Array 1 6898-5879 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUDQ01000220.1 Bacillus pseudomycoides strain AFS009709 AFS009709_120_B7_Contig137_140618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6897 32 100.0 34 ................................ ATGTGAGGTCTTTTGATATGGAAATGTATAATTG 6831 32 100.0 34 ................................ ATCAATGCCTAATGATTCAACGAATGCACCAATA 6765 32 100.0 34 ................................ TTTAAAAAGATGGCAACCCGTGGGCAAGCCTTTG 6699 32 100.0 33 ................................ TGGTAAGGGGCTTATGAGAAGCTTTGTAGATGG 6634 32 100.0 33 ................................ ACCTACAAAGCTGACCAAACAAGTATTATGTTT 6569 32 100.0 33 ................................ TAATTCATGGGTTAAAATTTTACCTTCAGTTAA 6504 32 100.0 33 ................................ ATGCATTTTGTAGATACACTAAGATTATACAAG 6439 32 100.0 34 ................................ ATAAATAGGAATTGTTGTATGCCGCCACCTTGTA 6373 32 100.0 34 ................................ CTAAATATCGCACTTGCTACATCATCAGGCACTT 6307 32 100.0 34 ................................ TTTTGATTTACAATTTAAAGCAATTCCGATTCCG 6241 32 100.0 33 ................................ TTTAGAAAAGCTTTCCCAAAAGATACACATTAA 6176 32 100.0 34 ................................ ACTGTTAAACACGAACGAAAAGCGAAAGGCAAAA 6110 32 100.0 35 ................................ TTTCTGAAGTAGCTGGAGAAGATGATCCAATTGAA 6043 32 100.0 35 ................................ CCACCTCTTGTTTGATGTTCTATAAATAAACCAGC 5976 32 100.0 34 ................................ ATGTGATCCTCATTGATAATGAATCCTACACGTT 5910 32 93.8 0 .......................A....C... | ========== ====== ====== ====== ================================ =================================== ================== 16 32 99.6 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTATTAGCGGTGCAGGACAAAAAAGACTGCGAAAAGTTTCAAAAGTATGTCAAAATCATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTAGATGCAACTCAATTTGCTACTTTAAAGATGGAACTAGTTAAAATTATTGATGAAAGTGAGGATAGTCTCAGATTTTATCAGTTAGGTAACAACTATAAAAGTAAGGTCGAACATATCGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAACGTATAGCATACATAAAATCTCTAGTACATTCGCACCTAAATTTTCATAATTTATGATTAAAATTTATGATTTTCTATACAAATTTCTTTATCAAATAAAAAACTTGCATACTTTTGAACAGAATTAACGTATTTGTGTATTATTTTGAACACAAATCGCA # Right flank : AAGGTAAAATGAATCATATTTCGACTTTCACTTTCCTCTTTTTATCCTTTACTTTTATGCAAAAGAGATATAAAAAGAAGCTTAACCCCTTATGTATCAATGGATAGAAGCTTCTTTTTTTTGCAAGAATATCCTTTGCAACAAGATGCAATTATATTTCAGCGTATTCGCATCTTGTAGCTATTAGTATGTATGCTATATTCCACAAAATAATTACAAAAAATCTCTTATTCTCCTTATCTATTTCTATTCTATGCACCTTAAAGAAGACGTATGCACCATTCGAGGTGAACGTGTATAAATTAAATTGAAAGTGTCCAAAATAAAAGTTAAATAGGGTAGAAGAAAGGAAGACACTTTCATGAAGGGAAATAAAAGAAATCGTACAAAATTGGGGAAATGGTTAGACCATAACGGCATAGAACAACTAGAATTAGAACAAGAAACTGGTGTTAGTCGTAATACAATTTCAAGGTTATGTAACAATAAATCACACACAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 847-169 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUDQ01000256.1 Bacillus pseudomycoides strain AFS009709 AFS009709_120_B7_Contig173_140618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 846 29 100.0 36 ............................. TCTTTACCAATTTCAATACCATATAAAGTTTGTTCT 781 29 100.0 36 ............................. ACAGCAGCGAGCATTAGAGCGTCAAATAAAAAAAGC 716 29 100.0 37 ............................. ATCAGTAATTGCAATCTTGTTCTTAAAAGGTTACAAG 650 29 100.0 36 ............................. GAATATTGAACAAACAGGATAGAATACGATTTAATA 585 29 100.0 36 ............................. TACTCGCTTTTTGAGTATGGACCAACAAATTACTCG 520 29 100.0 36 ............................. TTCATCAAGGAAATCAAAGTAGGTCGGGTTTTAGCT 455 29 100.0 36 ............................. GTCGCATTTTCGAATCAAGTTGAGATAAATGGAATT 390 29 100.0 35 ............................. TTGACCTCAAGAGCGACTGAAATGTTAGGCTGAAG 326 29 100.0 36 ............................. ACTGTATAGATATACTCTGTTGTTCCATCTCCGATG 261 29 100.0 35 ............................. GTCAAAGGGCTGTCCGAAGTGGTACAAGCCGTATA 197 29 93.1 0 .......................A.G... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 99.4 36 GTTTTATAAGAACTATATGGAATGTAAAT # Left flank : TTTATTGGAGAAGATGCTTACAAACCGTTAAAGGCATGGTGGTAATATGTTTGTAATTGTCTCATATGATGTGGAAGTAAAAAGGGTTAGTAAAGTTCATAAAGTATTGAAAAAATATTTACAGTGGACTCAAAATTCTGTATTTGAAGGAGAGATTACAGAAGGAAAGTTAAAAAAATGTATGCATGAAATTTCGGAGAAAATTAATCCAGCTTTTGATTCTGTCTATGTCTACAGAGTTGCTAATCCGAGGAATATTCGAAAAGATATCTATGGGTGTGAAAAAGATTTTGAAACGATGTTTTTATAAAGCTATTTTGCCGTAAAGCTCCTTTTGAACTTTATTTCGCTAAATGTTGATATATTTGATATGAAGAGAGTTTCTTAGAAGAATCTAAAGACACAACTATCACTTTACGGCAAAATGTTATAAAATAAATGTAAATAAAGTGACAAAAACCCTTGGTGTTTAAGGCTTTTTGTTCGATGAAAATATCAGG # Right flank : TGGCTGAGGCGAAAATACTTTGTGTGAAGATTTTTCTATAAGGGGTCACCTTACATGCCCATCAACTTAAGAAGGAAAATAAAATGAACTTTCGTTCATATGAACGAAAAAAACTTAAAATATTTTGTGTCCTTAAAAATGAGCATACCAAATAAACCTAGATAGGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAAGAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //