Array 1 1787-3037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLXP010000112.1 Lactobacillus helveticus strain NK1 NODE_112_length_3744_cov_115.553497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1787 28 100.0 34 ............................ CGTGATATTTGGGGAACGTTCTAACGGTAAAACG 1849 28 100.0 33 ............................ TTATTTAGCTAGTTTATTTTTTCATTTATTTTT 1910 28 100.0 33 ............................ TATAAAAATGTAAGAAGAAAAAATAAGGATTAA 1971 28 100.0 33 ............................ CAAGCGACAGCGTCTTCCCACCCGTACGTTAAA 2032 28 100.0 34 ............................ TATGGAAATAATGCTTTGGATAGTTAACCATCTT 2094 28 100.0 33 ............................ CTGGTGGTGCTACTGCTCCAGGTGGCACTTTAG 2155 28 100.0 33 ............................ CATGTACTTCTTTTTACCGCTTTTAAGAGTATA 2216 28 100.0 33 ............................ TTTCATCTGCTGTATCAGTTTGCGTAGCAACTT 2277 28 100.0 33 ............................ CTGAATACAGGGCTAGCCACGCAACGGCAGTTG 2338 28 100.0 33 ............................ TAAAAAGAATGCTACTTACAACGTGATATTTGG 2399 28 100.0 33 ............................ CTCAGTCTCGCCAAAACAGCAGAATACAAAGCA 2460 28 100.0 34 ............................ TGTCATGTCTTCGATGGTCTTCGCTTCTTTTTTA 2522 28 100.0 33 ............................ TACCTGAAGGTGCTACACCAGTTTGTGCTTGCT 2583 28 100.0 33 ............................ TGACTGATGAACAAAAGACAGCTTTGAAGAATG 2644 28 100.0 33 ............................ TATTGCCGTCTGCATCAAACCAATGATTCTTGA 2705 28 100.0 33 ............................ CACTTTGCAGATTTTTTAGGAGTGACAGCAGGA 2766 28 100.0 33 ............................ CTTATTTTTGATTTCTTGGATATTGCATTTAGT 2827 28 100.0 33 ............................ TCCAAGACGCACAGCATATGGAAGGACAACCAC 2888 28 100.0 33 ............................ CAAGCTTTCTCGGCTTCTATAATGCGATTGAAA 2949 28 100.0 33 ............................ TGAAATTAAACACTTAGTGCCTGTCTTGCACAG 3010 28 85.7 0 .......................TC.GA | ========== ====== ====== ====== ============================ ================================== ================== 21 28 99.3 33 GTTTTCTCCACGTAAGTGGAGGTGATCC # Left flank : TGACGCAGCAGTAAATCATGAAAAATTGCCTGAAATTGAAGAAAACGATCAGTCAGTGTTAGGCATAGTTGTCTGCAGTAAAGGCTATCCAACGCATCCGGCTCCTAATGTGAAGATCGGCAAGTTGCCTCACGGCACTAATACTTATATCGATTATGCCAACGTGAAAGGTAATTTGGATAATCTGATAGGTGATGGCGGCCGCCTGTTCATGGTGATTTCGGAAGCCGACAATCTAGTCCAGGCGCAGGATAATGTGTATTCTTATTTGAGTAAGCTGATCTGCTAGATTGCTTCTACCGCCATGATATTGGTAATCGTGCTTTGAGAGATTAGATGTATGAAGAAAGTCCCGTTTGGGGCTTTTTTAGTTTGGTGAATATTTATGGGAGTGAAGAATAAGAAATACGCTGGTATAATTATTGTTGTATAAAATACAAACTGAATGAATTTCAGCTTTTTATTAATTAAAAATGGCTTAACGACGGGATTCTTTTAGT # Right flank : AGGATCAGTCGTCTAACAGGGAAGACAGGCTTATTTGATATTAATAAGCAAGATATGGGTCCAATTCCCATCATCCTCAATATTTGAATAAAGTAAAAGCTCTTAGTTGTGAAAACTAATGGCTTTTTTAATGGATTAGTAATATTTTAGATCATCCTAAATTTTCTTTTATATAATAGGCTTGTATTGGGAGTAAAGGAGAAAATAACAATGTTATTGGCATGGGTTTGTTTAACATTTGCTGGTGTAAGTATTTCTACCGCTCAACCAGTTCAAGCCATAAGCAAGTATTCTGAAAAATGGCATACTATAAAAACTACTGAAAAAGTTTATGCCTACAAACCATATGTACCTCGTGGTGGTGCTATGTATCAAATGAAATTCATTCATAAAACACCAATCAAGAAAGGCACGTATCTAAGATTGATTCGTCTAAGTACTTCTTATCCATGGGAAATTGTACGTGGTAAAACTTACTTGGCAATCTTAAGAAAAGATGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTAAGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3153-3002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLXP010000056.1 Lactobacillus helveticus strain NK1 NODE_56_length_11199_cov_117.869039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3152 29 100.0 32 ............................. AAGATAACTCAAGTTACAATGAGAGTAATTAA 3091 29 100.0 32 ............................. AATTCAATGAGTGAAACTTCAGTTTCGTTATA 3030 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 90.8 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAATAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTAGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCACATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCAATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2409-2136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLXP010000103.1 Lactobacillus helveticus strain NK1 NODE_103_length_4853_cov_150.928269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2408 29 96.6 32 ............................T TAAAGAACTTCGCACTGATTTTAGGTTGATAA 2347 29 100.0 33 ............................. TAGGATTATCTAGTCTAAATAACATGAAAAAAG 2285 29 100.0 32 ............................. CTAACACTTTATATTGTGCCTCGGGGTCGGTG 2224 29 96.6 31 ............................T TTGTGCAACAGGCGTAGAAATGTTTGAAAAT 2164 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.6 32 GTATTCCCCACGTATGTGGGGGTGATCCC # Left flank : AATTTTTTATTATCTCGAAGACTATTATTCATTAAAGCTAAGAAAATATCCGCATACAATAATTGATCAGTTTTAGCCTCACTTGATAAGCAGCTATCCTTAATCTGCTGTCTGATTTCTTCTAACTTACTTTTATCATTTTGAAAATATGCCTGCGCTAACAAACTATTTAAAACTGATTTTCTTCGTAATTCTCATCTAATCTACCGAAAAATTGTTTTACTGAAATTTGATTGTAAATCAATAAACTAATTAAATCTTTTGCTGTAATCTTGTGTTTTCCTTTTTCAACTTTGGAATAATAAGATGGAGAAAGTATTTCGCCAGCAAATTCCTTTTGTTTTTTATTTTGGCTAACCCTGCATTCTCTGAGTAATTCTCCTATTGTCACAGAAATCACCTCCGATATCAAAAAATAATTTAATGACTATTTTAGCGATACAAGGATTAAAATTAAAGCAATGAAATATAAAGGGCTCCAACTTGGAGCCTTTTTATGT # Right flank : ACCAAGCACAAAACCATTAGCATTCAGGAAAGCACGGCAATTCTTAGTAGGAATATAAACATTGCGGAGAACAGAGCTACTGCTGGGATGTAGGGGTTTCTTCTTTTTTTGAAGCAGACCAGAATATTGGCACCATTTTAGTAAAATGGGATGGAAAAACCTGGTTGGATAGTGTTGAACAATTGAATACAGCATATCTAACTGGCTGTCATTAACAAAATCAAAATTGCATATTAGCTGTAATAACTGCATATCATTTTCTGACAAAGACAAAGAGCCTTTAAATCGTTTAGGACTATAAACAAACATAAAATACCTCCTAAATTAGGATTGAAATATGTATAAGAGTAGCACTTCTAATTCAGAACTTGGATAAAACTCTGAAAGCTAGAATATGCAAGGCTCTAGACGATTTTAAATACCGGAAAATATGTCTCTACAGCACTTCGATTTTGAAATTTATTTTGGAACTTAAAAAAGGAGAAAAAATGGATAATTTA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //