Array 1 184712-186144 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPW01000011.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-3-15 3_15_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184712 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 184774 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 184835 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 184896 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 184957 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 185018 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 185079 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 185140 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 185201 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 185262 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 185323 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 185384 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 185445 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 185506 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 185567 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 185629 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 185690 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 185751 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 185812 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 185873 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 185934 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 185995 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 186056 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 186117 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 202427-204324 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPW01000011.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-3-15 3_15_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 202427 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 202488 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 202549 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 202610 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 202672 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 202733 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 202794 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 202855 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 202916 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 202977 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 203038 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 203099 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 203160 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 203221 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 203282 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 203343 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 203404 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 203465 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 203526 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 203587 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 203645 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 203706 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 203767 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 203828 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 203889 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 203950 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 204011 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 204072 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 204173 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 204234 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 204295 29 93.1 0 A...........T................ | A [204321] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //