Array 1 275943-276263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESLS010000007.1 Staphylococcus sp. GDY8P45P GDY8P45P_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 275943 36 100.0 38 .................................... CTAATCAAAAACGTATATAAATATTTTTTCATTTCTCT 276017 36 100.0 37 .................................... GTGTACATGTTTGTTTCATCATTTTCTTCTGATATTG 276090 36 100.0 29 .................................... TCCATTGATTCGCCAACCATGCTAATTCA 276155 36 100.0 37 .................................... AGCAAGAAATTAATTACATCGTTTTTTACGCCCGTTG 276228 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 99.4 36 AATCGACAACCACCCCGTAAAAGAGGGGACGAGAAC # Left flank : TAAATGTTTATAGTTTACTTCTATTATTTCATGTTATTACTAGAAAATTAGACTATTTTTACAATATAGCTTAAATATTATAGTTGATGTTTGTATCAATTATATTTCCAGTTAAATAGTTGGAATGGTATTCAAAGTAAATTTACTAAAGCATTTAGAGGGTTGTATAATGATTGAGTAATAAAAATTTAGTAGGTTTTCAAAATGAAGCAGAGACAAGATAATATGATTGAGGTATGGACTCATAGAAATAGATGGATATATTTTAAGAAAGTATTAACTCAATTTGTATTATAATTTATAGACCTATTTCTAGTTGAAGTGGAATTAATGAATTTAAAAAAGCAAGAAAAAACAGAATGCATTATTATATTCAATTGCTTTAATAATAAAGATATATCTGTGATAAAAACATTGTATTTAAGAGGCTACTAAATGATCTTAAATATTAGTTTATAGTAGCCTCTTTCTTTGTAGAAAAGGTTAAGGAAAGTGATTAA # Right flank : CCTCATCTTGATGATCTCAATTGGCTTGGTTCAAAAGAAATCGATAACCTCCGTAGAATAGAGAATAAGTATTAAAAATATATTTGATTTGACAAAATATTCTGCAAAAAAAGGGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCATTTCTAAATAAGCAGAAACAAAAATAACGTTCATACAAATAATTTCTTTATGATTAAGTTAGAATTAGAAAATCAATGCGAAATACGAATAACAGCGAATGGAACGTATATTATTGAGAGATTGGATGCAGTGTATTGCAATTCGAGAGTTGCTACTTAAGAAATTAAAAAGAAGAAAACAAAAAATAGGAATTAAATTTGAAATAAGATATAAAACAAATATTTTTGTCATAATTAATTTAGTAAGTGCTTTATTATTTAGTAGGATAGGAACACATCAAACATAAGCGGTTGAAAGTAAAGTAACGCCTAATAATACTACAAATA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGACAACCACCCCGTAAAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 5221-5539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESLS010000016.1 Staphylococcus sp. GDY8P45P GDY8P45P_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 5221 36 100.0 35 .................................... CTATACTCTTTAACGATAGCCTTTCCATAAAAGCT 5292 36 100.0 36 .................................... TTTTAATTTATCGTCACTATTAAATTTACTCTTTAA 5364 36 100.0 34 .................................... AAATTAAGATTTGCTTGTGACTTTCGACTGATAA 5434 36 100.0 35 .................................... CTTCATGGATTGCAAATATCTAATCCAGCTAATCT 5505 35 91.7 0 ...............................-..GT | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 98.3 35 GATCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Left flank : CAACTAAGTGTGCGAGGCGTTCTGGGGTTGTTTTGTCCCATTCACCAGGCCAGTCTTGAATCTTAGTGTTTTCGGCCATTTCTTTTAAGGTGGAGTAAGGACTGCCATCAAGCGCAATCAGCCGTTCAGAAATGACATCGAGTTGGCTGTCAATTTCTTCCATGAACTCATCCATCAAGGGGTGCAACTTCAAAAAGTTGGGTCCACGCATGTACCAATGCGTCTGATGGATAATCATTGACATCTGGCTCAAATCGGCAACGAGTTGATTTAATACTGCTTTGGTTTTCGTATATTTCATTAGATTGGTCTCCTTTCGATATGGTTATTATAACTTAGTGGTAGCTTAATCTGAAACGTTATACACTGGCAAATTAAGTTATTTATAGCCCGTAGAATTAAGTCGTTTTGAAAAGATGGAGACGTTATATGGAAGATTGTAAAATTAATCTACAATTGAATTTTATTTACCTTATGAAGATGTTCAAAACGCGTTAAAG # Right flank : TGTATTTTTTTATAAGCACTCTAAAAAATTTAAAAAAACTACATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTGGAAAATCATTACTTTGTCACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTACTTCTCCCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAGAACCATTCTCCACTAACTCAACTTATTTCCTCTTATGGAATGACACATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTAACAGGAAGAACTAGAGAGAGAATATGGAAGAAGATTGTTATAAATAAAATTATTAATCAAGCACGATGTCTTGAAAATAATTTACATACAGGAAATGTTAAATTATTGTTAGAATTTTCAAAAGAAGTTAGTACAGGAGAT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 16435-16760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESLS010000016.1 Staphylococcus sp. GDY8P45P GDY8P45P_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 16435 37 100.0 34 ..................................... GAATATTACTCCTAAAATACCTGCTACGATTAAG 16506 37 100.0 36 ..................................... CTGTTGTATAAACGTTAGTGTTTAAATAGTCCTCCA 16579 37 100.0 34 ..................................... CAGCTAAAATTTTTCTTTCGTTTTCGTTTAAAAT 16650 37 100.0 37 ..................................... ATTTTCAACTTTTGCTATATGATATAATTCTTTTGCT 16724 37 97.3 0 A.................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 36 TAATCTATAACCACCCCGTAAAAGAGGGGACGAGAAC # Left flank : TAACTGGGCAAACAGCAGGTGATATATTAAAAGATGTTGGAGTAAAGTTTGCACAAAATGTTGGAAAAGCCCAAATTAAAAGAATACCAGGAAGTGTACTAGTTAAAATTAATCAAAAAATAGGATTTAGATTAGTAACTAAATTTGGTGAAAAAGGATTAATTAATCTAGGAAAAATGGTTCCAGTTTTAGGCGGTGCAGTGGGAGCTTCATTTGACGTAGTTACAACTAGAGCAATTGCAGAGATAGCTAAAAAAACTTTTGAGCCATTTGATCAAGATAATGATAGAGTAAGAATAATTATTAACTAGAAAGTTAAATTAATGACTGTTTTTTAATAGTGTAAGTAAAAAATAGTCTATATATTTAGTTGTTGAAAAGAGGAATTAGTTTGTCAAAAAATATGACAAGAAGCACTTATAGTATGATGGGTTTGTCACTATTTTTGACAGCAATTTTCACCTTTGAACTACTGGTGTTATAGGCTTTAAACAGCTATC # Right flank : CCTCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAAATCAATAACCTCCCGTAGAATTGAGAGCAAGTATTAAAAATATATTTGGTTTGATAAAATAATCTGCAAAAAAAGAGGAACAAAAAAATCAAGATTTAAACTGTAATTCATTGTTTTTGCAATTAATCAACATTCAATTTTTAAATAAGCAGAAACAAAAATAACTTTCATACAAATAATTTCTTTGAGATTAAGTTGGAATTAGAAAACTAATACTAAATACAAATAACAGTGAATGGAATGTATATTATTGAGGAATTTGATGCAGTGTAGTGCAATTTCGAGAGCTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAATCAAGATATAAAAATAAATATTTTTACCATAACTACATTAGTAAATACTTTATTATTTAGTATACGAATGAAAGCGAAGTAACAGCTAGCAATGCTCCAGATATAGGCATCAGTATTATGAAAGAACAAGATTA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAATCTATAACCACCCCGTAAAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //