Array 1 1253024-1254517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCO010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 15-SA01028 unitig_0-quiver, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1253024 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 1253086 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 1253147 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 1253208 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 1253269 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 1253330 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 1253391 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 1253452 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 1253513 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 1253574 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 1253635 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 1253696 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 1253757 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 1253818 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 1253879 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 1253940 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 1254001 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 1254062 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 1254124 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 1254185 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 1254246 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 1254307 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 1254368 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 1254429 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 1254490 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1270800-1272453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCO010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 15-SA01028 unitig_0-quiver, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1270800 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 1270861 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 1270922 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1270983 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1271045 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1271106 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1271167 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1271228 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1271289 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1271350 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1271411 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1271472 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 1271533 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 1271594 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 1271655 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1271716 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 1271774 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 1271835 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 1271896 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 1271957 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 1272018 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 1272079 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 1272140 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 1272201 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 1272302 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 1272363 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1272424 29 93.1 0 A...........T................ | A [1272450] ========== ====== ====== ====== ============================= ======================================================================== ================== 27 29 98.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //