Array 1 93207-92613 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952943.1 Atopobium sp. oral taxon 810 str. F0209 Scaffold224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 93206 32 100.0 33 ................................ CAATCGCAGCCTCCAAATCATTGTGCGTAACAG 93141 32 100.0 34 ................................ CCAGTCACGACTAGGTACTCGACACCAGTTTTCG 93075 32 100.0 33 ................................ TCAGCAGCGCATCCATGGTCCTCATCCACATCA 93010 32 84.4 1 ...........................NNNNN N Deletion [92978] 92977 32 87.5 34 NNNN............................ AGGCTGACCTTAGAGCGCGTCTGGAGAATTTCTT 92911 32 100.0 34 ................................ AAAAGCCAAGCGATGCAATCCGCGCTACAAGGTG 92845 32 100.0 34 ................................ GAGTATCTATCTGAAAAGACGGCGGGTGTGCATG 92779 32 100.0 35 ................................ ATCTTTTCACCTCCCCTACTCATCCACTTTGTCCC 92712 32 100.0 35 ................................ ATTAATGCGGAAACTTCCACAGACAGGATGCCCTG 92645 32 71.9 0 ....T...T..T.....T..AC....G.C.T. | G [92621] ========== ====== ====== ====== ================================ =================================== ================== 10 32 94.4 30 GTCGCGCCCTTCACGGGCGCGTGGATTGAAAC # Left flank : TGACCTTGAGGATTATCCTGCGTTTCTCTGGAGGTAGAGATGTATGTTTTGGTGACATACGATGTGGCAAGTGGAGGCACTGGCGGACCGAAGCGGCTTCGACGTGTTGCGAAGATTTGCACGCAATACGGGCAAAGGGTGCAGTATTCTGTGTTCGAGTGCTTGGTTGATCCGGGACAGTATGAGAGTATGAAACACGAACTTTCTAACGTTATTGATGCGAAGTATGACAGCCTGCGGTTCTACAATCTCGGGAAAAACTGGAAAGGTCGCGTTGAACACATTGGTGTGAAGGACTCCTATGATCCAGAGGGGTTTTTATGCATTTAGGATAGCTTTTGGCTGCGCGAACTCCAAGCAGTGGCCTTGTACCTTGAGGTTCGCGCATTTTTTTTAATCTAGATGATTAAAAAAATCATTTTTAGATCGCTATACGTTGGAATTTTTTTGAAAGAAGAATATAGTAGTGATGTCAATTCATATTACTGTATAAATTGACA # Right flank : ACTTGGCGTCTTCGCCCCTTGGATGCCTAGAATGGGTCACGCCTACAGCGAAACGCCCGACGAAGATGCAGGCTGGGACAGGGAGGAAGTCTACAAAGACACCCAGCAGCAGCGAGCACTCGAAGCAGAGATACGCAAGAACAAGCGCATCGCAGCTAATGAGAGCGCTACCGACCTCGAGAAGGCAGAAGCCAAGGCAAAAATCTGGAACGCCCAGAAGAAGCTCCGTGAGCTTACGTCCTCCAAGCCGTGGCTTCGTCGTGATTCAAGCCGTGAGAAGGCGCTCGAGCTAGCGGTACAGCCAAAAGGAGTGAAACTTAAATCATCCTTGAAAGCATGGGAAGGGGCTGAATTTGGCGGTACCTTTGGCGGAAGGACAGTAAAAGCGCGACGTGACTATGCAAAGTGTGGAGGTGCGACCATAGATGAACGCACGGGTGCAAGGTTTGCGCTGTTCAACGATAGAAACCGTGCGGGAATAGTAAAGGGTTCTAATCTCA # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42196-42363 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952967.1 Atopobium sp. oral taxon 810 str. F0209 Scaffold72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42196 36 77.8 30 NNNNNNNN............................ TGGCATCTCCACAGAGAGGCCTGTGCTCTC 42262 36 100.0 30 .................................... CGCATGGAATAGCAGGTTGCAAACGCGCGG 42328 36 91.7 0 ..........................A..T.T.... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 89.8 30 GTTGGATTACCAGTCAAAACGGCACTGCTCCAAAAC # Left flank : ATTACCAGTCAAAACGGCACTGCTCCAAAACGGATCTACTAGACGAAATCGCCAAGCATCACTCATACGAGTGTGAGCAAGTCGTACAGCAGCACTGGATGGAAGGCATCACATGGGAAATGGTGACTCTGAAAATGGGTTACAAGACACGTGATAGGGCATATCGAAAAGCAGATGCAGCGTTTGGCTGGGCTGACCTACACTTTGATATTGTGTGGGTAAAATCAGACCAGCTAGCTCTTGTGAGATTGGAGCAGTAATGGACGAAAATCAAAATCAGACGGTGGCGGAAATCGCTGAGGAAATCAGATCTAAGCTACCCAATGAAAAAGAAATCTTCGACCGCGAAAAAGTAGGAGATGCGCTAGTAGAAATCGCTGACCTGCTGGAAAATCGCGGGCTAAATCTTGCTGAATGCGCTGAGGTTGGGCGTATGCTAATGCTTTGGGCAGGGTTTGAAATCGCTCTTAATGGCAACGAGTTACAAGCAAAATAAACNN # Right flank : CGGGCAGGGTTCAAAATCGCTGCTAATGGCAACGAGTTACAAGCAAAATAAACTCAGAGTAGCGACAATCAAAATCAGTCGATAGAAATAATCCCTCTCACTTGAAAATCAGGTGGGAGGGATTATTTATTTACAGCCAGATACTACGGAAAATCTAATCTTGATTATCAATATCATTACCAGAGTCTAATCCTATTTGCTCGCACTCACGGGCAAGTTCATCCACTTCTCTCATGAACTTAAAATGCTCTTCCCATGATTTACGGCTTATTTCAGCCCTTTCTTCCAAGTCCTTCTCTAATGCCTTACGAAATCGGTAGCCCGAAATCGCTTTGTAAATGAAATAAGGGCTAATCAAAATCAAGCCGAGAATAGCAAGAGTGCCATTCCAGGCGAGAAATTGTACGTACGTCATAGTGCACGTACGTCATAGGAAATCACCCCTTCGAAAATCAGTGTACCCAAATCAAAATCAAGCCATAGGTTGGATTACCAGTCAA # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATTACCAGTCAAAACGGCACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //