Array 1 10494-11925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQG010000011.1 Nocardia farcinica strain BJ06-0135 NODE_11_length_198143_cov_18.585140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10494 29 93.1 32 .......G..............C...... AAGAAATATCGAGTCGCCCTGTACTCGACCAT 10555 29 100.0 32 ............................. CGGTTGCGCGCCATGCAGAAGGGCGACGTGGT 10616 29 96.6 32 ............................A CCACCTGCGCCTGCTTGACCTCGACGCCGTGG 10677 29 100.0 32 ............................. CCCGGACCCGCCGAAGGCCATACCGATACCCG 10738 29 96.6 32 ......A...................... GGGACTTTACTGGTTTCGCTTTCGATCCCCGT 10799 29 100.0 32 ............................. GGTCGATCGGGGGTGGGTGGGGGTGCTGGTGA 10860 29 100.0 32 ............................. GGCAACGGCACCGGCGAGAACTTCACCGGCAT 10921 29 100.0 32 ............................. CGCCGCAGCCTCCATACGGCAAGCCGCCCCAG 10982 29 100.0 32 ............................. CCATCGGCAGGGTCGCAGCCCTCGCAGTCAGG 11043 29 100.0 32 ............................. CCCCACCGGTCGGACTCGAGCGCTTCGGGGTG 11104 29 100.0 32 ............................. CCGAGCGCCCGCAGGACAGCGAGGTAAAACGG 11165 29 100.0 32 ............................. GCACACCCCTCCACCTCGAGGTCCGGGTGCAG 11226 29 100.0 32 ............................. GAATCGGCACGGTCGGGGTGGTCGAAGGTCAG 11287 29 100.0 32 ............................. CAGATCGAGGTCGGGTCGATGGGCAGCGCCGC 11348 29 100.0 32 ............................. GACCGGATGGCCTTGAACGCCGCGTCCTCGCA 11409 29 96.6 32 ............................A CAGGGTCTAGGTACAGCTGGCGTACTGCCTCC 11470 29 100.0 32 ............................. TCGCTGGCCGCGTGGTGCCCGCGCTGGTGGGA 11531 29 96.6 32 ..............A.............. ACCTTCCAGCGCCTGGAGAAGGGAGAGCGCAC 11592 29 96.6 32 ........................A.... GAGCAGGTACTCGACGTGCTCGGGCTGCGGGT 11653 29 100.0 32 ............................. AGTGTGGTCGTGCAGCCTGCCGGACCAGCGGG 11714 29 100.0 32 ............................. CGCGTCGTGCTCGGCGGCTACAGCCAGGGCGC 11775 29 100.0 32 ............................. GGGTAGACGCCGTCGGCGTCGAGATCGATGTC 11836 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 11897 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.4 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : AAATCCCCCACACCGCTGAACCAGAAACCACCACCGCTCACGACATACGCATCATCGCCCGCAACCGAGTCGCCTTCGGCAAGAAGAAGCACAACCGACAGGCCGGGACCGTCACCCTCCACACAGCTACCTATGAAGGCAGACTCGAAGTAACCGACCCCGAACGCCTCACCACAGCCCTGCTCAACGGAATCGGACCAGCCAAAGCCTACGGCTGCGGACTACTCACCCTGGCGCCGCTGCAAAGACAATGACTTCCCGATACCGGAGGCACAGCCTCCACCAGTCCACACGAGCGACAAGCAAGATCATGAGCGTCAATCGTCGACCACCGCCACATCAAACGCGACGAGAACCCGATCACCGCGATCAACCCGATTCGCACAACCAGAACTGGTGGGATGCTGGCCGCCGGTCCCTCTACCGGCCTCCCGCGCCACCCGCAGAGCAAAGTGAATGAAAAACGCGCCCCTCGCGAATATAACAGCAGGTCAGGAAGT # Right flank : GTGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTCAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCCCCGACGAGGCATTGAGCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCGATCCGCTAGCCGCCGCCACTGGCCAGCGTGCTCAACTGCGCCCCTAATTGGCCAGTCCGGGGTTCGCATAGCCGACCTCGTACGCGCGATCGAGGAAAATGGCGACTTTGGAGGACAAGCACGCGATCAGCGCGATCGCCTCGCCTCAGTTGGACTGATGCGGGTGGGCCCGAACACTTCTCAGGCCGCACTTCGCCCGGTATGGGAGAGGCCGATCGCCTCTGCCAACGGCACGGTGGCCGCCATCGGGCACGACCTGGAGCGTATCGACAGCGACCTCCAGGTCATCAGGAGCGATACCCCAGCCTTGCGACGACAGCTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1414-173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQG010000013.1 Nocardia farcinica strain BJ06-0135 NODE_13_length_187205_cov_18.012268, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1413 28 100.0 33 ............................ CACCGCGGTCTTGGCCGACGCCATCTACAACGA 1352 28 100.0 33 ............................ CCCGACGTACGCGGGCCTGCGGACGTATCAGGG 1291 28 100.0 33 ............................ CGACCTCGGAGTCTCGACCTCGACGATCAAGCG 1230 28 100.0 33 ............................ CGGCAGCACCAACCCGTTGACCTCCGGCGGGAT 1169 28 100.0 33 ............................ CGATCGCCGCGACGACCCACCATGACGCCCGAC 1108 28 100.0 33 ............................ CAGCGATGTCGAGGCCTACGTGCGGATCTCGTC 1047 28 100.0 33 ............................ CGCCGCGCCCTGCCCGACTTCACCGACGTCGCG 986 28 100.0 33 ............................ CCCTTGGTTAACAAGGGGATTTGGTACGGGCCG 925 28 100.0 33 ............................ CGCGTTGATGATCTGGAACGGGCGCACGTTCGA 864 28 100.0 33 ............................ CTTCAAGAACATCGCCCTGTCCTACAAGGACGT 803 28 100.0 33 ............................ CCCTGCGAGCGACGACCGAGTCCCGCAGCAGCA 742 28 100.0 33 ............................ CTCGGCGTACCCGGAGTGCGACCGGTAGGGGGT 681 28 100.0 33 ............................ CCAACCCCAGGTGCCCGGCACGCGGGTCGACCA 620 28 100.0 33 ............................ CCCGAACTCGTGGACATGGACGGTCAGCTTCGA 559 28 100.0 33 ............................ CCGACATCGAATATGGTGATTTACTGCGACCCA 498 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 437 28 100.0 33 ............................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 376 28 100.0 33 ............................ GGTGGCCGCCCCTTACCCGGTCACCAAGCAACG 315 28 96.4 33 ...........A................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 254 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [201] 200 27 85.7 0 ........A.T....A....-....... | A [191] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGAAGAGCGCGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGGCTGTGTTTCCACGTTCCGAGAGTGCTATTACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGCGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACTTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGATTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4355-3656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQG010000013.1 Nocardia farcinica strain BJ06-0135 NODE_13_length_187205_cov_18.012268, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4354 28 100.0 33 ............................ CGCCGGGATTTGATCGACAGCGAGATCCTCGAC 4293 28 100.0 33 ............................ CTTGCGGATGCTGTGCGCGAAGTCGACGGGGTC 4232 28 100.0 33 ............................ CCCCGACGACCAGGCCGTGCGCTCACAGGTCAA 4171 28 100.0 33 ............................ CATGACGCACCAACTCGGTAGCGCGTGCACGGA 4110 28 100.0 33 ............................ CCTGAGCCGCACACTGAGCAAGGCCTCGATCCC 4049 28 100.0 33 ............................ CGACGGCACCGTGCTGGAATTCGGGGAGTACAC 3988 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 3927 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 3866 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 3805 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 3744 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 3683 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGACACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : TCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 172-2226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQG010000005.1 Nocardia farcinica strain BJ06-0135 NODE_5_length_404942_cov_18.569366, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 172 29 100.0 32 ............................. TCCGGCACGCTGACGAGGGTCGCGGCGACGAC 233 29 100.0 32 ............................. CGCCACCAGCGCGAGCCGCACCTGCGGCGGCA 294 29 100.0 32 ............................. GGCCCGATGTCGTCGACGCGCCACCGCAGCAA 355 29 100.0 32 ............................. TGTTCCGGCGCAATGGCGCTACGACTGGCTGC 416 29 100.0 32 ............................. GTGCAGGTGGCCTCGCAGCTGGTCACCAACGG 477 29 100.0 32 ............................. TTCGCCTCGATCCGCGCGAGCGCCTGCGCCGA 538 29 100.0 32 ............................. TCTTCGGCTTTCGCGCGGTCGAGGAATAGGCG 599 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 660 29 100.0 32 ............................. GCGGGCGACAAGATCGACCCCGTGGTCGCCCT 721 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 782 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 843 29 100.0 32 ............................. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 904 29 100.0 32 ............................. TGCTCGATTGCGGCGTACCGCAGATGGGCGGT 965 29 100.0 32 ............................. ATCGCCGCCTCGCTGCGCTACACGGTGAGCCG 1026 29 96.6 32 ............................G CTCCAGGCCCTCGATCCCCATCTCGCCGAGAA 1087 29 100.0 32 ............................. GTGACAAACGTCCGGGCTGAATCGGCAGACGG 1148 29 100.0 32 ............................. GACGCACTGGACCGTGTGAGATTCCAGCGAAT 1209 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGATACGTCCCG 1270 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 1331 29 100.0 32 ............................. AACGGCAGGGCCCGCTGGGGCGATCAGGAATA 1392 29 100.0 32 ............................. CAGCTCGGCAGCACCGCGAGGATCTGCTCTCG 1453 29 100.0 32 ............................. GGCTTGCCGCCGCCTTTCTCCAGCGTGGCGTC 1514 29 96.6 32 ............................G CCTTCGGCAGTCGTACGTATTGCTCGGCGCAT 1575 29 100.0 32 ............................. GTGCGCACGGCGGCCAGTTTCTTGCTCAGCGA 1636 29 100.0 32 ............................. CAGCCCTTCACGGTGTCGATCGCGCTGCCGAG 1697 29 100.0 32 ............................. TGCCCGTAGTAGTGCCGTGCCATGCCGCGAGG 1758 29 100.0 32 ............................. GGGTCGAACCACCGAAAATCCAAGCAGGGGTT 1819 29 100.0 32 ............................. TGTCATGTCGGGTCGTCTTCATCCTGGTGGCC 1880 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 1941 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 2002 28 96.6 32 ....................-........ CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 2062 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTCACAGCGGTACCA 2123 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTGAC 2199 28 72.4 0 A..T....G..A..T..-C........A. | ========== ====== ====== ====== ============================= =============================================== ================== 34 29 98.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTACCACCGGCGGCGCCGGCAGACCGGCCTCGGGCGTTTGACGCCCGTCGAATACGAAGTAATCATGACCCCACCGGCCAGTCAGGCCGCGTGACCGAACCTGTCACCGAATCCTGCATCAGTCCCGGGGATGAGCCCGCTTGCTTCCATTGTTCACTACCTCCAATGGTG # Right flank : CGGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCACTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11411-14594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQG010000005.1 Nocardia farcinica strain BJ06-0135 NODE_5_length_404942_cov_18.569366, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 11411 28 100.0 33 ............................ CTGCCGGTGCGCGAGCGCGTGAAGTCCCTCGGC 11472 28 100.0 33 ............................ CGCCGATCATTCTCGACGCCGGGCAGTGCTGGG 11533 28 100.0 33 ............................ CGCCCAGCTGCCTTCGGGCTTGTAGCCGCCGTT 11594 28 100.0 33 ............................ CCCCTGTGAGCCAGCTAACTTTTCGCGATTACC 11655 28 100.0 33 ............................ CTGCTCCTCGCTCATGCCGGCCGCGATCGCCTT 11716 28 100.0 33 ............................ CTTCAAGGACATCGCCCTGTCCTACAAGGACGT 11777 28 100.0 33 ............................ CATGTGCACTCGCGCCGCCCTGTAAGCGGCCAA 11838 28 100.0 34 ............................ CCGGTTCGGCACCTACCTACGTGAGTGCTCGGTG 11900 28 100.0 33 ............................ CGAGAGACGGCAGCGAGCGAGACGAGACATGTA 11961 28 100.0 33 ............................ CAATGTTTCCTTATCGTCTGATCCTCACCGGAA 12022 28 100.0 33 ............................ TTGGGCAAGGGCGACTACACGGTGTTCGTCGAC 12083 28 100.0 33 ............................ CGGCAGTTCCACCTCCGCCGCCGCGCATGCAGC 12144 28 100.0 33 ............................ CAGCACGATGCCAACGGGAAGTTCCTATATTTG 12205 28 100.0 33 ............................ CGGTCGAGTTAAGCCCCGTGTCTACAGTCCTCC 12266 28 100.0 33 ............................ CGAAGTGCAATGCGAGATTGGCAAAACGTGTCA 12327 28 100.0 33 ............................ CTGAACAATCTTCTGCGCCAACGAATCAAAGGA 12388 28 100.0 33 ............................ CAATTCCTGGTCCTTGTCGGCGGTCGCGGCCCT 12449 28 100.0 33 ............................ CTACGGCAGCATCCACCGGTACATCCTCGGGGC 12510 28 100.0 33 ............................ CATCTACCTGGCCACCGCGATCGGCGCGAACAC 12571 28 100.0 33 ............................ CGGCCAGAACAAGACCAAGGTCGGTGGCGCCGT 12632 28 100.0 33 ............................ CGGGGGCTCGATGACCTGGTTGCGGCAGGTGTG 12693 28 100.0 33 ............................ CACCGTGATCAACAGATCCCGCACCTCGGCATC 12754 28 100.0 33 ............................ CCGGCGCACCGCCTAGGCGTGTGTCGGCTGGAC 12815 28 100.0 33 ............................ ATCGCGGCGTTCGCCGACCAGATGCGGCCGGTG 12876 28 100.0 33 ............................ CCGGCCGACGGCCGGGGTGTCGAGCAGTGCGGG 12937 28 100.0 33 ............................ CCGTTGACCGATTACACGATCAAGCGCGACTAC 12998 28 100.0 33 ............................ CCCGGAGGAGCCGGACATGAACGACCAGTGGAC 13059 28 100.0 33 ............................ CGATGCAGCCCTGGAACGGGACCGTCCAACCGT 13120 28 100.0 33 ............................ CGTTGGAGGGGTGGAGTCGAATCCATCTGAGAT 13181 28 100.0 32 ............................ CCCCCGCCATAGACCATTGGTACTCGCTCCAC 13241 28 100.0 33 ............................ CGGTTTTCGAGGCGATTTCACGGAGACGGACAA 13302 28 100.0 33 ............................ CCGGGCACGGTCAGGGTGCTCGAAAGTAAGCGA 13363 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 13424 28 100.0 33 ............................ TGGCTCGCGTCGTCGTACGGCCAGGCCACCGCA 13485 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 13546 28 100.0 33 ............................ CTTCTCCACGCGGGAGAGAGCGGCGATGGTGTC 13607 28 100.0 33 ............................ GGCCCTGCTCGACCGCATCGAGCACCTGGCCGT 13668 28 100.0 33 ............................ CCGGAGGACATCATGGCCCAGTACAACGTCGAC 13729 28 100.0 33 ............................ TGTTTCCGGTACTTCCGCAGGACCGGGGGTATT 13790 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 13851 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 13913 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 13974 28 100.0 33 ............................ GTCGGGGTCGGCGGTGTTGTGGCCCCACAGCAG 14035 28 100.0 33 ............................ CCGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 14096 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 14158 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 14219 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 14279 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 14340 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 14566 28 71.4 0 ...G..TG.....CG.TC..A....... | G [14593] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 50 28 99.4 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 128316-129624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQG010000005.1 Nocardia farcinica strain BJ06-0135 NODE_5_length_404942_cov_18.569366, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 128316 28 100.0 33 ............................ CGCCTGGACGAGCGTTTCCATCACTACCTGCTG 128377 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 128438 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 128499 28 100.0 33 ............................ CTGCTCGATTGCGGCGTACCGCAGATGGGCGGT 128560 28 100.0 33 ............................ CAGCGAGCCGATCCTGACCAGGATGTCGCCAGT 128621 28 100.0 33 ............................ CTCTATGCGGACCGGCCAGTGGCGGAGTGGCAG 128682 28 100.0 33 ............................ CTCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 128743 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 128804 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 128865 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 128926 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 128987 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 129048 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 129109 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 129170 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 129231 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 129292 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 129353 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 129414 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 129475 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 129536 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 129597 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTTCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCGTTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 169060-170309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQG010000008.1 Nocardia farcinica strain BJ06-0135 NODE_8_length_282498_cov_17.749128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169060 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 169121 29 100.0 32 ............................. TCAGCCTTGATCTCTTCGCACTGCTCCCTTGC 169182 29 100.0 32 ............................. CGGAAGCGGGTCCGCCACCGCGGGATTCCCGG 169243 29 100.0 32 ............................. GATTGCACGATGCCGTCCCGCCCGATTCCCTC 169304 29 100.0 32 ............................. GCCGCATCGTCCAGGCCCGCGCCGAGGACCTT 169365 29 100.0 32 ............................. GCCTCGCCGAGATCGCCGAGCAGCTGCGCATC 169426 29 100.0 32 ............................. ATCACGCCCGTGCCCTCGGCGGCGGGCAGGAA 169487 29 100.0 32 ............................. TCTCCGGCGCGACGCACCACCGTGGCCACGTC 169548 29 100.0 32 ............................. TGGCCGCGCCAGCACTCGCGGTGGTGGCTGAT 169609 29 100.0 32 ............................. CGGCGACCGAAATCCTCGCTCCGTCCAGCGTT 169670 29 100.0 32 ............................. TTCCGCATTGATAGATTCCAGGAACGCGAACT 169731 29 100.0 33 ............................. CGCCTGCGCAAGCGCGCCGCCGATCTCGTCGGC 169793 29 100.0 32 ............................. ACCGACACCCCGCCGGGCCGAATCCGCACCAG 169854 29 100.0 32 ............................. GCCAGCGCCAGCAGTCCGCCCATCACGCCGCT 169915 29 100.0 32 ............................. CGGGAATCGAGCGGCCGTTGTGGAAGGATCGG 169976 29 100.0 32 ............................. TCACCATCGCCACGCTCACGATGCCGGTGCTG 170037 29 100.0 32 ............................. TCGTGGCTGGCTGCGTAGCGGGCGGTGTGGGT 170098 29 100.0 32 ............................. GCTTCGGCCTCGCAGCTCGCTGCCGCCGAGGA 170159 29 100.0 32 ............................. TGCTCGACCCCGGTGCGCGTGAGGCACCAGAC 170220 29 100.0 32 ............................. CAATGTCAGGTTTTCCAACATTGGACCGCCCA 170281 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 100.0 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGAGCTGCGGTGGTCGTGGGTCGTCGCCGGACCAGGCACGTAGGGCGGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCGGTCTTGCCCCTCAGGGAGGTACATCGGTGAAAAGTGAATGAAAAATGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCGATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCCTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCACGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //