAA 1506051 30 100.0 35 .............................. GTACCTCCTGCACACATAGCAGCAACAAAAGCCAT 1505986 30 100.0 36 .............................. TAATTTCTAATTCTATTGTATTCGCTAATAAGGCAA 1505920 30 100.0 36 .............................. GTAAAAAACAATTTATTGCACTGATCTATGGTTATG 1505854 30 100.0 36 .............................. CTCTAAAGCAAAAATGTGTTACATAGTGCGTGGAAG 1505788 30 100.0 36 .............................. ATGGTTGCACTTGGAACTTTATTTTCATTTTCTTTT 1505722 30 100.0 35 .............................. TCTTTTGATATGGCCCCTGCATGAGAAAGTTGTTG 1505657 30 100.0 36 .............................. GATGTTGTTGTTCCACTTAAATTATTTACGTATATA 1505591 30 100.0 36 .............................. TTTTTTTCTTCCATCTCACTTTTTTCTTTCTGCAGC 1505525 30 100.0 36 .............................. ATTTAACTGTAAGGTATCTTTTAAACAGCCTAATAT 1505459 30 100.0 36 .............................. AAATAAGTACAGAGATCTAGGAGAAGATATATTTCC 1505393 30 100.0 35 .............................. TTTGTTAGCCGCCTTGGTGTATCCCAAGTAACCAC 1505328 30 100.0 35 .............................. TTTTTGGGAATTACTATTTAAAATGGGTGAGCAAT 1505263 30 100.0 37 .............................. TGAGAGATATTAATAGAGATATTAATTGCTGGGATAG 1505196 30 100.0 36 .............................. TAATGCTAGTGGACTTAATTTTCTTAAGGTAATAGA 1505130 30 100.0 36 .............................. ATTCATGGAATATATTTCTTTTTATATTTAATGCCC 1505064 30 100.0 36 .............................. GCACCTAAGTAATCTATAAGTAAAGTATCAACTCTT 1504998 30 100.0 36 .............................. GAATTTATATAAACCCAATCAGAATATATATAATTA 1504932 30 100.0 37 .............................. TAAATTAATATTCAAGATAGCAGAGCCAAGTACAAAT 1504865 30 100.0 37 .............................. ACGCTATAGCTGTTAGCAAACATACTTTATAATCATC 1504798 30 100.0 36 .............................. AGAGTACGTTCCCCAAAAGTGGGGAGAGTTGATATA 1504732 30 100.0 37 .............................. CGGTGTGGCTTGATAACTATTTTGAAAATAACCACCT 1504665 30 93.3 36 .........T......G............. AGTAATTGGAATGTTAATATTTGATCATTAGCTACT 1504599 30 86.7 0 .........T.....G........C...T. | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 99.4 36 GTTGAACCTCAACATAAGATGTATTTAAAT # Left flank : TTTTTATTAGTCATGTCAAATTCATATCGCTCATAAGGCTTTTTTAAAGTAATGTTAAATTTAGTAGGAAAATTATTTTTTGTATATTCTGTAAAAGAGTTTCCATCTTCTGAAACATCAATTTTACTTAAATCGCTTCGCCACTCATATTTATTGTTGTTTGTAACTACGTCCCATACTTTTTTAATATCTGATTTAAATGTAGTTGTAATGGTCGATTCCTTCATAATACACATTCTCCCTCATAAATTTACTATTTATCTGTATATTGTACAAATAAATTATACTATTTTATACAATATATTACTACATTTTGTTGAGTATTTTCCAACTAATTTGGAGGATAGAGATGTCTTAAGTCATTTGAATTCAATGGATGAGGGTACTTTTTTTATTGAGTTTGTGAAAAGTGAAAAACGGTTGGAAAATTTTCTGTTGATGCCTTTATTATTAAGGGTTTTAGGACTATAATGAAAATAAGAAATGGCTATTTTACTGTG # Right flank : TGAAAAATTAGGAATATAGTAGACTCTATTATAACGTGAGATTGATGAAAGTCTATAGTCTTAAAACTATTGAAATTACTAAGGTTTTTCTCTGAATTTATATTAATATAACAGGAAGGGTGGTATTTTTGATAAAAAAATTGCATGGGTATCTAATAAATTTATCCATATTTAAGTTTATTTTAATTACATCAATAATACCGTTCTTTATATCATATATTGCTAGTTTAGTAATAAAAAATTATGTAAGGCAATTTCCTAATGACATTCTTAAGGTAAATAATTCATTAATAACAAATGTATCATTTACTATTAATGGCATTTTTATTGCACCATTAGTTGAAACATTTATATTTGTAATAATAATAAGTATATTTTTATATTATTCATATTCCCAAACCATACAAATAATTGCAGTAATTGTAGCTGCAATATGTTTTGGAATTCCTCACTTTTTTAACACCAATGATATGATATGGGGATTATATTGGGCAATACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTCAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //