Array 1 17604-18707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAS010000034.1 [Clostridium] symbiosum strain D40t1_170626_G9 NODE_34_length_44546_cov_26.3474, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 17604 33 100.0 35 ................................. AACAAAGCTGTTCTGAATCGTATAATCAAAATACC 17672 33 100.0 34 ................................. CAAACCCTGTTGGCGCATATGCCATATTGTTATT 17739 33 100.0 34 ................................. ACCCCCCTTACACTTCGTTTGGTAAATCATACCT 17806 33 100.0 33 ................................. AAAATTCTAATTCACTACATTCTCAACGGCTTC 17872 33 100.0 35 ................................. CCCCCTACACTTCGTTTGGCAAATCGTATCTACCC 17940 33 100.0 33 ................................. AAGTGAATAATGTGGATGCGGTGGAATTGATTG 18006 33 100.0 34 ................................. ACCCACCGTGTTTAAAAAAGATGAAATATATGAA 18073 33 100.0 35 ................................. TTCTTGATAAAAACGTTACTATAATGCCTGATGGA 18141 33 100.0 34 ................................. CATATATTTTTTGTAATATTCAGCCCCTTCAGCA 18208 33 100.0 34 ................................. ATTGACGCAATTGCAAAAGGCAAGGTGGAGAAGA 18275 33 100.0 33 ................................. GCGAACACACGCCCTTTATGATCGTACTGCATG 18341 33 100.0 33 ................................. CAATCGGGTAATCCATATCCCAGGATACGGGAG 18407 33 100.0 34 ................................. TGGTTCTACCAATGCATGGAATATTTGCACTTCC 18474 33 100.0 34 ................................. CACGATTCGAATGGAATCTTTATACTGATAAAGC 18541 33 100.0 34 ................................. GCTGGTGTCTGCACCCCCAGTTGACCGGATACCC 18608 33 100.0 34 ................................. TGGTTTTTATTTGAACAGCACCAGCATGAAACGC 18675 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 17 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : CAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATTGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTACAAAGAGGGTTGATTTTTAGTAAGGAAACTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TTCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATTAATAAATTTAGAGAGGAAAGAGATTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19455-21494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAS010000034.1 [Clostridium] symbiosum strain D40t1_170626_G9 NODE_34_length_44546_cov_26.3474, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 19455 31 100.0 37 ............................... GTTTACACTTTTGTGGCATTCCAGCACACTTGATATC 19523 31 100.0 36 ............................... GTACTTCCAACTAGTGAGTTTGAATAAATATCACCT 19590 31 100.0 36 ............................... GTCCTACGGTCGCGCTCCGCTGGCCGCTGGCGCGGC 19657 31 100.0 36 ............................... GTCGTTCCATATCTGTGTTTTTAGCATCTGTAACTT 19724 31 100.0 35 ............................... GTCCCATACTACGACAATCTCCCTCGGGTCGAAAG 19790 31 100.0 34 ............................... GTGACAGTTTCCGGTGCTTTGTGCCGTAAAAGAT 19855 31 100.0 35 ............................... GAGTAACCAGTTCAATCCCCATAACAACGTATCCC 19921 31 100.0 34 ............................... GTTTCCGTCCTTTTCCAACGATGTTCACCCTCCG 19986 31 100.0 36 ............................... GGGTCCAGCGGTCCCCACTGCTGTATTTCTTCCACA 20053 31 100.0 35 ............................... GGTTTCATTTTCAATTCTTCCTGTTTTAACTGGTC 20119 31 100.0 39 ............................... GGATTTGTCCGGTGTCCGCCGCTGTCAATGCATGTACAG 20189 31 100.0 36 ............................... GGTTTGTAAAAATCAAATAGCAGCTTGATTTCCACC 20256 31 100.0 35 ............................... GGCTTTAAATCTTCATTTGTTTTTCTGAGAGAGGC 20322 31 100.0 38 ............................... GGTTTTTTATATCTTTACACATGATATCTCAGCGCGCC 20391 31 100.0 36 ............................... GGATCTTCCCCAGTGTTTCCATGTAACTAATTTCGT 20458 31 100.0 36 ............................... GGATGGTCATCGGTTGTGACCGTTATCTTCAATCGG 20525 31 100.0 36 ............................... GGTTACCAAACAGCCCATTATATCAATGTGATTACC 20592 31 100.0 36 ............................... GGAACCGCTTTTTTATAAGCAGAAGAGGGGCTTGCC 20659 31 100.0 36 ............................... GGTCATGGAAACACAATCCGAAACGCCGGACAGTGG 20726 31 100.0 36 ............................... GGAAAGGACGGTCGGCCGAACCGTCCCTGTATGCAC 20793 31 100.0 38 ............................... GGCACCTAAACTACTAGCATAATCAATACACCCCTGAA 20862 31 100.0 35 ............................... GGCATTTCACCGTGTATAATTTCATGTAAAAGAAC 20928 31 100.0 36 ............................... GGCTTCACCGTGTACAGCGGTTTGTATGGCTCTACC 20995 31 100.0 37 ............................... GGCCGTATTTTGGGCTACGGCCTGCCAGATTGGAGCA 21063 31 100.0 36 ............................... GGTTAATCTGGATGCAGTTCCCGCTGGCCGGTACCA 21130 31 100.0 35 ............................... ATTATTGTGATACCGGGGCGGAATATAGCGTCAAT 21196 31 100.0 37 ............................... ATCCATCCGAATCGCTGGTCTGGCTGACCGGTAACAA 21264 31 100.0 36 ............................... ATATTACTGTTTGGGTTAAGTTCTCCGCCTCTTCTC 21331 31 100.0 36 ............................... ATTCCCCAATCACAGGCACAATCTTCACCGTCTGTT 21398 31 93.5 35 ...A.......................T... ATGTCGTCGGCCGTTCCCGGAAGGCCGTCAGCTCT 21464 31 90.3 0 ..........T................TT.. | ========== ====== ====== ====== =============================== ======================================= ================== 31 31 99.5 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : AGTTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAAAGCAGAACATATATTTCCTAATAATAATATAACTAACACACAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATTATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAGTCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACCCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10497-19971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAS010000063.1 [Clostridium] symbiosum strain D40t1_170626_G9 NODE_63_length_29028_cov_22.7067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 10497 32 100.0 34 ................................ CATTTCCAAATATTGCAATATTTCCATTTCCAGA 10563 32 100.0 34 ................................ ATGGATGTACTTGCCTTCTGAAAATTTCCGTTTC 10629 32 100.0 35 ................................ ATGTGTGTTCCGCTGCGGTACTGTTCCGGTCTGCG 10696 32 100.0 34 ................................ TGGATGGTTTTTAAAATATAGCGCACTCCATCGT 10762 32 100.0 35 ................................ GTACCCATACTGCTTGATGGTTGACCTGGTTTTTC 10829 32 100.0 33 ................................ ATAGAAACCCCAATATTTTTACTAGTGAAAGGG 10894 32 100.0 32 ................................ CTATCAATCCCATAACTGAAAGAACAACTCTT 10958 32 100.0 35 ................................ ATCTTTGCATTAAGCGTTAAATTCACCAGCCCAGC 11025 32 100.0 34 ................................ ATAGTAGCACATGCTTTCGGAATGTTCTACTAGA 11091 32 100.0 34 ................................ AGTCCGGAAGCGTGAGGTGTGGGGGTCTTGTACG 11157 32 100.0 33 ................................ ATCTACTTCTCCTCCTTCACCCGCTTCACTGAC 11222 32 100.0 33 ................................ ACGTTAAAACGTGACCAGTATTTGCTGATTAAC 11287 32 100.0 34 ................................ TTCAATCATCTGCTGAATATAATCTGGGAGATTA 11353 32 100.0 35 ................................ GCAAATAACATCACAGATATTAATAGCACTGCCGG 11420 32 100.0 33 ................................ CAAATCCTGTTGGCGCATATGCCATATTGTTAT 11485 32 100.0 34 ................................ AGTCAAGCTACTTTTTAACACAGATGAAGGTTCA 11551 32 100.0 35 ................................ TAACGCAAGTCAGGCTATTTTAAAAACTACAGATT 11618 32 100.0 32 ................................ ATGGTCGTCTGTAGTGACCGTTATCTTCAATC 11682 32 100.0 33 ................................ ACTAATGGTACAAGATTGTAAAGTATTTAAGAT 11747 32 100.0 35 ................................ ATTTTCATAACCTAAAGTTCGACGGAAATTTCTGG 11814 32 100.0 34 ................................ CCTTCTGTACTAATTATAACACTTTGCTTGACAA 11880 32 100.0 33 ................................ GCAATGTCTGTAAGAACATATCGTTCCTTTTAA 11945 32 100.0 36 ................................ ACGAAGTCTTGGTAAATCCAGATTTCCGAAGCTGTC 12013 32 100.0 36 ................................ TCCGTTGTAAAGTTCTGTAAAGTTATAGAAGTTATC 12081 32 100.0 35 ................................ AAAGAATGAATCAAAAACGTTGCACCCCAAGAAAT 12148 32 100.0 33 ................................ GTTCATGATTTTTGATAACTTCTACAATTTTAC 12213 32 100.0 33 ................................ CATAATCTGGCCCGGATAGAAGATTGCTTCAAG 12278 32 100.0 35 ................................ TGTACTTCGCAAGCGAACCAGCCCAGTCCAGCTAC 12345 32 100.0 32 ................................ ACAGCTATACAACGAACAGATTTCAGCTTTAA 12409 32 100.0 34 ................................ ATAGAAACACCTATATTTTTACTAGTGAAAGGTG 12475 32 100.0 35 ................................ ACCCTTCACAACATCACACATTCTTAATATTTACC 12542 32 100.0 34 ................................ AAATTCGTCAATAATCATGTGCTGTGTATCACTG 12608 32 100.0 34 ................................ CAACTGCAAATGGCGTAACCAATGCCAACGTTTT 12674 32 100.0 33 ................................ CCCTGAGTTCCTTCTTGTTCCTAATGCTTATAA 12739 32 100.0 34 ................................ AAGTTAATAGTGTTGACGCAGTTGAATTGATTGG 12805 32 100.0 35 ................................ CTTTGTGATGTGACAAGGATACAGATAGAAATCAA 12872 32 100.0 34 ................................ ATATACACTGGTATGATATGCTGACAAACCTTGC 12938 32 100.0 33 ................................ GGGAACAAGATTATCTCCAATAACATCTGTTAC 13003 32 100.0 34 ................................ TAATTTTATCTTGAACGTTAAGTACCCGCCGACG 13069 32 100.0 36 ................................ CAGCATGCCTTTTTTAAACATTCTCCACGGGTTGTC 13137 32 100.0 34 ................................ TTTAATCCCAAAGCTGAAAGAACAACGCTTCCAG 13203 32 100.0 34 ................................ AAAAAATGAATCAAAAACGTTGCACCCTAAGAAC 13269 32 100.0 34 ................................ ATCTTTGCATTCAATGTTAAGTTCAAAAGTCCGG 13335 32 100.0 34 ................................ GCAAAACTTTTTCTAAATAACCTATATGGAAAGT 13401 32 100.0 35 ................................ TCAAATTATAATTTTGGTAATTCTGCATATTCAAT 13468 32 100.0 33 ................................ ATCAATTATTTTAGCAAATTCTGCCCTTATAGA 13533 32 100.0 35 ................................ CGATAGCGGGTGAAGCCTTTAGAAATTCAATAACC 13600 32 100.0 34 ................................ CCCTAAATAATCAATCCCTGTCAGGCTCCGCAGG 13666 32 100.0 36 ................................ CTCCTTTGCCTTCAACATTCCCCGGAGGCGTTCCCT 13734 32 100.0 34 ................................ CATTTCTTCATCTTCTGACAGTATTATCCTAATC 13800 32 100.0 34 ................................ CACTTTTATGTATCCTTTTGATGTTATCGACAAC 13866 32 100.0 34 ................................ CCATGTTCTCTGTTTCCAGTTATATTTCCAGTTT 13932 32 100.0 33 ................................ TTGACTATGGTAAGTATCTTTACAGCACTTGCA 13997 32 100.0 35 ................................ ATTAGTCGCCTGCTGCCATCTGGCCGCAAACGTCC 14064 32 100.0 34 ................................ TCACAATTCCACGAACCGCAGAAAGTAGTCTATC 14130 32 100.0 34 ................................ CTTACCTGGGTAACACTTGATAATCTTCCGACTC 14196 32 100.0 35 ................................ AGTTTTGCTGACGATATTGATATATCGGTTAATGC 14263 32 100.0 34 ................................ ACAAGGCTCCAATCTGGCAGGCCGTAGCCCAAAA 14329 32 100.0 34 ................................ AAGTTCAATTTCATGTCCATTTTTTAAAATTAGT 14395 32 100.0 34 ................................ GTCTTCCACTTCAACAAAATAACTGTTTCTGCGC 14461 32 100.0 35 ................................ ATGCTTGTCTTCCTTTATTTTTTTAAATGTGTAAT 14528 32 100.0 35 ................................ AGACATACCCATTTTGCAACAATAAGTATAAAACG 14595 32 100.0 34 ................................ ATTGTAAGAACTAAAGCAGTAGCTTCTTCCATAG 14661 32 100.0 34 ................................ TGGAAAGTCAACCCGTATTTTGTTCCAATAACCC 14727 32 100.0 33 ................................ CATTTAAAGAAGAACTTGTGAAGGATATGAATG 14792 32 100.0 35 ................................ TGGTGTCGGCCGTTCCTCCCTGCGGTATGTCAATT 14859 32 100.0 34 ................................ AATCCGGTACGGGAGAATGCACATTGTTTTTAAA 14925 32 100.0 34 ................................ CATCGGCGCTAAGTCGTTTGTGCGGTGCTTTCTG 14991 32 100.0 35 ................................ CGGACCCTCAACCGGGGTCTCTTCAATGCAACCAG 15058 32 100.0 33 ................................ CGCGCGGTTCCATGATGCTTCTTGACATTATTC 15123 32 100.0 37 ................................ TGCATCTGCTGCCTTGTATTCTTCTAACAGTCCATTC 15192 32 100.0 36 ................................ TATGATTTTTTTATCACGCAACTGCCGCACCCGGCG 15260 32 100.0 34 ................................ CGGGCATGGCACATTCCATTCCCCACGTGAACTG 15326 32 100.0 35 ................................ TGCCCCGTCTTCCTGGGCTTCCTGCTGCCGTTCCG 15393 32 100.0 33 ................................ TGCCACCGTGACTTCCTTTGCCCCTATAATCCG 15458 32 100.0 34 ................................ TTTAATGCAGCTTGCATCCGCCACGTGTGGTGCT 15524 32 100.0 34 ................................ AGCTCCGCAGGGAGATGAATGCACTTGCTTCCAC 15590 32 100.0 34 ................................ CTTTCATCTGGTACGCGATAAACATCTAGTCTTC 15656 32 100.0 34 ................................ AACGTAATCAGGGAAAATGCGACACAGAATTATC 15722 32 100.0 35 ................................ ACTACCTTCAGTCCCTAAGAAGGTAACACAAGCTT 15789 32 100.0 35 ................................ CATCAATCACACCCCCAGATGTTACGATGTATTGC 15856 32 100.0 33 ................................ CTTTTATTACCTGTTTTAACTATATTCATTATA 15921 32 100.0 35 ................................ GACCTTTGCACTAGTAATGGTTTAAGGTTTGTGTG 15988 32 100.0 34 ................................ GATATATGTCTCCCCCATTTCGCGGTCTAACCTT 16054 32 100.0 34 ................................ ATTTTAAATTATCCTTTCTTAATTATGCATATGT 16120 32 100.0 34 ................................ CTTTACGTCAAGTGCTGACAAAATCTTTGTCATT 16186 32 100.0 34 ................................ TGCTAATAATTACTTCTCCCGAATAGGAATCAAG 16252 32 100.0 33 ................................ TTTTTCGAGATGTTTGAGATGCTGCTCAGCTAT 16317 32 100.0 33 ................................ CTTCATCCACTTCACCGACGCCCATTTCTTCCA 16382 32 100.0 34 ................................ GTTTTCGTCACACAAGATTGCAATCGGTGTCTTC 16448 32 100.0 34 ................................ TACAGATGCCGGGTATTTTGTGAAGCCCATTTTC 16514 32 100.0 34 ................................ CTTTACATCAAGTGCAGACAAAATCTTTGTCATT 16580 32 100.0 34 ................................ TAATTCTAACTGTTTACTTGCCATATTAAATATC 16646 32 100.0 32 ................................ CTAGCTGTCGCGCTCCGCTCCGCTGGTTTGCG 16710 32 100.0 34 ................................ CCCCGTTCGAAGGTGGGTTAGGCGGTGGCACATA 16776 32 100.0 34 ................................ CCCTACACTTCGTTTGCCAAATCGTATCTACCCA 16842 32 100.0 33 ................................ TTCCACAGTTTCGCCAAAGTCAAGCATACCTTT 16907 32 100.0 34 ................................ CTTCAGGAGCAGCACATCACCGACACAGTATTTC 16973 32 100.0 33 ................................ CGGCCGCATGCCAGTCACAGCTATATTCTCTGT 17038 32 100.0 33 ................................ CAACGACCAAGGCAATAGCCGCTGCAATTGCAA 17103 32 100.0 34 ................................ CTGTATACATAGCATCAACAATCTTAGCAATCAG 17169 32 100.0 35 ................................ CGTGTACGCCTGTTTTTGCGTACCGATGGCATCCG 17236 32 100.0 33 ................................ GTACATGGCTAATCCTTCATCGGGAGCGTGAGA 17301 32 100.0 33 ................................ GATTATCCCCAATTACATCTGTTACAGTGTGGT 17366 32 100.0 34 ................................ CATCAATCACACCCCCAGATGTTACGATGTATTG 17432 32 100.0 34 ................................ GCAGTGGAGACAGAAATACCGCGAACGTTTCTTC 17498 32 100.0 34 ................................ ATATTCATTAGAAACACCCTTAATGGCTGTAGTT 17564 32 100.0 34 ................................ CGTTTTCCCAACGGTATAATTCAAACCAGCCATT 17630 32 100.0 33 ................................ CATCCCCCCAGGCAATCTTCGAAATCTTTGGTC 17695 32 100.0 33 ................................ CATCCCTTCCGCGGCGCCCGAAACCAGAACCGT 17760 32 100.0 35 ................................ AAAATCCAAATTGACGGGTGATGAAACTCCCTCAA 17827 32 100.0 33 ................................ TGGAAACTGCGGGCCGCTAGAATCCGCAACAAT 17892 32 100.0 33 ................................ CCATCTAATTTCTGTTATTGCGTTGTTTTTTGC 17957 32 100.0 34 ................................ TACCGGAACAATAAACGCTGTGTTTTGTACATCA 18023 32 100.0 33 ................................ GGTGAAATTTTCTTTCACAAATTATTTTGAATA 18088 32 100.0 34 ................................ TTCCTTTCTTTTTGAACTTCTCTTATGAATCCAA 18154 32 100.0 36 ................................ CGCTGTGTGAACAACATGACAGAGCATAAGTTCATC 18222 32 100.0 34 ................................ GGGAAGGCCGCGTCAGCGTCCCGCCCGGTTATCC 18288 32 100.0 35 ................................ TTTATATTTTTTTCTGGTTTAAAAGCCAGTAAAAT 18355 32 100.0 33 ................................ AATCTCGTATCCGCAGCCAAAATTGAGAGTGAT 18420 32 100.0 35 ................................ AGAGCCGGGCGAAGCTGTCTATTGCGAAAGTGAAG 18487 32 100.0 34 ................................ ACCGAACCGTATTACCTGGCCGTTGCTCCCACCG 18553 32 100.0 36 ................................ GCCATCGGCATACTCAGCCAGGGCGCGCCGAAGCTC 18621 32 100.0 33 ................................ CTTGCGGAAGCTGTGGGGGAGACAAAAAATAAG 18686 32 100.0 33 ................................ TATTTCCAAGGGTCACCCAAAGCGGAATCATAA 18751 32 100.0 34 ................................ TTCCTCCTGGTGTCCCCACCCTAACGGATGTACT 18817 32 100.0 33 ................................ CTGGCTAATCTTTGCATAACACTGTAAAGTTGT 18882 32 100.0 34 ................................ TTCTTTCTGGGCTTTTATTTGGATACTACCCAGC 18948 32 100.0 36 ................................ AGCCGAAAGATTCTGCATATTCCATTGGCTTTGCAG 19016 32 100.0 34 ................................ AGTCAATTCCAGTTCCAATTGCGCCTCGTCTTTA 19082 32 100.0 38 ................................ TATGATTATCAGCAACCGGCGGTGGAGGCGATGATGGC 19152 32 100.0 34 ................................ AGGAAGAGCTGAAGGTGAGTGAGTGGGCAGAGCG 19218 32 100.0 35 ................................ TGCTTTCGTTAATCCGTTCTCAATAAGCGGAAACT 19285 32 100.0 33 ................................ ATCGTATTATCTGCCATCCTATAACCACCCTTC 19350 32 100.0 34 ................................ TATCACCTTTCCAATTAATACAGATACCGCAAGT 19416 32 100.0 33 ................................ TAGTTCTCCGTATTCAGTCTGGCGTTCCATTAC 19481 32 100.0 33 ................................ ACCGTTAAACATAAGACCGTCGCCACTTTCTAG 19546 32 100.0 33 ................................ CGGTTCAAAGCTCCAGAGATTGACAAGACAGAA 19611 32 100.0 33 ................................ AATTTCAATATCTATCGTTTTGTTTTTATCTCC 19676 32 100.0 34 ................................ TTGATATTGATATGGGGGGCGTATTTGAAGTATT 19742 32 100.0 35 ................................ TTTAACATTTCATTGCGGACGGAAACGTCATCAAT 19809 32 100.0 34 ................................ AACCGCTTTTTTTGTAAGCAGAAGAGGGGCTTGC 19875 32 100.0 33 ................................ TAGTTCTCCGTATTCAGTCTGGCGTTCCATTAC 19940 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 144 32 100.0 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGGATCGAAACTAGTTCTCCGTATTCAGTCTGGCGTTCCATTACGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTGTTACAATCTTGTTTGTCTTCGCCATTTTTAAAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTGCGATGAATGCAGGCAGAAGGTCCGGGGCAAGGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCGCAATACTGCCTTTATCTAGGTAATACCCTTTCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCGGCGTCAGAATGGAACCCATGCGATATTCTTCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACACTCTGCTGCTGCACTGTTTCCAGAAGCAATGCCGGTCAGGCTCGTAAGAGCCTGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 20117-21139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAS010000063.1 [Clostridium] symbiosum strain D40t1_170626_G9 NODE_63_length_29028_cov_22.7067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 20117 32 100.0 34 ................................ TGTTACAATCTTGTTTGTCTTCGCCATTTTTAAA 20183 32 100.0 35 ................................ TGCGATGAATGCAGGCAGAAGGTCCGGGGCAAGGC 20250 32 100.0 34 ................................ CGCAATACTGCCTTTATCTAGGTAATACCCTTTC 20316 32 100.0 33 ................................ CGGCGTCAGAATGGAACCCATGCGATATTCTTC 20381 32 100.0 34 ................................ ACTCTGCTGCTGCACTGTTTCCAGAAGCAATGCC 20447 32 100.0 34 ................................ TGCTTTCATTGATATTTCCTGTAGTATCTGAGTT 20513 32 100.0 33 ................................ AATAACTTCATTTGACCAATCTCATAATTCATC 20578 32 100.0 34 ................................ TACATTTTCCATCAGAATCACGTCCGGAAGAATT 20644 32 100.0 34 ................................ GATGTATTGTTTGAATAGCTGGTGTGTTCCCGTG 20710 32 100.0 34 ................................ CGGAACAAGGTTGTCTCCAATAACATCGGTTACA 20776 32 100.0 34 ................................ TGCTTGAGATAATATTGGCATGCCTGATATAATC 20842 32 100.0 34 ................................ TGGCCCATACGGCAAGGCCATGCATCGATTATAC 20908 32 100.0 34 ................................ ACTCCGATGGTTCCTGCTTTGCTGGGTTTGAATT 20974 32 100.0 35 ................................ AAGGGCGGTCGAGGATTTGGAAAAGATTAGGCTAT 21041 32 100.0 35 ................................ GTTCCGTAAACTTTCATAAACACACAGCTTTTCTT 21108 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ =================================== ================== 16 32 99.2 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GCTCGTAAGAGCCTGTGGATCGAAACAATTTCAATATCTATCGTTTTGTTTTTATCTCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTTGATATTGATATGGGGGGCGTATTTGAAGTATTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTTTAACATTTCATTGCGGACGGAAACGTCATCAATGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAACCGCTTTTTTTGTAAGCAGAAGAGGGGCTTGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTAGTTCTCCGTATTCAGTCTGGCGTTCCATTACGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGGATCGAAACTAGTTCTCCGTATTCAGTCTGGCGTTCCATTAC # Right flank : TTTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCAGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAGAATCATGGAACGTGAAGTGTATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //