Array 1 1149537-1150703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077074.1 Pseudomonas sessilinigenes strain CMR12a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1149537 28 100.0 32 ............................ TCGCCCGGCGCGAGCGCCTGCAGACGAAAGCG 1149597 28 100.0 32 ............................ CGCTGAAAAACCGGTGCAGTACGAGCTAAAGG 1149657 28 100.0 32 ............................ ACGACGTCACTGTTATGTCGGGCCTCCACCAT 1149717 28 100.0 32 ............................ TGCAACGCGGCAGCGCCACCCTAAGCTACACC 1149777 28 100.0 32 ............................ ATCATGGTGTTGAGGGTTGTCAGCGTCTCACT 1149837 28 100.0 32 ............................ TTCAACTGAATGCCCAGGCGCGTCGCCGCGTC 1149897 28 100.0 32 ............................ TACGAAAAGGGCGCGGCGGCAGCCTGGCGCAA 1149957 28 100.0 32 ............................ TGTGACACGGCTGAGGTGCCGAGCGAAATCTG 1150017 28 96.4 32 .G.......................... AAACGGCAGGTTCGCACCATGCATACCACTTC 1150077 28 96.4 32 .G.......................... TCGACAATGTCCGTACGCTTGGCCTGGACGTA 1150137 28 96.4 32 .G.......................... CTGGTGTAGGACCATCTGTTCGGCCCGCTCCC 1150197 28 100.0 32 ............................ CAGGACGGGCGACACCAGGCGCAGGGCAGCCC 1150257 28 96.4 32 ..........A................. AAGACGAATGCAGTCGCGCACAGCTGCGGCTC 1150317 28 100.0 32 ............................ ACGTAGCACTGGTAGAGCGTGGCCGCTGTGGC 1150377 28 100.0 32 ............................ ATGCACCGCGTGCCTGCCCTGCACTGGAAAAC 1150437 28 96.4 32 ...........T................ TCTACGACGAACCCCGGCCAGATTTGGACGAT 1150497 28 100.0 32 ............................ AGGTCACTGTCACACCTGGTACGGCGTTGCCG 1150557 28 100.0 32 ............................ ACCGAAAACGAACTTGACGCAACGATCACGCT 1150617 28 100.0 32 ............................ CAGGCCGCCAAAGCCGCGACGCTTCTGGGATG 1150677 27 92.9 0 ......................-.C... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.7 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : GGAGGTGTCCGATGAGATCACCGAGCAGGCCAGCGGCGTCGAGCGTGGGTTGATCTGGTCCCTGGTGCATTCGGTGGAGATGGCTCGCGGCGTGGTGGATGCCTTGCTCGATGGCCATCGTCTTTCCCCTGACTGAATACGCACTACCTGTGGCGAGGGAGCTTGCTCCCGCTGGGGCGCATAGCGACCCTAAACCTGATAGAGGCGGTCGCCTCGATTGTTCGGGTGGAATTCAGCATCCTCGCCACGGCCACAAACCGTGTCAGGCATAGGCCTAGCGCTAAATTGCCGCTTATCGTTGTTGGAAAAGAACCACTAACCTACTGATGCCAAGACGACTAGAGCGCTATAACTACCCACATGGTGCCGACCCTCTTTTTGAGGTGGTGGGGTACGCCTTGTAAAATCAATAAGTTACAAGCACCCACAAAAAGAGGGTTAAACACGCTGTAGAGTCGTATCTTTCTTTAAAATCTTGGGGTTAGAGTAGAAGTGCTCTA # Right flank : AGCCCTCAACGGGAATCTAGCCCCAGACACCAGATCAGAGAGGCAATTGCCCCTACACCTCAGTTGCACGTCACTGGAACGCACGCATGAAACACTCCCTCCTCTTGTCCTTCTGAGGCTATGCCTGGCTCCGAACTAGTCATGTGATAAATCTGAACTTCCAGTACGACATAGACGAACATCCGGACATTGCTTATAACCCTTACCGCCCAATGGACGACACAGCAGGCGGTTCTCTCTCATGGAAGACATCCGGTCCGCAGATCTAAAAACGATTCTTCATTCCAAGCGCGCCAATATCTATTACCTGCAGCACTGTCGGGTACTGGTTAATGGTGGCCGGGTCGAATATGTAACCGATGCCGGCAAACAGTCGTTGTACTGGAATATCCCGATCGCCAATACCACGACCGTGCTACTGGGTACTGGCACGTCAGTTACTCAGGCAGCCATGCGCGAACTGGCCAAGGCGGGCGTGCTGGTGGGGTTTTGCGGGGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1159515-1160557 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077074.1 Pseudomonas sessilinigenes strain CMR12a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1159515 28 100.0 32 ............................ ATGTCGACCTCTTTCAGCATGCCGCGAAGGGT 1159575 28 100.0 32 ............................ ACTTGTGGCCGTAGAGAATCGCGTCCATGACG 1159635 28 100.0 32 ............................ AAAGAGAGGCCTGTTTACGACGCTGGGCGGCG 1159695 28 100.0 32 ............................ TGCCCGGTTCCGCTCCAACTGGGTATCAATCT 1159755 28 100.0 32 ............................ TGGCCGAACGCCGCGAGACGTCCGCCCAGCTT 1159815 28 100.0 32 ............................ AGCGTCAAAAGCTGAATCAGGGAAGTACTACA 1159875 28 100.0 32 ............................ AAACAAGGCGACTACCTGACCGAGTTCAAGGC 1159935 28 100.0 32 ............................ AACAGCGCCTCTGGAGACGCCATCGGCTGCCG 1159995 28 100.0 32 ............................ AAGATGATCAGCGTTGGCATGAAGGTGATGCG 1160055 28 100.0 32 ............................ ACCCAGCGCAGCCAGGGCTGATTGGCCTCCTT 1160115 28 100.0 32 ............................ GGGAAGATCGCACCATAGCTGGAGGACACGCC 1160175 28 100.0 32 ............................ GGCTACAGCCAGGCCGTGTCGGCGGCAGGGCA 1160235 28 100.0 32 ............................ CCCAGGGAATGCTGATCCTGGTGCATCCAGCG 1160295 28 100.0 32 ............................ AGGAAATGTCCCATGGCGAGCTGATGGACAAA 1160355 28 100.0 32 ............................ ACGAACGGCACATTCTCCAGCTCGGACGCAGC 1160415 28 92.9 31 ...........C.C.............. CCAGGCCTTCAGCGTTCATCGGTGCTGTTCA 1160474 28 71.4 27 TC...T.....A.C......G...A.C. CAATCCATCATCAATCCATCGGCACCC G [1160476] 1160530 27 85.7 0 ...-.........G........G...G. | T [1160551] ========== ====== ====== ====== ============================ ================================ ================== 18 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCCCTGGACCAGTTGCTGGCCATCGATTGGCTGACCGGCATGCGTGACCATGTACAGATCGGCCAGCCCTGCTCGGTGCCGACGCCGGTGCAGCATCGCCATGTCAGCCGGGTACAGGTCGACAGCAGCCCGGCACGCCTGCGTCGCCGCCTGATCAAGCGTCATGGGCTGACCGAGGACCAAGCCCGCCAGCGCCTGCCCGACAGCGCGGCGAAACGTTGCGACCTGCCGTTCGCGGTGATGCGCAGCCATACCAGCCATCAGCTGTTCAACCTGTTCATCCGCCACGGCCCGTTGCTTGAACAACCACAGCCCGGCACGTTCAACGGCTATGGCCTGAGCTCCAGTGCGACAGTGCCCTGGTTCTGACCCTTTTTTCCGGGTGCAGTGGAGCGCTTTGTAAAATCAATGACTTACAAGGCGCTTCAAAAAAAGGGTGTACAGCAACTTTTAACGGCCTTTCTTTTGAGATTCAGGAGGTTATAGAGAAAGTGCTCTA # Right flank : ACTTGATGCACTCGTCGCTGGCTGGCCTGGGACTCCCGGGCCAGGACGCGGCTTTGTCACATCCCCTTCATCGGCGCTGGCTAAGGTGGCCTCTTTTGACCATGTCAGGGAGTCACCATGAGCGAGTTCAACCTCGGCCGTCGACGGATCATGCAAATCGCCGGGGCGGGGATGTTGATGCCCAGCCTGGCGCCGGCGGTGATCGCCTCGGTCAAGGATCGGCCCAAGCTCACCGATGGCGTGCAGTCCGGGGACTTGCAGGGCGATCGGGCGATTATCTGGAGCCGCAGCGACCGCCCGGCGCGGATGGTGGTGGAGTGGGACACCCGCAGCATGTTCACCAACCCGCGACGCCTGGTCTCGCCGCTGGCCGATGCCCGCACCGACTTCACCGCCCGGGTGGACCTGAGCGGGTTGCCGCTCAACCAGGCGATCTTCTATCGGGTGACCTTCGAGGACGCCCGCACCGGGGTGGCCAGCGAACCCTGGTTCGGCCATTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //