Array 1 2117-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALZG01000013.1 Streptococcus mutans B114SM-A contig_265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 2116 28 100.0 33 ............................ CAGCACAAAGACACGAGTGCATTGGCGCGCATG 2055 28 100.0 33 ............................ TGTTGTGGTGCCCGCTGTGTGCATATGCGTCAA 1994 28 100.0 33 ............................ TCTGGCAAGTGAAGCTTTTGATTGTGCTTCCTC 1933 28 100.0 33 ............................ TTGAGTCTGCTGTAAATTCGCTTAAAGACGAAA 1872 28 100.0 33 ............................ CGCAATTATTGGCAAAATTGCTAGCGACGTTAA 1811 28 100.0 33 ............................ CGCACTGTAGAAGTGTTGTTTGCAATATCTTGC 1750 28 100.0 33 ............................ TGCCGTATTGGCGTTTATGGACGTAATCGCAAG 1689 28 100.0 33 ............................ TGACTTGTGTTAAAAAGTTATCGCTTAGAGTAG 1628 28 100.0 33 ............................ TAAGTCAACTACGTTTACAAACGCTGCTGTTTT 1567 28 100.0 33 ............................ TTCTGCTTGCGGTGTAGTCAAGCCACTAACTGC 1506 28 100.0 33 ............................ TATGTCAATACTTTTTTTGATATTTTTTTAAAA 1445 28 100.0 33 ............................ TGCTAGACGAAGCGGTGAAACAAACACAACCGC 1384 28 100.0 33 ............................ TACTGTATATTACGCTTGCAGACCATTCACTGG 1323 28 100.0 34 ............................ CCAAGTCGCCTGCGCGAGGTGGCTTGTTTGCTGG 1261 28 100.0 33 ............................ TGTTCCAGATGGAATTTACAATCGTATCTGGCG 1200 28 100.0 33 ............................ AAACCTCCTTTTTTTAAAATCCACTGCCAGAAA 1139 28 100.0 33 ............................ TAGAACCCTGTTGCTCCCAGGGAATGAAGCTGA 1078 28 100.0 33 ............................ CTGCCGATTTCTGCGCTGTTTAATAGCCACTTG 1017 28 100.0 33 ............................ CTAGAATATCATTTAAATGCAAATTAAGGGGTC 956 28 100.0 33 ............................ TGATATTGGCGCAACAGTAACCACTCCAGCAGG 895 28 100.0 34 ............................ CAAACTCTTAGATAACACAAATACATGTATAGCA 833 28 100.0 33 ............................ TTGTTCTTTGTCTACAGTGTCTCTGAAGTATAC 772 28 100.0 33 ............................ TGCAGTATGTTACTCTGTGGGACTTCACGAACC 711 28 100.0 33 ............................ CGCAAATTAAGGGGCCTCTCATGCATTTTTAGC 650 28 100.0 33 ............................ TACACAATAGGTCATGCAGATGATGGCACTAAG 589 28 100.0 33 ............................ TCACTGGTTGCAACTTGACTAGTTGCGCTGGTA 528 28 100.0 33 ............................ TATAATCAGAAAGATAAAGAAAGGAGAAAATGG 467 28 100.0 33 ............................ CGACGGAACAGCAAGCGCGAGATTTAGTGACGA 406 28 100.0 33 ............................ TGATAAATACAATGTCCTTTGTAACTCAATGTT 345 28 100.0 33 ............................ TAGCAATCGTGACGGTCGGATAGATTTAGGCAA 284 28 100.0 45 ............................ TGGGAGCTGTTAAGTTGCTGTTTTCGGACCAAAACGGAAAGTTAC 211 28 100.0 33 ............................ CATATTGTTAATAATATTTCAGTTGCTGGTAAC 150 28 100.0 33 ............................ TGCTTAATGATGGCAATGACAGCCCTGAAACAG 89 28 100.0 33 ............................ TTCCACGACCTGTAGAGTTCTTCATACTCTTCC 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================= ================== 35 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-406 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALZG01000012.1 Streptococcus mutans B114SM-A contig_264, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 1 28 100.0 45 ............................ TGGGAGCTGTTAAGTTGCTGTTTTCGGACCAAAACGGAAAGTTAC 74 28 100.0 33 ............................ CATATTGTTAATAATATTTCAGTTGCTGGTAAC 135 28 100.0 33 ............................ TGCTTAATGATGGCAATGACAGCCCTGAAACAG 196 28 100.0 33 ............................ TTCCACGACCTGTAGAGTTCTTCATACTCTTCC 257 28 100.0 33 ............................ CGCTTTGTTTTTTGTGTACAATACAGTTAGAGC 318 28 96.4 33 T........................... TACTGCACCGTTTAGTGCTAGTGGAACACTTAA 379 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================= ================== 7 28 99.5 35 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : | # Right flank : CCAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //