Array 1 1057-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRG01000209.1 Rothia kristinae strain SA12 contig_209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1056 28 100.0 33 ............................ GAAGGCCCCGCCCCTCACGATGGAGGGGCGGGG 995 28 100.0 33 ............................ GCACATCGTGCAGGCGATCAACGCCCACCAGGG 934 28 100.0 33 ............................ GCGTGTGAAGGCCGCTTACCTGGCGCTGCGCGG 873 28 100.0 33 ............................ CTTCTCGGTGAGGCTGCCGAGCAGCCCCTCGAG 812 28 100.0 33 ............................ GCGCTGGCTCGACAAGCGCGGCCACGAGTACAC 751 28 100.0 33 ............................ GGTGCCGGTGAGCCCGCGGATGTCCAGGGCCTG 690 28 100.0 33 ............................ GACGGGCAGATCGTGTTCGCGGACACTGACGGC 629 28 100.0 33 ............................ GTGAGCGAGCACCTGGAGAAGACCGAACAGGAC 568 28 100.0 33 ............................ CCCAGAGGCGTTGCGTTCGAACCGCCCCATGAA 507 28 100.0 33 ............................ CAGGAGACGCGCCGGGGCCGCCGGGCGACGCTC 446 28 100.0 33 ............................ GTTGTACGTCCCGACCTTGGGGGTCTTGTTCAC 385 28 100.0 33 ............................ CTTGGCCTTGAACTTCTCGGTGAGGCTGCCGAG 324 28 100.0 33 ............................ GCTGATCACCCTCGAGACCACCATCGCCGAGCA 263 28 100.0 33 ............................ GAAGGATGTCCCCTCGAATCAGCTCAGCATGGT 202 28 100.0 33 ............................ GTACATGCGCCCGGTCTGAGAGGCCCGCGCTTG 141 28 100.0 34 ............................ CTACGGGTGCGGGATGCTCACGCTCCACGAGGAC 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCGGGGATGAGCCGAGTTGGGGCGCGGCGCACGGAGGGCGGTAAT # Right flank : CGGTGTTGTAGCGGCTTGCAAGCAAGCTGGCAAGGCCCTCCCCGCGCATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1998-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRG01000213.1 Rothia kristinae strain SA12 contig_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1997 28 100.0 34 ............................ CGGCCGACGATGCCGAGCCGGAGTCAGAGAACGT 1935 28 100.0 33 ............................ CTGGGTGTCGAGGCCGGTCGCATCGGACAGTGC 1874 28 100.0 33 ............................ GCTCATGGGATCCATTGTGCGCCTTTCTAGAGG 1813 28 100.0 33 ............................ GACCGCTCGGTCGCTCTCGGGCTCAAACTTCGA 1752 28 100.0 33 ............................ GTTTGGACGCGCTGCTGGAGCAGTGAGATGTCA 1691 28 100.0 33 ............................ CCGAGGACACCATGACCGCAATGCTCAACACTC 1630 28 100.0 33 ............................ GCGCCTCGGGGCAGCCCCTGGGAGAGCAGGTGT 1569 28 100.0 33 ............................ CACTAGCCCCTTTGCCTCCAGCTCTGCCTTGGT 1508 28 100.0 33 ............................ GGGCATCCTCCATAGGGCCTTGGTGGGTGAGCC 1447 28 100.0 33 ............................ CGAGACCGTTCGCGAGTACAAGGCCCAGGAGGA 1386 28 100.0 33 ............................ CCCGACGTGCGTGCCGTGGTTGCGGCACTTCGA 1325 28 100.0 33 ............................ CACCGGCCCCTCCTTCTCTGTGGCCCGCATGAA 1264 28 100.0 33 ............................ CGTCGGCGGAATCACCTGCACCAGGCCCTGGGC 1203 28 100.0 33 ............................ CTGGCGGAGGTGCCGGTAGTCGGCTCCGAACTG 1142 28 100.0 33 ............................ GGAAGCCGATGTGCCGTGGTGGCTCCGCGGGCA 1081 28 100.0 33 ............................ CCCGCGGAATCGTCGCGCTGTCCATCAGAACGG 1020 28 100.0 33 ............................ GTAGCCCCAAAGTAGCCCCGGCCGGGTTGGGGA 959 28 100.0 33 ............................ GGGCACCAGCTTCGGCCTCAACGAAGCCGCCAC 898 28 100.0 33 ............................ GGTCTCCACGAAACAGGAAAACGCTACCAAGGA 837 28 100.0 33 ............................ CCCATTTGAGGAATGCGTGGATCATGTCGAATG 776 28 100.0 33 ............................ CGGGGTTCTTGTCGGTCTCTGCTGAGGCGGACG 715 28 100.0 33 ............................ CTCGGCGGCCTGCAGCAAGTCAATCAGGCTGAG 654 28 100.0 33 ............................ GGAGAGTCGCATGACCCCGATGACCGACGCGGA 593 28 100.0 33 ............................ GAGGGCCCGCACTATTAGTGCGGGCCCTCTCGA 532 28 100.0 33 ............................ CCCACCCGTTGTTCTTCAGGGTCTCGATCAGCT 471 28 100.0 33 ............................ CCGTGCAAGCTTTTGGGGGTGGGAGCAAATGGG 410 28 100.0 33 ............................ GTGATGGCCGAGACCACCGGACACGCCTACACC 349 28 100.0 33 ............................ CTCAGCTGCCACCGGCGGAAGAAATCCGCCAGC 288 28 100.0 33 ............................ CCCCGCCCGCCGAGGACTTCACCCTCGCCGACA 227 28 100.0 33 ............................ GGTCCGCAGATCCGCGAGCGCATCCGTCCACGC 166 28 100.0 33 ............................ CCGACAGGCCGGCAAGAACGACATCCCCGTCGC 105 28 100.0 33 ............................ CTGGCAGAAGCTCTACGCCGATGCCCACGCAGG 44 27 85.7 0 ....................T.-.C.T. | ========== ====== ====== ====== ============================ ================================== ================== 33 28 99.6 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCGGGGATGAGCCGCATGACCGAGAAGAAGAGCGCAGCCGATGAG # Right flank : CGATCTGCAGCGGGGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 627-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRG01000090.1 Rothia kristinae strain SA12 contig_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 626 28 100.0 33 ............................ CACGTGCTCGGCTTTCAGGAGCCCGTTATCGTG 565 28 100.0 33 ............................ GGTGTGGGAGTCCATCAGCACCGGCGGCGGCTC 504 28 100.0 33 ............................ GGATCCCGCGTTCATGATCATCGTCAGCTGCCC 443 28 100.0 33 ............................ GGGGAATGATGGGTGCATAGATCGGCGCCTCGT 382 28 100.0 33 ............................ CGAGTCTCCGGCCTGCAATGCCAGTGACGTTGC 321 28 100.0 33 ............................ GGGCAGCACCTCCGGGAACAGCTCGGCAGCCGC 260 28 100.0 33 ............................ CCGGGCGCTCTCGTCCTTGTACGCAGTGAGGGT 199 28 100.0 33 ............................ CCAAGATGCGCGGCGTCGTGGGCTATCTGCTCG 138 28 100.0 33 ............................ GCGAAAAAGTGGATGGGGTGCTCGGAATCGATG 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CACGGGAGAGGACGGCGTCGAACCGGGAAGGAACTATGCCTTCGAGGACGAGGACTCCGCGTCATGATGGTCCTCGTGCTCACCGCCTGCCCAGCAGGTCTTCGCGGCGACCTGACCAAGTGGCTCTTGGAGGTTAGCCCGGGGACATTCGTCGGCAATGTCTCCACCCGGGTCCGTGAGAAGCTCTGGGACCGAACGAAGGAGCTGTGCCGAGACGGGAGAGCACTGCTGGTATATACATCGGATGGCGAGCAGCGCATGCGCTTCGAGACTCACCGACACGACTGGGAACCCGTGGATATGGAGGGCCTGACGCTGGTCAGACGGCCCTTGCCGAGCAGCCGATCCGCCGAGAAGAATCCCCGGCGTACCGGTTGGAGCCAGGCATCCGCAGCCGCCCGCAGCCGACGCCCCTCCTGGAGACGATCGCGCTGATGCGGCACTCCGTTAAACTGAATCTGAACCGGCCGACTTCCTGACGTATCCCCAAGTCAGGAAGA # Right flank : CCCATCAATGAACCATCAAGGGGAACCCCTACTGGCCCTCCCCGCGCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-1115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRG01000156.1 Rothia kristinae strain SA12 contig_156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 50 28 100.0 33 ............................ GATGGGCCGCAGGGCGTCGGTGGGGTCGAACTT 111 28 100.0 33 ............................ CGGACGAACGGCGGGCTTCCGGCAAGCGTTCCG 172 28 100.0 33 ............................ GAAGACCACCGTGTACATGCCCCTCACGCTGCA 233 28 100.0 33 ............................ CATGAGGGCGTCCTGTACAAAAGTCATGAAAAC 294 28 100.0 33 ............................ CACGCGCCGCGACCTGCGGGCCGTGTTCGGCTA 355 28 100.0 33 ............................ GCAGGCGCTGGCGCGTGTCGGGTTGCCGACCTC 416 28 100.0 33 ............................ CACCACGTGAGCGACGGCCAGAGAACCCCCTCG 477 28 100.0 33 ............................ CTGTTCCATGGACTCCCCCAGCTCGATGCGCAG 538 28 100.0 33 ............................ CCCGGCGGCGGGGGTGTCGTCGGGGAGGGTGAA 599 28 100.0 34 ............................ GCTGCCCCAGCGCAAGCTGTTCCGCCGCCGCTTC 661 28 100.0 33 ............................ GACCGTCCGCTCCGCAACTTGACGGACCCTGCC 722 28 100.0 33 ............................ GCGCAGATGCGGCTGCACTTCCCAGGACCACTC 783 28 100.0 33 ............................ GCCCTTCGTGGACGCCGCGAGGGTCAGGTACGC 844 28 100.0 33 ............................ GCAACGAGCGTCGGCGGGAAGGTCGGGGAGGAA 905 28 100.0 33 ............................ CGCGGCTGGGGATGTGCGGCTGGGGAAGAACCT 966 28 100.0 33 ............................ CGAGCGGCGGCTGAAAACGTCGAGAATGTTCAC 1027 28 100.0 33 ............................ GATCACCCGTGCGCGCGCGAGCGGCGCACGGTT 1088 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CATGCGGGGATGAGCCGACGTACCGCAACGGCGCTGGCGGCGTTGCGGAG # Right flank : CTGGCAGAAGCTCTACGCCGATGCCCACGCAGGGCCCTCCCCGCGCATGCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //