Array 1 7577-6111 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJO01000031.1 Staphylococcus hominis strain RE2.7 RE2.7_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 7576 34 100.0 37 .................................. TTATTTGGTAATTCCATATAATCAGTAATATCAATAT 7505 34 100.0 38 .................................. GCTTTTTGTGTGTGAATAAATCGCTTTTAATTCTGTAT 7433 34 100.0 38 .................................. CCGTCATGGTCTAGCATTTCAATATTAAAATGCTTGAT 7361 34 100.0 36 .................................. ATTTCTTGAATTTTTTCTTTTACTAACATTGTTAAT 7291 34 100.0 38 .................................. TGATATAGCGTTTAGCACCTTTACCAAATCGATACAAT 7219 34 100.0 37 .................................. TCTATGTGTTTTGTTCTCTATAACGTCTATAATGCAT 7148 34 97.1 38 ...............A.................. TTATAATCACCATAGAACGCCATGTTTAAAAGGTTTAT 7076 34 88.2 37 ........C......G.A..T............. TCTTCAGGAATAGGTACTGTAACGTTGATTGTTTGAT AT [7071] 7003 33 91.2 38 .........-.T...G.................. AAATTCCCTATTGTAATAGTTGGTATAAGCATATAAAT 6932 34 97.1 38 ...............G.................. ATATAAATAGTTTTCAAGTTCTATAAGTTCGTAAATAT 6860 34 94.1 39 ...............G....T............. GTATGCTCTTTTGTTGCTTTATTTATAAGACCTTTCAAT 6787 34 97.1 37 ...............G.................. TTTAACATTAATTCTTCTTGTTTTCCTAAATTCATGA 6716 34 97.1 38 ...............A.................. TTGGTAAACCAGTAACATTAATACTTGATACTTTAAAT 6644 34 94.1 36 .................A..G............. TTAATTGATGTTTTCATTGCCATTGCGTCGAAGTAT 6574 34 88.2 39 ........C..T...G.A................ TGATAGTAAAATATAAATTATTTTTTTCATTATTCTGGA 6501 34 100.0 38 .................................. TCTTTATCCCACGCTCTAAATTTAGGTATCATCTCAAT 6429 34 97.1 35 .........C........................ GCATTTTTATTTTCAACGATGAGATAAATAATGAT 6360 34 97.1 38 ........C......................... GATACATGAGCTTACTAGATACCATTAATGGTGAAAAT 6288 34 94.1 39 .T.......C........................ AAACCGAGTATGCTTGCAAACGGAGGTTTCATTTAGGAT 6215 34 82.4 38 .........C.....G.A......A...A...C. TCATCTTAATGATCTCAATTAGCTTGGTTAAAAGGAAA 6143 33 73.5 0 .T.......T...-......T..A.AG....T.T | ========== ====== ====== ====== ================================== ======================================= ================== 21 34 94.7 38 TCGATAACTACCCCGTAGAACAGGGGACGAGAAC # Left flank : AGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGTACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGCCCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAATTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTCCAAGTGATTTGTCATTATTTTTGACAGCAAATTTTGGCTTTGAAATATTGATGTGATAGGATTTAAAGAGCTATCTAT # Right flank : TAAAAATATATTAGGTTTGATAAAATATTCTGTAAAAAAAAGAGAAACAAAAAAGGGCTTTTATACAAATAATTCTTTGGTATTAAGTTAGAATTAGAAAACTAATACTAAATATAAATAACAGCGAATGGAACGTATATTATTGAGGAATTGGATGCAGTGTAGTGTAATTTCGAGAGCTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAATCAAGATATAAAAACAAGTATTTTTTACCATAACTACATTAGTAAATACTTTATTATTTAGTATATGGATGAAAGCGAAGTGACAACTAGCAATGCTCCAGATATAGGCATTAGTATTATGAAAGAACAAGATTACCATCTAGAAAATGTAGCTTTTAAAAAAACTGAAGATAAAGTAGATCATTCTGTGAGTTTTTTATGTTAATAAGTCTGAACATGGGGATGTAGTATAAATACGGTTTAGTAGAAACTCGCGCCGAAGCTGTAGATGAGATTGACTA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGATAACTACCCCGTAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 17054-16300 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJO01000031.1 Staphylococcus hominis strain RE2.7 RE2.7_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 17053 36 100.0 34 .................................... GAAAGTTATTTCATCATGGTTAGATGTCTCAAGT 16983 36 100.0 36 .................................... GTTAAAATATCGCCATCAATTGAAATTGAATATTTT 16911 36 100.0 34 .................................... GTAAAAAATGAAAAAGGTATTAATAACGAACTTT 16841 36 100.0 37 .................................... CACGAAATTTCAAAATCGAATTATCATGAGAAATTCA 16768 36 100.0 35 .................................... AGAATGTAAATTGCTTCGTTTAAATCTTCCGTAGT 16697 36 100.0 35 .................................... TTTTTTCATCGTGACGCTCTTTTTTTAACCTTTCT 16626 36 97.2 37 ..........A......................... CTTAGATCATCATTCAAACTACGTGTCCCGTCCTCGT G [16602] 16552 36 97.2 37 ................A................... ATGAAAGTTGGTAACTTACCGTCTTTCCCTTCGAAAC 16479 36 94.4 36 ..........A...........C............. AGTGATAACAGGCTTTCGTATTTGTCCATTCCTAAA 16407 36 94.4 36 ...................A..C............. CACTTCTGCCATATCATTGATGAGTTCATCACGTTT 16335 35 86.1 0 ..........A...........C.......-...GT | G [16306] ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 97.2 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : ATATTTTTCTTCAAATGAATCAGATACATATTTTAAAAATATTAGACCTAACGCTACATTTTTATATTCAGCAGCATCCATACTTCCTCTCAATTTATCGGCAGCCTGCCATAACTTTTCTTCAAAACCTATTGTTGTCATTAATAACACCTCTTTAGATTACTATTAGTTTAAATATATCAAAAAATAAATACTTATTGTGTATGGCTTTTTTTATTATTTTAATATAGAAGTATATTTTTACTTTCCTGAACAGTGGTCACTAATTTTATCTCTTATTTTAAATTAAAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGAGTAATTATTAACATATTAAATGTAGTATACTCTTAATATAAGGAGAATGATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATTTATAAAAGTATCG # Right flank : GTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCCGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAATAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGCTGTTAGTTCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //