Array 1 448075-447340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLAL010000002.1 Rhizobium daejeonense strain L61 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================= ================== 448074 29 100.0 32 ............................. GCGCATCTTCGCGTGCTTCACAGCGACGACGA 448013 29 100.0 32 ............................. GCGTGGAGTCGACAGATGCGGGCCATGGGGAT 447952 29 100.0 32 ............................. GCTGATTTCGTCTTCTACGACCGAATTGCGAA 447891 29 100.0 32 ............................. CGCCGGAGAAGCCGGAAGATCCGTTCGCAACC 447830 29 100.0 32 ............................. GGCTGGGAGCGCCGAGTGAAAGAGGTGCGATC 447769 29 100.0 32 ............................. TGCGCAGCGATGGCGGCCGCGCTCGCCCCAAC 447708 29 100.0 32 ............................. ATGGCAACGGCCTGCCATGGTCCGCCCTTAAA 447647 29 100.0 32 ............................. CGCACCTCGTAGACCTGACCGCTATACGGCTC 447586 29 100.0 189 ............................. CCGCAGCGGCCAAAGAACCAAGGGCTGCCCATGTGTTTCCCGCATGCACGGGAAGTGTCGTATGCAAAATGGAGGATGATACCGGCAGGAGCGCCAGGACAGACACCGCTCCTGTAAAACCTTGGGGTGACAAACTAGCCGAAGGACCGGCAACGGTGGAATATCCATTTAAGGAAGAGACGTCGAGGT 447368 29 72.4 0 A...........C.T.....A.G.CC..C | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================= ================== 10 29 97.2 50 GTGTTCCCCGCATACGCGGGGATGAACCG # Left flank : CCAAGGCGGGGCAGGGTTCGCTGCGCGCGCTTGCCGGCTGCTTCGGCTTTTCCGGCGACGATATCGAAAAGCGCTGCCGCGTGCTCTCGGGCGGCGAGAAGGCGCGGCTGGTGATGGCGATCATGCTGTTCGATCCGCCGAACCTGCTGGTTCTCGACGAGCCGACCAACCACCTCGATCTCGACACCAAGGAAATGCTGATCAAGGCGCTTGCCGACTACGAGGGCACCATGCTCTTCGTCAGCCACGACCGGCATTTTCTCGGCGCGCTGTCGAACCGCGTTCTGGAACTCTCCAACGAGGGCGTTCACCGCTATGACGGCGGTTATACCGAATATGTCGCCCGCACCGGCCACGAGGCACCGGGCGTCGGAGGCTGAGTTTTCCGGGCCGTGACCGGGTGTCGTCATGGCCTGAAAATACCGCTTTTCCGGGCTCAAAAAATCGGTAGACTTTGGCGCGAAGGAATTCGTGAATGATTTCACTGGCTTCCAGGAAGG # Right flank : TTTCAACCGGGGTAGACGCAAAGCCTGCCTTTCCTGTTATGTCTTGCGACGGGAGATAACAGGAGGACTGCATTCATGAGGGTCAGGGCCGCCATTTTAAGGCAATCGCCGGTCAAGCCGCCGTTTTCGGTGTCGCGGCCGCTTTCCATCGAGACGGTGGAGCTTGCGGGACCGGGGCCGGAGGAACTGCTGGTGCGGATCGGGGCGGCAGGGCTCTGCCACTCCGATCTTTCGGTCATCAACGGCGACCGGCCGCGGCCGACGCCGATGGTGCTCGGGCATGAGGCGGCGGGAACGGTGGAGGCGGTCGGAAGTGGGGTGCACGACATCCGGCCGGGCGACCGGGTGGTGACGACCTTCCTGCCATCCTGCGGGCATTGTCTGCCTTGCGCGGAAGGGCGTTCGGCGCTCTGCATTCCCGGCGCCGAGGCGAATGGCAAGGGGGAATTGCTCGGCGGCGGCTCGCGGCTTTCCTGCGAGGAGGTGCCGCTTTACCATCA # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.75, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 455120-454908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLAL010000002.1 Rhizobium daejeonense strain L61 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 455119 29 100.0 32 ............................. TCGGCAATCGCTGCCTCGTTCTCCGTCTCCAA 455058 29 100.0 32 ............................. CGACGTTCGCCGAGTTCATCGAGGATCACATC 454997 29 100.0 32 ............................. CTTTTCGCAGACCGTTCTGGAGCCGAGCGTGG 454936 29 86.2 0 ......................G..G.GT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTGTTCCCCACACGCGTGGGGATGAACCG # Left flank : GGCCGGAGGCGCCGGAGGATGCCGTTGGCCCCGCCTTCGAGGACCCTGCTCCCTCCGGAGACGAGGGGCAGCGCGGATGATGGTCGTCGTCACCAACAATGCTCCACCGCGCCTGCGCGGCCGGCTCGCCGTCTGGCTGCTGGAGGTCAGGGCCGGCGTCTATATCGGGGTCTATTCTGCCCGGACAAGGGAAATGATCCGCGGGCAGGTGGAGAGCCTGATCGAAGACGGCGACGTCGTGATCGCCTGGGCGGCTCCGACCGATGCCGGGTTCGACTTCGAGACCTTCGGCCGCAACCGCCGCGAACCGGTCGATTTCGACGGCCTGAAACTCGTCGCCTTCAAGCCTCTGGAAAATTGATCGAGCGACGTTTCATTCATTGTCCGGCGCATTTTTCAGTCGTTCCGAAGGCCGGAAAAATCAGCTGGTTTTCGTTGAAAAAATCGGTAGGATTTGCGGAGGTGGAATTTTCCTTATATTTCATCGGCTTCTGGGAAGA # Right flank : TTGTCTTCCCGTCCCTCTTGGCCTATTCTGACGGTGGTGACGCGCGGAGCAGGAAGCACGCCCTTCAAGGCGATCGGGATCAGGCGATTCCGGCCCCCCCGGTGCGTTACAACCCATTCAGCAACCTTGCGGTTCTTCCCAGCTTGTTATCGTGCCGATAGCGGCTCTTGCTGCCAGTTTCCCATTCAAAGCTCGTGAATACGCACTCCGGGCACGACGTCGCGGGCGATGTCGCAGAGATGGCGGTGGTGGGTGAGGTAGATCACCTGACCAAGCCCGGCCATCTGGCCGAACAGTCGGAAGACTTCCTCGGAGCGGGGCTCGTCGAAGGTTTCCATGATATCGTCGGCGACGAAGGGGATGGTTGCGGTGGGGCGGACGGCTGCGAATTCCTCGTAACCGGCGAAACGTAGCGCCAGATAGAGCTGGTAGCGGGTGCCGGTCGACATGGCGTCGGAGAGTTTCGAAGCACCATCCTTGGCCACGCCGATCAGGATTTC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 463693-463297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLAL010000002.1 Rhizobium daejeonense strain L61 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 463692 29 100.0 32 ............................. AGGCTGAGGCTGTCTTTGATACCTATCTGGCC 463631 29 100.0 32 ............................. TGCGGGAGTATGTGGCTACCTCAGATGCCCGC 463570 29 100.0 32 ............................. GCGTTTATCGCAAAGGGTCCGAGACTGACGAA 463509 29 100.0 32 ............................. TGGCACGTCGGCGGTTTCGAAGTCGTGCGTGT 463448 29 100.0 32 ............................. ATTGATGCCCTCCCCGCGAACATGACGACGAA 463387 29 100.0 33 ............................. AAATTGCTGCGGCGAACCGGTTCAACGAGCTGC 463325 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : ACCGTTCGTCTCGCTCGGCGCTCCGGCGGCTTGCTGGTGCCGGCGGTCAGGCGTGATGGAGCGGGTGTGGGGCTCGACTGGGCGCTGAGCGAGCTTTCCGTCCGGAAGCGCTGGCTGCTTGCCGGGGCCGCGATACTCGATGGTGGCGGCCTGCCGGCTCCGCGCGATCCGGCGGCACGAGACGCGGCGCGCGGCCTCTGGCCTGAATGGGAACGGACGATCGCTCTTTATGAAGTCGATTCGGACGGATCTCTTGCGACCGCACAGGACATGGGCCTTTTCTACGATGGCGTCGGCGGTTTGCGAAGGCAGTCTGTGTCCGGGGCGTGAACTCGACGAGGGGGCGCCGTTCAGGGCTCATTTCAGCAGCCTTCGTAGGCCAAAACCTCCACTTTTTTCCGCCTGCCCATGCCCGTCTAAAGGGCCCGAAAAACGATCCCAAAATCGGTACTTGTCAAATCGTCTGGATTTCCTAATAATTTCAGCGGCTTTCAGGAAGA # Right flank : CAACAGCGCCGCCTTGCAGGGCGGCGCGTCTAGTGTTCCCCACACGTGCGGAGTGCCCGCGGCATGGGGATTGTGTCATTCCCGAAATTGTCTTATTTATACTTCAATAATAATAGGAATATCAAAACATGAACCAGAGCGAGGCCCTTGCCGTTTTTGCAGCTCTTTCCCAGGAGACGCGGCTGAGGATCGTGCGCACGCTCGTCGTTGCCGGACCCGTAGGGATGGCTGCAGGGGCGCTGGCGGAACAGGTTGAGGTTTCACCATCCAACATGTCCTTCCATCTGAAGGAACTGGAGCGGGCGGGTCTCGTTACGCAGCAACGCGATTCGCGCTCGATCATTTATCGCGCAAGTGGCGAGAGACTCGGCGATCTCCTTCGTTTCCTGATGGAGGATTGCTGCGGCGGCAGGGCAGAGATATGCGCCCCGGCGTTTGCCATGGCGCAATGCTGTGGGCCGGTAAAGGGCGGCGTGAAATGACCTTCGATCTTCCACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //