Array 1 33044-33551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAR010000004.1 Pectobacterium versatile strain NAK:227 JPLBJJGP_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33044 28 100.0 32 ............................ AACTTCCGCAGCGATGCCAACACGCTGGGCAA 33104 28 100.0 32 ............................ GACGATCGCACAATGGTGATGATGCAAAACGC 33164 28 100.0 32 ............................ GACACTCAGGTTCTCAGGCAGACTGGTGATGC 33224 28 100.0 32 ............................ TGCCGAACGTTGCCTTGAAATTGAAAAAATCA 33284 28 100.0 32 ............................ TCGTTCCAATCTCTGAGATTTACGCAGAAGAC 33344 28 100.0 32 ............................ AGGATTGGCGCTCACTATTCATGCCATTATCC 33404 28 96.4 32 .............C.............. CCTAAATCGGGATAGCGCATTGAGTACGCCGT 33464 28 92.9 32 ........T....C.............. TTTGTTCGTTCAGCGTCTAATGCCGCTATTTG 33524 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTATTACCGTTTTTAAAAACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAACCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGACCTATTGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCACGCCATATTGACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGATTCTTGGAAAACGGCAGTATTTGGCTGTACCGATCCCATCTCGTCGTTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40637-40369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAR010000004.1 Pectobacterium versatile strain NAK:227 JPLBJJGP_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40636 28 100.0 32 ............................ AGATATTGCGAATCTTGCATAAACGCGTAGGT 40576 28 100.0 32 ............................ AGATTAGTGTATTCATGCGTCAGGACTGACGG 40516 28 100.0 32 ............................ CTCTTGGTGGGCAGGAAGGCTACGCAAACTGG 40456 28 100.0 32 ............................ ATCGCAGAAAACGTGTTATCTGACATATCGCG 40396 28 85.7 0 ............GC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCAATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATTTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGTGGCGAAAACGGCAATTGCCGCTAATAAAACAAATCGTTAGAGTGAGCGGGCAACG # Right flank : ATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGACACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTAATTGAAGTACGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 49207-49593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAR010000004.1 Pectobacterium versatile strain NAK:227 JPLBJJGP_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49207 28 100.0 32 ............................ ACATACGAGAAAGATGCTGGATTGTTGCCCAC 49267 28 96.4 32 ...........C................ CAAAATCAAGCAACAAGGCCACTACAGTTAGC 49327 28 96.4 32 ........T................... ATAGGCCAGCAGTTACAACCCCTTCTCGAATC 49387 28 96.4 32 ............G............... ATTAGATAATTTCCTCATCAAACAGCAATTCA 49447 28 96.4 32 ...........C................ ACTCCGGCACTTCGATCTCTGTCGTGCGAAAC 49507 28 89.3 32 ...........C.C...T.......... AAGTGACGCGCACAGCGCGTATACGGTCAGAG 49567 27 82.1 0 .C...........C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 7 28 93.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGGATTCCCGACGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGCCAGATGTTTTTCGTGTTTGTGAAACATGGCCCGCTACAGGACATCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTAGTTAGTGTAAAAATTTAACG # Right flank : GCTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGACTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGAGCGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGGGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCCCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 846811-845380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAR010000005.1 Pectobacterium versatile strain NAK:227 JPLBJJGP_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 846810 29 100.0 32 ............................. AAACTCGTACCAGTGTTTTAGTTGAGCGTATT 846749 29 100.0 32 ............................. GTGGGCGATAATGGGTAATGTATTTGATTTCG 846688 29 100.0 32 ............................. AGCTGGAAAATCCAGGTTGGGTTTGTTGGTTA 846627 29 100.0 32 ............................. AATAGGGTGTGAGCGATAACGGGGTAATTCAG 846566 29 100.0 32 ............................. CATTCAACAACAATCTTTACGAGAAAAACGGC 846505 29 100.0 32 ............................. TAATGCATAATCCCTGCCCGACTCAGCGCCAA 846444 29 100.0 32 ............................. GAAAGTATATCAATGTTGCAATCATCCATATT 846383 29 100.0 32 ............................. GATGGGGAAATTACTTGGTTCACGCAATGTGT 846322 29 96.6 32 .............C............... TTCCGGCCTACGGGCATCAATACTGCTATAAC 846261 29 96.6 32 .............C............... GGTGACTGGTTCTGGTGCCATCTGACGCCACA 846200 29 96.6 31 .............C............... CCGGTTAATCCGGCTTTTTTATGCCCGTAGC 846140 29 96.6 32 .............G............... TTATCGTGATCAATGGCGGCGCTAACGTTGCA 846079 29 89.7 32 ..........T..C..T............ GATGAATTTGCCAACATCAAAGGGATTACTGC 846018 29 93.1 32 .............C..............A TCTCGTTCATGTCGTAATGCGTGTAAACGGCA 845957 29 96.6 32 .............C............... GTGGAAATCAATAACGCAAAGATTAAAAATCT 845896 29 96.6 32 .............C............... AAATGAAATTTTTCTGGGTATGGGAGCAAAAA 845835 29 96.6 32 .............C............... TAGCTAGGGGCTACAGGGTCAGGTTGTTTTTG 845774 29 96.6 32 .............C............... TTCGTCAGCGTCCTGCTGTGAGTTAAAGATAA 845713 29 96.6 32 .............C............... TGCCCCCACTCATTTCCTAATAACGCTGGAAT 845652 29 100.0 32 ............................. CTCGCTGGAACCAACGACTCCCTGCTGATTAA 845591 29 100.0 32 ............................. GCAGAAATTGCCGTCATTAGCACGGTTACTAT 845530 29 96.6 32 .............C............... GTTTCGTCAGCATCAACGGTCGCTGGAATTTG 845469 29 93.1 32 .A...........C............... CGCTGGCGCAACGAGTCGTACCGATACGCCAG 845408 29 89.7 0 A.A........................T. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 97.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAGTATTTTTAACGGGGAAGATTTTTACCGAGAAATAGAAATAAAAACGCAGTGGTATAACTCTTGCCGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACCGGCAGATCAGGGAAACGTGGTGATAGCGTGGGTGAAAAACACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATAGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAATGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGCTTATACCCCTGTTGCATGTTGGTCTAAATACCCCCTGCACGGGGTCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCTTGTCAGTATTAAAGCACGCCATTTTTTGCGCTTACCGTAATGGTGGCGTGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 852713-849021 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAR010000005.1 Pectobacterium versatile strain NAK:227 JPLBJJGP_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 852712 29 100.0 32 ............................. TTGACTTCCCTGCTCCATTTCTACCTGCGATA 852651 29 100.0 32 ............................. CTATGGCTGAGTTCAAAATTGAGTCAATGGCT 852590 29 100.0 32 ............................. CTGGATTGCGGGTTAACTTGATTTCGGCGGTG 852529 29 100.0 32 ............................. TGGTTAATCAGGTATTCCATTGCGTCGGTGTA 852468 29 100.0 32 ............................. CATTGCATTTTATCAGCCGCAGCGAATCGTCG 852407 29 100.0 32 ............................. TAGCGTTGTTTAACGCTGGGTATCGTAAATCT 852346 29 100.0 32 ............................. AGGATCCACATGGAGGATTGCGAGAGCAACGG 852285 29 100.0 32 ............................. CGTTCGCAGCAATGCGGCGACTTGCGTAGACA 852224 29 100.0 32 ............................. ATTAGGGTTATCTGAAAGCACGGCTAGCCTAA 852163 29 100.0 33 ............................. CGATTTACCGTCGCGGTTATTGATTGCGGATAA 852101 29 100.0 32 ............................. CCGGTATTCAAGCTGGTGACCAAGATTTTCTC 852040 29 100.0 32 ............................. TGCACGCGAATGCACGGTTTGATTTACTACAG 851979 29 100.0 32 ............................. CATGTCTGAGCGAGAGCATTTCGCTTCTATCA 851918 29 100.0 32 ............................. CAAAAACTGTCATGCGATGAGGTCTGGCAATG 851857 29 100.0 32 ............................. TTATTAATCGGTTCACTTAACGGCGAAATGTC 851796 29 100.0 32 ............................. CATGTACGCCAGAAACGGATTATCTACGGCGG 851735 29 100.0 32 ............................. AGAAGCCCATCAGATCGAAACGACCGCCATCA 851674 29 100.0 32 ............................. GATATCAGAGGCTAACGATGAGCAGGCAGCTT 851613 29 100.0 32 ............................. ATTGGTTCTTATTTTGTTTGCCCCCGCCAGTG 851552 29 100.0 32 ............................. ATGATTATCGGATTCATTCTTCTCGTCAGTGC 851491 29 100.0 33 ............................. TCATAGAATATTCGTCGGCAACCATGTTGGCCC 851429 29 100.0 32 ............................. CACGTACATGCGGCCCACAGGCGTAGTTCCTT 851368 29 100.0 32 ............................. CGTTGGGGGAGATATCCGAATGGGCAGGTTGT 851307 29 100.0 32 ............................. CGTGCACATCGCCAGTCAGTCATCGACATTAT 851246 29 100.0 32 ............................. TGACATGTCACGCCGTTATTGCGGTGATGGAC 851185 29 100.0 30 ............................. TCAGGCTATGCAGTCACTCGGCAATACCAC 851126 29 100.0 32 ............................. CCATTAGGCCCCCTCAATGCGCTTAAAGGTGA 851065 29 100.0 32 ............................. ATTAATAATTTCGGATTTAACAAACTGTAGGT 851004 29 100.0 32 ............................. CGGACCTGCTCATTGCTGACGTGCTGGTTAAG 850943 29 100.0 32 ............................. GCTATGCATTTTCACCTCTGTTTTATGCACGA 850882 29 100.0 32 ............................. GTAACCACCATGGCAGGAAATTCATATTTACA 850821 29 100.0 32 ............................. GACGGTGACGCTGTGTCGCGTGAATTAATGGC 850760 29 100.0 32 ............................. TATTGCCATTTCATTTGATTTTATGATTTCTT 850699 29 100.0 32 ............................. GCTGGCTGGAATTGCCAAACGGCCAGCGTGTA 850638 29 100.0 32 ............................. CTAATGGCGCAGCAAAATAAGCACGCCGAAAA 850577 29 100.0 32 ............................. TCGCCAGCGCAATGGCGACGCATAACAAGTTC 850516 29 100.0 32 ............................. GGCGATAGCAGCCAATACAGCACCGCGTAAAA 850455 29 100.0 32 ............................. GATTCAGGAGGAACGGGACGCGCAGCGAAAGT 850394 29 100.0 32 ............................. AGCAGGGTGCGGGTGCGTTACTGGCGTTCGTC 850333 29 100.0 32 ............................. ATAGACACATCCACGCCTATTGGCAGCAAGAT 850272 29 100.0 32 ............................. GTGTTGTTCGTCTGACTAAAGACGGGCAGCGA 850211 29 100.0 32 ............................. CTCAGCGCAGGGAGCGAAAACGGCGCAAGCGC 850150 29 100.0 33 ............................. CAAAGTCACAGCGTGACGACTTAAAACGCCGCA 850088 29 100.0 33 ............................. AGCAGGGTGCGGGTGCGTTACTGGCGTTCGCCG 850026 29 100.0 32 ............................. GTAATCAAGCTTGCGTTCCAGACAGTATTTGC 849965 29 100.0 32 ............................. GTCGCATGGGTAGTGAGCGTCGTGACTGCCTG 849904 29 100.0 32 ............................. AACAGCGCATTAGAAAGTGCTAATACTCGTCT 849843 29 100.0 32 ............................. TGCGGCACGAATGGCCTCCGTTGATTGTTCGT 849782 29 100.0 32 ............................. CATTGTTCGAGACTCTAAACCTAATCTTTTTA 849721 29 100.0 33 ............................. CGAAACCGGACTCATCTGGCAATTTGAAGATGT 849659 29 100.0 32 ............................. TTCAGCACATCGTCATCAGCGTTATTGGTGAC 849598 29 100.0 32 ............................. CCAACTTTTTGTGGCTCAGTGAGAGTGACCTT 849537 29 100.0 32 ............................. TAACCAGAGTCATTAGGCCGCTGCCTAGGCTC 849476 29 93.1 32 .....T.............A......... GAATTACGCGCTCAGGGGACTACGCCAGACGC 849415 29 96.6 32 .A........................... TAATGACCGGGTTTCGGATTGCCGGGGGTGTC 849354 29 96.6 32 ............T................ AACCTGTCATAGCACGCAAGGCGCTTTGTCCC 849293 29 96.6 32 ..........T.................. ATGCGTATTGCTGTGGCAAACGGTATTACGCT 849232 29 86.2 32 .........A..TG..T............ GACACCGGGCAAATAGAGCAGAACTGTGATGT 849171 29 89.7 32 A.......T.......A............ AAGTCGTTACGATTGCCGCCCCATGTTCCCGT 849110 29 100.0 32 ............................. TTTTCAGTCAAAGCGCGTGATGTATATATCGA 849049 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 61 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTTGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //