Array 1 665542-666562 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP066709.1 Staphylococcus pseudintermedius strain HSP118 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    665542	    36	 100.0	    30	....................................	GGTTAAAATAGTTTTTTGAAGATTGAAAAT	
    665608	    36	 100.0	    29	....................................	CAATCAAGTGCAGATTTATCAAAAAAGTT 	
    665673	    36	 100.0	    29	....................................	ATTAATGGAAGCTGTTAAAGCTAGGATAC 	
    665738	    36	 100.0	    29	....................................	TCATTGTAAAAGAATCCTTGACGATAGCC 	
    665803	    36	 100.0	    30	....................................	ATCTTCACTTGTCATAACGTAAAGGTTTAC	
    665869	    36	 100.0	    30	....................................	TTGATATCAGAAATCAGAACATTCAAAAAA	
    665935	    36	 100.0	    30	....................................	AAAAATGCTTGGTCTTTACTGATTGAAGTT	
    666001	    36	 100.0	    29	....................................	AACTGTCAATAATACCCCCTACAAGATGT 	
    666066	    36	 100.0	    29	....................................	TGTACATTTAAACGATTTATTCGGTCAAG 	
    666131	    36	 100.0	    29	....................................	TTGTGAAGGAAAAATCGACTTCACGTTGG 	
    666196	    36	 100.0	    30	....................................	ACCGTTCCATAGCTACATGTCCGCTAATTG	
    666262	    36	 100.0	    30	....................................	CGTTAAGATTTGTTCAAAATCTTTTATTGC	
    666328	    36	 100.0	    30	....................................	AAATAGATGAGGAAACTTTTAATAGTATCA	
    666394	    36	 100.0	    30	....................................	GTAAACACTGTTTATCATGTTGAAGTGGCC	
    666460	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    666526	    35	  86.1	     0	.........T................-.CA.C....	|                             	TC [666559]
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.0	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTTTTTCCGGAGTCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCCGAAAACATTGTCATTCGCTGA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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